Experiment: R2A_PIPES pH 4.25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fieF and slp are separated by 65 nucleotides slp and rlmJ are separated by 39 nucleotides rlmJ and OKGIIK_04565 are separated by 132 nucleotides OKGIIK_04565 and OKGIIK_04570 are separated by 58 nucleotides
OKGIIK_04550: fieF - cation efflux family transporter, at 995,782 to 996,693
fieF
OKGIIK_04555: slp - Outer membrane lipoprotein Slp family, at 996,759 to 997,274
slp
OKGIIK_04560: rlmJ - 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ, at 997,314 to 998,228
rlmJ
OKGIIK_04565: OKGIIK_04565 - hypothetical protein, at 998,361 to 998,687
_04565
OKGIIK_04570: OKGIIK_04570 - hypothetical protein, at 998,746 to 999,144
_04570
Position (kb) 997
998
999 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 996.398 kb on + strand, within fieF at 996.398 kb on + strand, within fieF at 996.398 kb on + strand, within fieF at 996.398 kb on + strand, within fieF at 996.398 kb on + strand, within fieF at 996.398 kb on + strand, within fieF at 996.398 kb on + strand, within fieF at 996.398 kb on + strand, within fieF at 996.398 kb on + strand, within fieF at 996.398 kb on + strand, within fieF at 996.399 kb on - strand, within fieF at 996.399 kb on - strand, within fieF at 996.399 kb on - strand, within fieF at 996.399 kb on - strand, within fieF at 996.399 kb on - strand, within fieF at 996.399 kb on - strand, within fieF at 996.399 kb on - strand, within fieF at 996.399 kb on - strand, within fieF at 996.399 kb on - strand, within fieF at 996.399 kb on - strand, within fieF at 996.458 kb on + strand, within fieF at 996.458 kb on + strand, within fieF at 996.458 kb on + strand, within fieF at 996.458 kb on + strand, within fieF at 996.458 kb on + strand, within fieF at 996.458 kb on + strand, within fieF at 996.458 kb on + strand, within fieF at 996.458 kb on + strand, within fieF at 996.458 kb on + strand, within fieF at 996.458 kb on + strand, within fieF at 996.458 kb on + strand, within fieF at 996.458 kb on + strand, within fieF at 996.458 kb on + strand, within fieF at 996.458 kb on + strand, within fieF at 996.458 kb on + strand, within fieF at 996.458 kb on + strand, within fieF at 996.458 kb on + strand, within fieF at 996.458 kb on + strand, within fieF at 996.458 kb on + strand, within fieF at 996.459 kb on - strand, within fieF at 996.459 kb on - strand, within fieF at 996.459 kb on - strand, within fieF at 996.459 kb on - strand, within fieF at 996.459 kb on - strand, within fieF at 996.459 kb on - strand, within fieF at 996.459 kb on - strand, within fieF at 996.729 kb on + strand at 996.729 kb on + strand at 996.730 kb on - strand at 996.730 kb on - strand at 996.871 kb on + strand, within slp at 996.871 kb on + strand, within slp at 996.871 kb on + strand, within