Experiment: R2A_PIPES pH 4.25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_04265 and OKGIIK_04270 are separated by 283 nucleotides OKGIIK_04270 and OKGIIK_04275 are separated by 144 nucleotides OKGIIK_04275 and OKGIIK_04280 are separated by 42 nucleotides
OKGIIK_04265: OKGIIK_04265 - hypothetical protein, at 931,160 to 931,948
_04265
OKGIIK_04270: OKGIIK_04270 - alkyl hydroperoxide reductase, at 932,232 to 932,807
_04270
OKGIIK_04275: OKGIIK_04275 - Transcriptional regulator, at 932,952 to 933,317
_04275
OKGIIK_04280: OKGIIK_04280 - hypothetical protein, at 933,360 to 933,692
_04280
Position (kb) 932
933 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 931.430 kb on + strand, within OKGIIK_04265 at 931.430 kb on + strand, within OKGIIK_04265 at 931.431 kb on - strand, within OKGIIK_04265 at 931.431 kb on - strand, within OKGIIK_04265 at 931.431 kb on - strand, within OKGIIK_04265 at 931.431 kb on - strand, within OKGIIK_04265 at 931.431 kb on - strand, within OKGIIK_04265 at 931.473 kb on + strand, within OKGIIK_04265 at 931.473 kb on + strand, within OKGIIK_04265 at 931.473 kb on + strand, within OKGIIK_04265 at 931.473 kb on + strand, within OKGIIK_04265 at 931.473 kb on + strand, within OKGIIK_04265 at 931.473 kb on + strand, within OKGIIK_04265 at 931.473 kb on + strand, within OKGIIK_04265 at 931.474 kb on - strand, within OKGIIK_04265 at 931.474 kb on - strand, within OKGIIK_04265 at 931.474 kb on - strand, within OKGIIK_04265 at 931.474 kb on - strand, within OKGIIK_04265 at 931.474 kb on - strand, within OKGIIK_04265 at 931.474 kb on - strand, within OKGIIK_04265 at 931.474 kb on - strand, within OKGIIK_04265 at 931.516 kb on + strand, within OKGIIK_04265 at 931.516 kb on + strand, within OKGIIK_04265 at 931.516 kb on + strand, within OKGIIK_04265 at 931.516 kb on + strand, within OKGIIK_04265 at 931.517 kb on - strand, within OKGIIK_04265 at 931.517 kb on - strand, within OKGIIK_04265 at 931.517 kb on - strand, within OKGIIK_04265 at 931.523 kb on + strand, within OKGIIK_04265 at 931.523 kb on + strand, within OKGIIK_04265 at 931.523 kb on + strand, within OKGIIK_04265 at 931.523 kb on + strand, within OKGIIK_04265 at 931.523 kb on + strand, within OKGIIK_04265 at 931.523 kb on + strand, within OKGIIK_04265 at 931.523 kb on + strand, within OKGIIK_04265 at 931.523 kb on + strand, within OKGIIK_04265 at 931.523 kb on + strand, within OKGIIK_04265 at 931.523 kb on + strand, within OKGIIK_04265 at 931.524 kb on - strand, within OKGIIK_04265 at 931.524 kb on - strand, within OKGIIK_04265 at 931.524 kb on - strand, within OKGIIK_04265 at 931.532 kb on + strand, within OKGIIK_04265 at 931.532 kb on + strand, within OKGIIK_04265 at 931.532 kb on + strand, within OKGIIK_04265 at 931.532 kb on + strand, within OKGIIK_04265 at 931.533 kb on - strand, within OKGIIK_04265 at 931.533 kb on - strand, within OKGIIK_04265 at 931.549 kb on + strand, within OKGIIK_04265 at 931.598 kb on + strand, within OKGIIK_04265 at 931.607 kb on + strand, within OKGIIK_04265 at 931.607 kb on + strand, within OKGIIK_04265 at 931.607 kb on + strand, within OKGIIK_04265 at 931.607 kb on + strand, within OKGIIK_04265 at 931.607 kb on + strand, within OKGIIK_04265 at 931.607 kb on + strand, within OKGIIK_04265 at 931.607 kb on + strand, within OKGIIK_04265 at 931.607 kb on + strand, within OKGIIK_04265 at 931.607 kb on + strand, within OKGIIK_04265 at 931.607 kb on + strand, within OKGIIK_04265 at 931.607 kb on + strand, within OKGIIK_04265 at 931.607 kb on + strand, within OKGIIK_04265 at 931.607 kb on + strand, within OKGIIK_04265 at 931.607 kb on + strand, within OKGIIK_04265 at 931.608 kb on - strand, within OKGIIK_04265 at 931.608 kb on - strand, within OKGIIK_04265 at 931.608 kb on - strand, within OKGIIK_04265 at 931.608 kb on - strand, within OKGIIK_04265 at 931.608 kb on - strand, within OKGIIK_04265 at 931.608 kb on - strand, within