Experiment: R2A_PIPES pH 4.25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt azlC and OKGIIK_04335 overlap by 1 nucleotides OKGIIK_04335 and yhfA are separated by 9 nucleotides yhfA and caiA are separated by 23 nucleotides
OKGIIK_04330: azlC - putative branched-chain amino acid permease (azaleucine resistance), at 944,390 to 945,130
azlC
OKGIIK_04335: OKGIIK_04335 - branched-chain amino acid transporter AzlD, at 945,130 to 945,441
_04335
OKGIIK_04340: yhfA - peroxiredoxin, at 945,451 to 945,861
yhfA
OKGIIK_04345: caiA - acyl-CoA dehydrogenase, at 945,885 to 947,654
caiA
Position (kb) 945
946 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 944.453 kb on + strand at 944.453 kb on + strand at 944.454 kb on - strand at 944.636 kb on + strand, within azlC at 944.636 kb on + strand, within azlC at 944.636 kb on + strand, within azlC at 944.636 kb on + strand, within azlC at 944.636 kb on + strand, within azlC at 944.636 kb on + strand, within azlC at 944.636 kb on + strand, within azlC at 944.637 kb on - strand, within azlC at 944.637 kb on - strand, within azlC at 944.637 kb on - strand, within azlC at 944.637 kb on - strand, within azlC at 944.637 kb on - strand, within azlC at 945.092 kb on + strand at 945.172 kb on + strand, within OKGIIK_04335 at 945.172 kb on + strand, within OKGIIK_04335 at 945.172 kb on + strand, within OKGIIK_04335 at 945.172 kb on + strand, within OKGIIK_04335 at 945.173 kb on - strand, within OKGIIK_04335 at 945.173 kb on - strand, within OKGIIK_04335 at 945.173 kb on - strand, within OKGIIK_04335 at 945.193 kb on + strand, within OKGIIK_04335 at 945.194 kb on - strand, within OKGIIK_04335 at 945.266 kb on + strand, within OKGIIK_04335 at 945.266 kb on + strand, within OKGIIK_04335 at 945.266 kb on + strand, within OKGIIK_04335 at 945.267 kb on - strand, within OKGIIK_04335 at 945.267 kb on - strand, within OKGIIK_04335 at 945.267 kb on - strand, within OKGIIK_04335 at 945.267 kb on - strand, within OKGIIK_04335 at 945.674 kb on + strand, within yhfA at 945.674 kb on + strand, within yhfA at 945.674 kb on + strand, within yhfA at 945.674 kb on + strand, within yhfA at 945.674 kb on + strand, within yhfA at 945.674 kb on + strand, within yhfA at 945.674 kb on + strand, within yhfA at 945.674 kb on + strand, within yhfA at 945.674 kb on + strand, within yhfA at 945.674 kb on + strand, within yhfA at 945.675 kb on - strand, within yhfA at 945.675 kb on - strand, within yhfA at 945.675 kb on - strand, within yhfA at 945.675 kb on - strand, within yhfA at 945.675 kb on - strand, within yhfA at 945.675 kb on - strand, within yhfA at 945.675 kb on - strand, within yhfA at 945.675 kb on - strand, within yhfA at 945.675 kb on - strand, within yhfA at 945.675 kb on - strand, within yhfA at 945.675 kb on - strand, within yhfA at 945.675 kb on - strand, within yhfA at 945.675 kb on - strand, within yhfA at 945.675 kb on - strand, within yhfA at 945.675 kb on - strand, within yhfA at 945.675 kb on - strand, within yhfA at 945.675 kb on - strand, within yhfA at 945.675 kb on - strand, within yhfA