slp at 996.871 kb on + strand, within slp at 996.871 kb on + strand, within slp at 996.871 kb on + strand, within slp at 996.871 kb on + strand, within slp at 996.871 kb on + strand, within slp at 996.871 kb on + strand, within slp at 996.871 kb on + strand, within slp at 996.871 kb on + strand, within slp at 996.871 kb on + strand, within slp at 996.871 kb on + strand, within slp at 996.871 kb on + strand, within slp at 996.871 kb on + strand, within slp at 996.872 kb on - strand, within slp at 996.872 kb on - strand, within slp at 996.872 kb on - strand, within slp at 996.872 kb on - strand, within slp at 996.872 kb on - strand, within slp at 996.872 kb on - strand, within slp at 996.872 kb on - strand, within slp at 996.872 kb on - strand, within slp at 996.872 kb on - strand, within slp at 996.872 kb on - strand, within slp at 996.872 kb on - strand, within slp at 996.872 kb on - strand, within slp at 996.872 kb on - strand, within slp at 996.872 kb on - strand, within slp at 996.946 kb on + strand, within slp at 996.946 kb on + strand, within slp at 996.946 kb on + strand, within slp at 996.947 kb on - strand, within slp at 996.947 kb on - strand, within slp at 996.947 kb on - strand, within slp at 996.947 kb on - strand, within slp at 996.964 kb on + strand, within slp at 996.964 kb on + strand, within slp at 996.964 kb on + strand, within slp at 996.964 kb on + strand, within slp at 996.964 kb on + strand, within slp at 996.964 kb on + strand, within slp at 996.965 kb on - strand, within slp at 996.965 kb on - strand, within slp at 997.186 kb on + strand, within slp at 997.186 kb on + strand, within slp at 997.186 kb on + strand, within slp at 997.186 kb on + strand, within slp at 997.186 kb on + strand, within slp at 997.186 kb on + strand, within slp at 997.186 kb on + strand, within slp at 997.186 kb on + strand, within slp at 997.187 kb on - strand, within slp at 997.187 kb on - strand, within slp at 997.187 kb on - strand, within slp at 997.187 kb on - strand, within slp at 997.187 kb on - strand, within slp at 997.187 kb on - strand, within slp at 997.187 kb on - strand, within slp at 997.187 kb on - strand, within slp at 997.315 kb on + strand at 997.316 kb on - strand at 997.640 kb on - strand, within rlmJ at 997.651 kb on + strand, within rlmJ at 997.651 kb on + strand, within rlmJ at 997.652 kb on - strand, within rlmJ at 997.708 kb on + strand, within rlmJ at 997.708 kb on + strand, within rlmJ at 997.708 kb on + strand, within rlmJ at 997.708 kb on + strand, within rlmJ at 997.708 kb on + strand, within rlmJ at 997.708 kb on + strand, within rlmJ at 997.708 kb on + strand, within rlmJ at 997.708 kb on + strand, within rlmJ at 997.708 kb on + strand, within rlmJ at 997.709 kb on - strand, within rlmJ at 997.709 kb on - strand, within rlmJ at 997.709 kb on - strand, within rlmJ at 997.709 kb on - strand, within rlmJ at 997.709 kb on - strand, within rlmJ at 997.709 kb on - strand, within rlmJ at 997.709 kb on - strand, within rlmJ at 997.729 kb on + strand, within rlmJ at 997.729 kb on + strand, within rlmJ at 997.730 kb on - strand, within rlmJ at 997.795 kb on + strand, within rlmJ at 997.795 kb on + strand, within rlmJ at 997.795 kb on + strand, within rlmJ at 997.940 kb on - strand, within rlmJ at 998.089 kb on + strand, within rlmJ at 998.119 kb on + strand, within rlmJ at 998.119 kb on + strand, within rlmJ at 998.119 kb on + strand, within rlmJ at 998.119 kb on + strand, within rlmJ at 998.119 kb on + strand, within rlmJ at 998.119 kb on + strand, within rlmJ at 998.119 kb on + strand, within rlmJ at 998.119 kb on + strand, within rlmJ at 998.119 kb on + strand, within rlmJ at 998.120 kb on - strand, within rlmJ at 998.120 kb on - strand, within rlmJ at 998.120 kb on - strand, within rlmJ at 998.120 kb on - strand, within rlmJ at 998.120 kb on - strand, within rlmJ at 998.120 kb on - strand, within rlmJ at 998.120 kb on - strand, within rlmJ at 998.120 kb on - strand, within rlmJ at 998.120 kb on - strand, within rlmJ at 998.120 kb on - strand, within rlmJ at 998.209 kb on + strand at 998.210 kb on - strand at 998.210 kb on - strand at 998.221 kb on + strand at 998.237 kb on + strand at 998.237 kb on + strand at 998.237 kb on + strand at 998.237 kb on + strand at 998.237 kb on + strand at 998.237 kb on + strand at 998.237 kb on + strand at 998.237 kb on + strand at 998.237 kb on + strand at 998.237 kb on + strand at 998.238 kb on - strand at 998.238 kb on - strand at 998.238 kb on - strand at 998.238 kb on - strand at 998.238 kb on - strand at 998.238 kb on - strand at 998.238 kb on - strand at 998.238 kb on - strand at 998.239 kb on + strand at 998.239 kb on + strand at 998.239 kb on + strand at 998.239 kb on + strand at 998.239 kb on + strand at 998.239 kb on + strand at 998.239 kb on + strand at 998.239 kb on + strand at 998.239 kb on + strand at 998.240 kb on - strand at 998.240 kb on - strand at 998.240 kb on - strand at 998.240 kb on - strand at 998.240 kb on - strand at 998.240 kb on - strand at 998.240 kb on - strand at 998.297 kb on + strand at 998.297 kb on + strand at 998.297 kb on + strand at 998.297 kb on + strand at 998.297 kb on + strand at 998.297 kb on + strand at 998.297 kb on + strand at 998.297 kb on + strand at 998.298 kb on - strand at 998.298 kb on - strand at 998.298 kb on - strand at 998.298 kb on - strand at 998.298 kb on - strand at 998.558 kb on + strand, within OKGIIK_04565 at 998.685 kb on + strand at 998.685 kb on + strand at 998.685 kb on + strand at 998.685 kb on + strand at 998.685 kb on + strand at 998.685 kb on + strand at 998.686 kb on - strand at 998.686 kb on - strand at 998.686 kb on - strand at 998.686 kb on - strand at 998.686 kb on - strand at 998.686 kb on - strand at 998.686 kb on - strand at 998.686 kb on - strand at 998.686 kb on - strand at 998.686 kb on - strand at 998.686 kb on - strand at 998.686 kb on - strand at 998.686 kb on - strand at 998.734 kb on + strand at 998.734 kb on + strand at 998.734 kb on + strand at 998.734 kb on + strand at 998.734 kb on + strand at 998.734 kb on + strand at 998.734 kb on + strand at 998.734 kb on + strand at 998.734 kb on + strand at 998.735 kb on - strand at 998.735 kb on - strand at 998.735 kb on - strand at 998.735 kb on - strand at 998.735 kb on - strand at 998.735 kb on - strand at 998.735 kb on - strand at 998.735 kb on - strand at 999.073 kb on + strand, within OKGIIK_04570 at 999.073 kb on + strand, within OKGIIK_04570 at 999.074 kb on - strand, within OKGIIK_04570 at 999.074 kb on - strand, within OKGIIK_04570
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.25 remove 996,398 + fieF OKGIIK_04550 0.68 +1.3 996,398 + fieF OKGIIK_04550 0.68 +2.0 996,398 + fieF OKGIIK_04550 0.68 -2.1 996,398 + fieF OKGIIK_04550 0.68 -1.4 996,398 + fieF OKGIIK_04550 0.68 -1.7 996,398 + fieF OKGIIK_04550 0.68 +0.3 996,398 + fieF OKGIIK_04550 0.68 +0.7 996,398 + fieF OKGIIK_04550 0.68 +0.5 996,398 + fieF OKGIIK_04550 0.68 +1.0 996,398 + fieF OKGIIK_04550 0.68 -0.3 996,399 - fieF OKGIIK_04550 0.68 -0.2 996,399 - fieF OKGIIK_04550 0.68 +0.2 996,399 - fieF OKGIIK_04550 0.68 +0.3 996,399 - fieF OKGIIK_04550 0.68 -1.7 996,399 - fieF OKGIIK_04550 0.68 -2.1 996,399 - fieF OKGIIK_04550 0.68 -0.5 996,399 - fieF OKGIIK_04550 0.68 -2.1 996,399 - fieF OKGIIK_04550 0.68 -0.3 996,399 - fieF OKGIIK_04550 0.68 +1.9 996,399 - fieF OKGIIK_04550 0.68 -2.4 996,458 + fieF OKGIIK_04550 0.74 -0.1 996,458 + fieF OKGIIK_04550 0.74 -0.5 996,458 + fieF OKGIIK_04550 0.74 +0.2 996,458 + fieF OKGIIK_04550 0.74 -0.8 996,458 + fieF OKGIIK_04550 0.74 +0.5 996,458 + fieF OKGIIK_04550 0.74 -0.8 996,458 + fieF OKGIIK_04550 0.74 -0.2 996,458 + fieF OKGIIK_04550 0.74 +1.0 996,458 + fieF OKGIIK_04550 0.74 +0.6 996,458 + fieF OKGIIK_04550 0.74 -1.7 996,458 + fieF OKGIIK_04550 0.74 -0.3 996,458 + fieF OKGIIK_04550 0.74 -0.8 996,458 + fieF OKGIIK_04550 0.74 +0.5 996,458 + fieF OKGIIK_04550 0.74 +1.0 996,458 + fieF OKGIIK_04550 0.74 +0.6 996,458 + fieF OKGIIK_04550 0.74 +0.6 996,458 + fieF OKGIIK_04550 0.74 -0.0 996,458 + fieF OKGIIK_04550 0.74 -1.3 996,458 + fieF OKGIIK_04550 0.74 -0.3 996,459 - fieF OKGIIK_04550 0.74 -0.8 996,459 - fieF OKGIIK_04550 0.74 +0.0 996,459 - fieF OKGIIK_04550 0.74 +1.5 996,459 - fieF OKGIIK_04550 0.74 -2.0 996,459 - fieF OKGIIK_04550 0.74 -0.7 996,459 - fieF OKGIIK_04550 0.74 +0.5 996,459 - fieF OKGIIK_04550 0.74 +0.2 996,729 + +3.4 