at 945.818 kb on + strand, within yhfA at 945.853 kb on + strand at 945.853 kb on + strand at 945.853 kb on + strand at 945.853 kb on + strand at 945.853 kb on + strand at 945.853 kb on + strand at 945.853 kb on + strand at 945.854 kb on - strand at 945.854 kb on - strand at 945.854 kb on - strand at 945.854 kb on - strand at 945.854 kb on - strand at 945.854 kb on - strand at 945.854 kb on - strand at 945.854 kb on - strand at 945.854 kb on - strand at 945.854 kb on - strand at 945.904 kb on + strand at 945.904 kb on + strand at 945.904 kb on + strand at 945.904 kb on + strand at 945.904 kb on + strand at 945.904 kb on + strand at 945.904 kb on + strand at 945.904 kb on + strand at 945.904 kb on + strand at 945.904 kb on + strand at 945.904 kb on + strand at 945.904 kb on + strand at 945.904 kb on + strand at 945.904 kb on + strand at 945.904 kb on + strand at 945.904 kb on + strand at 945.904 kb on + strand at 945.905 kb on - strand at 945.905 kb on - strand at 945.905 kb on - strand at 945.905 kb on - strand at 945.905 kb on - strand at 945.905 kb on - strand at 945.905 kb on - strand at 945.905 kb on - strand at 945.905 kb on - strand at 945.905 kb on - strand at 945.905 kb on - strand at 945.905 kb on - strand at 945.905 kb on - strand at 945.905 kb on - strand at 945.905 kb on - strand at 945.905 kb on - strand at 945.905 kb on - strand at 945.905 kb on - strand at 945.905 kb on - strand at 945.905 kb on - strand at 945.905 kb on - strand at 945.905 kb on - strand at 946.168 kb on + strand, within caiA at 946.213 kb on + strand, within caiA at 946.213 kb on + strand, within caiA at 946.213 kb on + strand, within caiA at 946.213 kb on + strand, within caiA at 946.213 kb on + strand, within caiA at 946.213 kb on + strand, within caiA at 946.213 kb on + strand, within caiA at 946.213 kb on + strand, within caiA at 946.213 kb on + strand, within caiA at 946.213 kb on + strand, within caiA at 946.214 kb on - strand, within caiA at 946.214 kb on - strand, within caiA at 946.214 kb on - strand, within caiA at 946.214 kb on - strand, within caiA at 946.214 kb on - strand, within caiA at 946.214 kb on - strand, within caiA at 946.214 kb on - strand, within caiA at 946.214 kb on - strand, within caiA at 946.214 kb on - strand, within caiA at 946.214 kb on - strand, within caiA at 946.214 kb on - strand, within caiA at 946.222 kb on + strand, within caiA at 946.222 kb on + strand, within caiA at 946.222 kb on + strand, within caiA at 946.222 kb on + strand, within caiA at 946.222 kb on + strand, within caiA at 946.222 kb on + strand, within caiA at 946.223 kb on - strand, within caiA at 946.223 kb on - strand, within caiA at 946.223 kb on - strand, within caiA at 946.223 kb on - strand, within caiA at 946.223 kb on - strand, within caiA at 946.223 kb on - strand, within caiA at 946.223 kb on - strand, within caiA at 946.223 kb on - strand, within caiA at 946.282 kb on + strand, within caiA at 946.315 kb on + strand, within caiA at 946.315 kb on + strand, within caiA at 946.316 kb on - strand, within caiA at 946.316 kb