996,729 + +0.2 996,730 - +0.7 996,730 - +2.8 996,871 + slp OKGIIK_04555 0.22 +2.0 996,871 + slp OKGIIK_04555 0.22 -0.5 996,871 + slp OKGIIK_04555 0.22 -2.1 996,871 + slp OKGIIK_04555 0.22 -0.5 996,871 + slp OKGIIK_04555 0.22 -0.6 996,871 + slp OKGIIK_04555 0.22 -0.1 996,871 + slp OKGIIK_04555 0.22 +0.5 996,871 + slp OKGIIK_04555 0.22 -0.7 996,871 + slp OKGIIK_04555 0.22 +0.1 996,871 + slp OKGIIK_04555 0.22 +0.6 996,871 + slp OKGIIK_04555 0.22 +0.3 996,871 + slp OKGIIK_04555 0.22 -1.0 996,871 + slp OKGIIK_04555 0.22 -2.0 996,871 + slp OKGIIK_04555 0.22 -0.1 996,871 + slp OKGIIK_04555 0.22 +0.4 996,872 - slp OKGIIK_04555 0.22 -0.4 996,872 - slp OKGIIK_04555 0.22 +1.9 996,872 - slp OKGIIK_04555 0.22 -0.6 996,872 - slp OKGIIK_04555 0.22 -1.8 996,872 - slp OKGIIK_04555 0.22 +2.6 996,872 - slp OKGIIK_04555 0.22 +0.0 996,872 - slp OKGIIK_04555 0.22 -0.5 996,872 - slp OKGIIK_04555 0.22 -0.2 996,872 - slp OKGIIK_04555 0.22 -0.4 996,872 - slp OKGIIK_04555 0.22 +0.0 996,872 - slp OKGIIK_04555 0.22 -1.0 996,872 - slp OKGIIK_04555 0.22 -0.5 996,872 - slp OKGIIK_04555 0.22 -1.0 996,872 - slp OKGIIK_04555 0.22 -2.1 996,946 + slp OKGIIK_04555 0.36 +0.6 996,946 + slp OKGIIK_04555 0.36 +0.3 996,946 + slp OKGIIK_04555 0.36 -1.0 996,947 - slp OKGIIK_04555 0.36 -0.0 996,947 - slp OKGIIK_04555 0.36 +0.6 996,947 - slp OKGIIK_04555 0.36 -1.5 996,947 - slp OKGIIK_04555 0.36 -0.3 996,964 + slp OKGIIK_04555 0.40 +0.0 996,964 + slp OKGIIK_04555 0.40 +1.6 996,964 + slp OKGIIK_04555 0.40 -0.9 996,964 + slp OKGIIK_04555 0.40 -2.1 996,964 + slp OKGIIK_04555 0.40 +0.5 996,964 + slp OKGIIK_04555 0.40 +1.4 996,965 - slp OKGIIK_04555 0.40 +0.8 996,965 - slp OKGIIK_04555 0.40 +1.0 997,186 + slp OKGIIK_04555 0.83 -1.3 997,186 + slp OKGIIK_04555 0.83 -2.4 997,186 + slp OKGIIK_04555 0.83 +0.0 997,186 + slp OKGIIK_04555 0.83 -0.3 997,186 + slp OKGIIK_04555 0.83 -0.2 997,186 + slp OKGIIK_04555 0.83 -2.1 997,186 + slp OKGIIK_04555 0.83 +0.2 997,186 + slp OKGIIK_04555 0.83 +1.1 997,187 - slp OKGIIK_04555 0.83 +0.3 997,187 - slp OKGIIK_04555 0.83 -0.9 997,187 - slp OKGIIK_04555 0.83 +0.5 997,187 - slp OKGIIK_04555 0.83 -0.3 997,187 - slp OKGIIK_04555 0.83 -1.3 997,187 - slp OKGIIK_04555 0.83 -0.0 997,187 - slp OKGIIK_04555 0.83 +0.3 997,187 - slp OKGIIK_04555 0.83 -1.2 997,315 + +0.6 997,316 - -1.0 997,640 - rlmJ OKGIIK_04560 0.36 -1.5 997,651 + rlmJ OKGIIK_04560 0.37 -1.1 997,651 + rlmJ OKGIIK_04560 0.37 -2.0 997,652 - rlmJ OKGIIK_04560 0.37 +0.6 997,708 + rlmJ OKGIIK_04560 0.43 +0.3 997,708 + rlmJ OKGIIK_04560 0.43 +0.0 997,708 + rlmJ OKGIIK_04560 0.43 -0.2 997,708 + rlmJ OKGIIK_04560 0.43 -0.3 997,708 + rlmJ OKGIIK_04560 0.43 -1.4 997,708 + rlmJ OKGIIK_04560 0.43 +0.5 997,708 + rlmJ OKGIIK_04560 0.43 -1.8 997,708 + rlmJ OKGIIK_04560 0.43 -0.5 997,708 + rlmJ OKGIIK_04560 0.43 +0.8 997,709 - rlmJ OKGIIK_04560 0.43 -1.8 997,709 - rlmJ OKGIIK_04560 0.43 +0.2 997,709 - rlmJ OKGIIK_04560 0.43 -1.0 997,709 - rlmJ OKGIIK_04560 0.43 -1.8 997,709 - rlmJ OKGIIK_04560 0.43 -1.4 997,709 - rlmJ OKGIIK_04560 0.43 -1.3 997,709 - rlmJ OKGIIK_04560 0.43 -0.0 997,729 + rlmJ OKGIIK_04560 0.45 +1.0 997,729 + rlmJ OKGIIK_04560 0.45 +0.0 997,730 - rlmJ OKGIIK_04560 0.45 +1.0 997,795 + rlmJ OKGIIK_04560 0.53 -0.5 997,795 + rlmJ OKGIIK_04560 0.53 -0.5 997,795 + rlmJ OKGIIK_04560 0.53 +1.0 997,940 - rlmJ OKGIIK_04560 0.68 +0.9 998,089 + rlmJ OKGIIK_04560 0.85 -1.0 998,119 + rlmJ OKGIIK_04560 0.88 -0.2 998,119 + rlmJ OKGIIK_04560 0.88 -1.5 998,119 + rlmJ OKGIIK_04560 0.88 +0.4 998,119 + rlmJ OKGIIK_04560 0.88 -2.1 998,119 + rlmJ OKGIIK_04560 0.88 -0.4 998,119 + rlmJ OKGIIK_04560 0.88 +0.4 998,119 + rlmJ OKGIIK_04560 0.88 -0.3 998,119 + rlmJ OKGIIK_04560 0.88 +0.5 998,119 + rlmJ OKGIIK_04560 0.88 +0.0 998,120 - rlmJ OKGIIK_04560 0.88 -0.7 998,120 - rlmJ OKGIIK_04560 0.88 -1.0 998,120 - rlmJ OKGIIK_04560 0.88 -1.2 998,120 - rlmJ OKGIIK_04560 0.88 -0.5 998,120 - rlmJ OKGIIK_04560 0.88 +0.2 998,120 - rlmJ OKGIIK_04560 0.88 +1.5 998,120 - rlmJ OKGIIK_04560 0.88 -3.4 998,120 - rlmJ OKGIIK_04560 0.88 -1.2 998,120 - rlmJ OKGIIK_04560 0.88 -0.5 998,120 - rlmJ OKGIIK_04560 0.88 -1.3 998,209 + +2.6 998,210 - +1.0 998,210 - -0.9 998,221 + -2.8 998,237 + +0.6 998,237 + +0.3 998,237 + +1.0 998,237 + -1.3 998,237 + +0.5 998,237 + +1.0 998,237 + -0.6 998,237 + -1.2 998,237 + -2.0 998,237 + -2.4 998,238 - -0.6 998,238 - -1.3 998,238 - -1.0 998,238 - +0.5 998,238 - -3.3 998,238 - -0.1 998,238 - -1.8 998,238 - -1.3 998,239 + +0.6 998,239 + -0.5 998,239 + -0.2 998,239 + -0.8 998,239 + +0.0 998,239 + +1.0 998,239 + -0.6 998,239 + -0.5 998,239 + -2.4 998,240 - -0.5 998,240 - -1.5 998,240 - -1.0 998,240 - -1.5 998,240 - -0.4 998,240 - -2.1 998,240 - -0.2 998,297 + +1.4 998,297 + +0.8 998,297 + +0.0 998,297 + +1.0 998,297 + -0.8 998,297 + +0.0 998,297 + -0.2 998,297 + +0.6 998,298 - -1.0 998,298 - -2.8 998,298 - -2.5 998,298 - +0.0 998,298 - -0.8 998,558 + OKGIIK_04565 0.60 -1.1 998,685 + -0.5 998,685 + +0.8 998,685 + +1.0 998,685 + -1.4 998,685 + +0.3 998,685 + +0.3 998,686 - +0.3 998,686 - -0.7 998,686 - +1.8 998,686 - -2.0 998,686 - -1.5 998,686 - -0.9 998,686 - +0.5 998,686 - -0.5 998,686 - +1.0 998,686 - +0.4 998,686 - -0.7 998,686 - +0.0 998,686 - +0.7 998,734 + +1.0 998,734 + +0.8 998,734 + -0.0 998,734 + +0.8 998,734 + -1.0 998,734 + -0.5 998,734 + +0.0 998,734 + -1.1 998,734 + -1.3 998,735 - +0.6 998,735 - -0.2 998,735 - -2.8 998,735 - -0.4 998,735 - -1.2 998,735 - -1.1 998,735 - -0.6 998,735 - -2.7 999,073 + OKGIIK_04570 0.82 +0.0 999,073 + OKGIIK_04570 0.82 -0.6 999,074 - OKGIIK_04570 0.82 -0.2 999,074 - OKGIIK_04570 0.82 +2.4
Or see this region's nucleotide sequence