on - strand, within caiA at 946.316 kb on - strand, within caiA at 946.316 kb on - strand, within caiA at 946.316 kb on - strand, within caiA at 946.316 kb on - strand, within caiA at 946.316 kb on - strand, within caiA at 946.316 kb on - strand, within caiA at 946.316 kb on - strand, within caiA at 946.426 kb on + strand, within caiA at 946.426 kb on + strand, within caiA at 946.426 kb on + strand, within caiA at 946.426 kb on + strand, within caiA at 946.426 kb on + strand, within caiA at 946.426 kb on + strand, within caiA at 946.426 kb on + strand, within caiA at 946.426 kb on + strand, within caiA at 946.426 kb on + strand, within caiA at 946.426 kb on + strand, within caiA at 946.426 kb on + strand, within caiA at 946.427 kb on - strand, within caiA at 946.427 kb on - strand, within caiA at 946.427 kb on - strand, within caiA at 946.427 kb on - strand, within caiA at 946.427 kb on - strand, within caiA at 946.427 kb on - strand, within caiA at 946.427 kb on - strand, within caiA at 946.427 kb on - strand, within caiA at 946.427 kb on - strand, within caiA at 946.427 kb on - strand, within caiA at 946.427 kb on - strand, within caiA at 946.427 kb on - strand, within caiA at 946.427 kb on - strand, within caiA at 946.475 kb on + strand, within caiA at 946.496 kb on - strand, within caiA at 946.496 kb on - strand, within caiA at 946.546 kb on + strand, within caiA at 946.546 kb on + strand, within caiA at 946.546 kb on + strand, within caiA at 946.547 kb on - strand, within caiA at 946.547 kb on - strand, within caiA at 946.547 kb on - strand, within caiA at 946.547 kb on - strand, within caiA at 946.547 kb on - strand, within caiA at 946.547 kb on - strand, within caiA at 946.547 kb on - strand, within caiA at 946.606 kb on + strand, within caiA at 946.606 kb on + strand, within caiA at 946.606 kb on + strand, within caiA at 946.666 kb on + strand, within caiA at 946.666 kb on + strand, within caiA at 946.666 kb on + strand, within caiA at 946.667 kb on - strand, within caiA at 946.667 kb on - strand, within caiA at 946.832 kb on + strand, within caiA at 946.833 kb on - strand, within caiA at 946.833 kb on - strand, within caiA at 946.833 kb on - strand, within caiA at 946.833 kb on - strand, within caiA at 946.833 kb on - strand, within caiA at 946.833 kb on - strand, within caiA
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.25 remove 944,453 + -0.5 944,453 + -0.7 944,454 - -0.1 944,636 + azlC OKGIIK_04330 0.33 -0.1 944,636 + azlC OKGIIK_04330 0.33 +1.6 944,636 + azlC OKGIIK_04330 0.33 +1.1 944,636 + azlC OKGIIK_04330 0.33 -0.5 944,636 + azlC OKGIIK_04330 0.33 -2.1 944,636 + azlC OKGIIK_04330 0.33 -0.3 944,636 + azlC OKGIIK_04330 0.33 -1.5 944,637 - azlC OKGIIK_04330 0.33 -1.3 944,637 - azlC OKGIIK_04330 0.33 -1.3 944,637 - azlC OKGIIK_04330 0.33 -1.3 944,637 - azlC OKGIIK_04330 0.33 +0.8 944,637 - azlC OKGIIK_04330 0.33 +0.3 945,092 + +0.3 945,172 + OKGIIK_04335 0.13 +0.1 945,172 + OKGIIK_04335 0.13 +0.3 945,172 + OKGIIK_04335 0.13 +0.1 945,172 + OKGIIK_04335 0.13 +0.5 945,173 - OKGIIK_04335 0.14 -1.3 945,173 - OKGIIK_04335 0.14 -1.5 945,173 - OKGIIK_04335 0.14 -0.9 945,193 + OKGIIK_04335 0.20 -0.5 945,194 - OKGIIK_04335 0.21 -2.4 945,266 + OKGIIK_04335 0.44 -2.0 945,266 + OKGIIK_04335 0.44 -0.9 945,266 + OKGIIK_04335 0.44 +0.5 945,267 - OKGIIK_04335 0.44 -1.1 945,267 - OKGIIK_04335 0.44 -1.3 945,267 - OKGIIK_04335 0.44 -1.1 945,267 - OKGIIK_04335 0.44 -2.5 945,674 + yhfA OKGIIK_04340 0.54 +1.5 945,674 + yhfA OKGIIK_04340 0.54 -0.3 945,674 + yhfA OKGIIK_04340 0.54 +0.5 945,674 + yhfA OKGIIK_04340 0.54 -0.5 945,674 + yhfA OKGIIK_04340 0.54 +0.2 945,674 + yhfA OKGIIK_04340 0.54 +1.1 945,674 + yhfA OKGIIK_04340 0.54 +0.8 945,674 + yhfA OKGIIK_04340 0.54 +2.1 945,674 + yhfA OKGIIK_04340 0.54 -0.4 945,674 + yhfA OKGIIK_04340 0.54 -0.3 945,675 - yhfA OKGIIK_04340 0.55 +0.6 945,675 - yhfA OKGIIK_04340 0.55 +1.1 945,675 - yhfA OKGIIK_04340 0.55 -0.5 945,675 - yhfA OKGIIK_04340 0.55 -1.5 945,675 - yhfA OKGIIK_04340 0.55 -1.3 945,675 - yhfA OKGIIK_04340 0.55 -1.9 945,675 - yhfA OKGIIK_04340 0.55 +0.6 945,675 - yhfA OKGIIK_04340 0.55 +0.1 945,675 - yhfA OKGIIK_04340 0.55 +0.3 945,675 - yhfA OKGIIK_04340 0.55 +0.1 945,675 - yhfA OKGIIK_04340 0.55 -0.1 945,675 - yhfA OKGIIK_04340 0.55 +1.1 945,675 - yhfA OKGIIK_04340 0.55 -0.9 945,675 - yhfA OKGIIK_04340 0.55 +1.1 945,675 - yhfA OKGIIK_04340 0.55 +2.9 945,675 - yhfA OKGIIK_04340 0.55 +0.5 945,675 - yhfA OKGIIK_04340 0.55 +0.6 945,675 - yhfA OKGIIK_04340 0.55 +0.2 945,818 + yhfA OKGIIK_04340 0.89 -1.6 945,853 + -0.5 945,853 + +0.8 945,853 + +0.1 945,853 + +0.9 945,853 + +1.2 945,853 + +0.5 945,853 + +0.8 945,854 - -0.9 945,854 - -0.4 945,854 - +1.5 945,854 - +0.0 945,854 - +0.2 945,854 - +0.5 945,854 - -2.5 945,854 - -2.1 945,854 - +0.5 945,854 - -0.1 945,904 + -1.4 945,904 + -2.3 945,904 + +0.3 945,904 + +1.5 945,904 + -0.5 945,904 + -0.5 945,904 + +0.1 945,904 + -0.1 945,904 + +0.6 945,904 + -1.1 945,904 + +0.1 945,904 + +0.5 945,904 + +0.6 945,904 + +0.8 945,904 + -0.1 945,904 + -1.5 945,904 + -1.5 945,905 - +0.4 945,905 - -1.1 945,905 - +0.5 945,905 - +0.2 945,905 - -1.8 945,905 - -1.4 945,905 - +3.4 945,905 - +2.3 945,905 - +2.9 945,905 - -0.3 945,905 - +1.3 945,905 - +0.2 945,905 - -0.1 945,905 - -0.1 945,905 - +1.1 945,905 - -0.8 945,905 - -0.3 945,905 - +1.6 945,905 - +0.1 945,905 - -0.3 945,905 - +2.5 945,905 - -0.1 946,168 + caiA OKGIIK_04345 0.16 +1.9 946,213 + caiA OKGIIK_04345 0.19 +0.2 946,213 + caiA OKGIIK_04345 0.19 -0.2 946,213 + caiA OKGIIK_04345 0.19 -0.2 946,213 + caiA OKGIIK_04345 0.19 -0.3 946,213 + caiA OKGIIK_04345 0.19 +0.1 946,213 + caiA OKGIIK_04345 0.19 +2.1 946,213 + caiA OKGIIK_04345 0.19 +1.1 946,213 + caiA OKGIIK_04345 0.19 -1.6 946,213 + caiA OKGIIK_04345 0.19 -0.8 946,213 + caiA OKGIIK_04345 0.19 -0.9 946,214 - caiA OKGIIK_04345 0.19 +1.8 946,214 - caiA OKGIIK_04345 0.19 -0.5 946,214 - caiA OKGIIK_04345 0.19 +1.1 946,214 - caiA OKGIIK_04345 0.19 +0.4 946,214 - caiA OKGIIK_04345 0.19 +0.2 946,214 - caiA OKGIIK_04345 0.19 +0.1 946,214 - caiA OKGIIK_04345 0.19 -0.1 946,214 - caiA OKGIIK_04345 0.19 +0.2 946,214 - caiA OKGIIK_04345 0.19 +1.1 946,214 - caiA OKGIIK_04345 0.19 +1.1 946,214 - caiA OKGIIK_04345 0.19 -0.5 946,222 + caiA OKGIIK_04345 0.19 -0.9 946,222 + caiA OKGIIK_04345 0.19 +1.6 946,222 + caiA OKGIIK_04345 0.19 +1.1 946,222 + caiA OKGIIK_04345 0.19 +0.1 946,222 + caiA OKGIIK_04345 0.19 -0.4 946,222 + caiA OKGIIK_04345 0.19 -1.2 946,223 - caiA OKGIIK_04345 0.19 -4.3 946,223 - caiA OKGIIK_04345 0.19 +0.1 946,223 - caiA OKGIIK_04345 0.19 -2.1 946,223 - caiA OKGIIK_04345 0.19 -0.5 946,223 - caiA OKGIIK_04345 0.19 -1.0 946,223 - caiA OKGIIK_04345 0.19 +1.6 946,223 - caiA OKGIIK_04345 0.19 -1.1 946,223 - caiA OKGIIK_04345 0.19 +0.2 946,282 + caiA OKGIIK_04345 0.22 +0.1 946,315 + caiA OKGIIK_04345 0.24 +0.8 946,315 + caiA OKGIIK_04345 0.24 -0.3 946,316 - caiA OKGIIK_04345 0.24 -0.3 946,316 - caiA OKGIIK_04345 0.24 -0.9 946,316 - caiA OKGIIK_04345 0.24 +1.1 946,316 - caiA OKGIIK_04345 0.24 -1.1 946,316 - caiA OKGIIK_04345 0.24 +0.3 946,316 - caiA OKGIIK_04345 0.24 +0.6 946,316 - caiA OKGIIK_04345 0.24 -1.3 946,316 - caiA OKGIIK_04345 0.24 +1.1 946,316 - caiA OKGIIK_04345 0.24 -0.4 946,426 + caiA OKGIIK_04345 0.31 +0.2 946,426 + caiA OKGIIK_04345 0.31 +0.3 946,426 + caiA OKGIIK_04345 0.31 +0.1 946,426 + caiA OKGIIK_04345 0.31 -0.9 946,426 + caiA OKGIIK_04345 0.31 -0.9 946,426 + caiA OKGIIK_04345 0.31 -2.5 946,426 + caiA OKGIIK_04345 0.31 -0.5 946,426 + caiA OKGIIK_04345 0.31 +0.9 946,426 + caiA OKGIIK_04345 0.31 +0.9 946,426 + caiA OKGIIK_04345 0.31 -0.5 946,426 + caiA OKGIIK_04345 0.31 +0.7 946,427 - caiA OKGIIK_04345 0.31 -0.2 946,427 - caiA OKGIIK_04345 0.31 -1.9 946,427 - caiA OKGIIK_04345 0.31 -1.0 946,427 - caiA OKGIIK_04345 0.31 -0.9 946,427 - caiA OKGIIK_04345 0.31 +0.4 946,427 - caiA OKGIIK_04345 0.31 -0.9 946,427 - caiA OKGIIK_04345 0.31 -1.0 946,427 - caiA OKGIIK_04345 0.31 -1.8 946,427 - caiA OKGIIK_04345 0.31 -1.5 946,427 - caiA OKGIIK_04345 0.31 -0.4 946,427 - caiA OKGIIK_04345 0.31 +0.1 946,427 - caiA OKGIIK_04345 0.31 +2.1 946,427 - caiA OKGIIK_04345 0.31 -0.7 946,475 + caiA OKGIIK_04345 0.33 +1.1 946,496 - caiA OKGIIK_04345 0.35 -1.3 946,496 - caiA OKGIIK_04345 0.35 +0.4 946,546 + caiA OKGIIK_04345 0.37 -0.5 946,546 + caiA OKGIIK_04345 0.37 +0.1 946,546 + caiA OKGIIK_04345 0.37 +0.2 946,547 - caiA OKGIIK_04345 0.37 +0.5 946,547 - caiA OKGIIK_04345 0.37 -0.4 946,547 - caiA OKGIIK_04345 0.37 -1.1 946,547 - caiA OKGIIK_04345 0.37 +1.2 946,547 - caiA OKGIIK_04345 0.37 -0.8 946,547 - caiA OKGIIK_04345 0.37 -1.3 946,547 - caiA OKGIIK_04345 0.37 +0.3 946,606 + caiA OKGIIK_04345 0.41 +0.5 946,606 + caiA OKGIIK_04345 0.41 -1.3 946,606 + caiA OKGIIK_04345 0.41 -1.4 946,666 + caiA OKGIIK_04345 0.44 +0.5 946,666 + caiA OKGIIK_04345 0.44 +0.2 946,666 + caiA OKGIIK_04345 0.44 -0.0 946,667 - caiA OKGIIK_04345 0.44 -0.9 946,667 - caiA OKGIIK_04345 0.44 +0.2 946,832 + caiA OKGIIK_04345 0.54 +0.6 946,833 - caiA OKGIIK_04345 0.54 +0.4 946,833 - caiA OKGIIK_04345 0.54 +0.1 946,833 - caiA OKGIIK_04345 0.54 +1.1 946,833 - caiA OKGIIK_04345 0.54 -0.3 946,833 - caiA OKGIIK_04345 0.54 +1.1 946,833 - caiA OKGIIK_04345 0.54 -1.1
Or see this region's nucleotide sequence