OKGIIK_04265 at 931.608 kb on - strand, within OKGIIK_04265 at 931.608 kb on - strand, within OKGIIK_04265 at 931.608 kb on - strand, within OKGIIK_04265 at 931.608 kb on - strand, within OKGIIK_04265 at 931.947 kb on - strand at 931.947 kb on - strand at 931.947 kb on - strand at 931.969 kb on + strand at 931.969 kb on + strand at 931.969 kb on + strand at 931.969 kb on + strand at 931.970 kb on - strand at 931.970 kb on - strand at 931.970 kb on - strand at 931.970 kb on - strand at 931.993 kb on + strand at 931.994 kb on - strand at 931.994 kb on - strand at 931.994 kb on - strand at 932.154 kb on + strand at 932.154 kb on + strand at 932.154 kb on + strand at 932.154 kb on + strand at 932.154 kb on + strand at 932.154 kb on + strand at 932.154 kb on + strand at 932.154 kb on + strand at 932.154 kb on + strand at 932.154 kb on + strand at 932.154 kb on + strand at 932.154 kb on + strand at 932.154 kb on + strand at 932.154 kb on + strand at 932.154 kb on + strand at 932.154 kb on + strand at 932.155 kb on - strand at 932.155 kb on - strand at 932.155 kb on - strand at 932.155 kb on - strand at 932.155 kb on - strand at 932.155 kb on - strand at 932.155 kb on - strand at 932.155 kb on - strand at 932.155 kb on - strand at 932.155 kb on - strand at 932.155 kb on - strand at 932.155 kb on - strand at 932.155 kb on - strand at 932.279 kb on + strand at 932.279 kb on + strand at 932.279 kb on + strand at 932.279 kb on + strand at 932.279 kb on + strand at 932.279 kb on + strand at 932.279 kb on + strand at 932.279 kb on + strand at 932.279 kb on + strand at 932.280 kb on - strand at 932.280 kb on - strand at 932.499 kb on + strand, within OKGIIK_04270 at 932.500 kb on - strand, within OKGIIK_04270 at 932.574 kb on + strand, within OKGIIK_04270 at 932.574 kb on + strand, within OKGIIK_04270 at 932.574 kb on + strand, within OKGIIK_04270 at 932.574 kb on + strand, within OKGIIK_04270 at 932.574 kb on + strand, within OKGIIK_04270 at 932.574 kb on + strand, within OKGIIK_04270 at 932.574 kb on + strand, within OKGIIK_04270 at 932.574 kb on + strand, within OKGIIK_04270 at 932.575 kb on - strand, within OKGIIK_04270 at 932.575 kb on - strand, within OKGIIK_04270 at 932.575 kb on - strand, within OKGIIK_04270 at 932.575 kb on - strand, within OKGIIK_04270 at 932.575 kb on - strand, within OKGIIK_04270 at 932.575 kb on - strand, within OKGIIK_04270 at 932.575 kb on - strand, within OKGIIK_04270 at 932.649 kb on + strand, within OKGIIK_04270 at 932.649 kb on + strand, within OKGIIK_04270 at 932.649 kb on + strand, within OKGIIK_04270 at 932.650 kb on - strand, within OKGIIK_04270 at 932.650 kb on - strand, within OKGIIK_04270 at 932.725 kb on - strand, within OKGIIK_04270 at 932.783 kb on - strand at 932.805 kb on + strand at 932.823 kb on + strand at 932.823 kb on + strand at 932.823 kb on + strand at 932.823 kb on + strand at 932.823 kb on + strand at 932.824 kb on - strand at 932.824 kb on - strand at 932.861 kb on - strand at 932.928 kb on + strand at 932.929 kb on - strand at 932.929 kb on - strand at 932.929 kb on - strand at 933.180 kb on + strand, within OKGIIK_04275 at 933.364 kb on + strand at 933.364 kb on + strand at 933.364 kb on + strand at 933.365 kb on - strand at 933.365 kb on - strand at 933.365 kb on - strand at 933.586 kb on + strand, within OKGIIK_04280 at 933.586 kb on + strand, within OKGIIK_04280 at 933.586 kb on + strand, within OKGIIK_04280 at 933.586 kb on + strand, within OKGIIK_04280 at 933.586 kb on + strand, within OKGIIK_04280 at 933.587 kb on - strand, within OKGIIK_04280 at 933.587 kb on - strand, within OKGIIK_04280 at 933.587 kb on - strand, within OKGIIK_04280 at 933.587 kb on - strand, within OKGIIK_04280 at 933.598 kb on + strand, within OKGIIK_04280 at 933.598 kb on + strand, within OKGIIK_04280 at 933.598 kb on + strand, within OKGIIK_04280 at 933.598 kb on + strand, within OKGIIK_04280 at 933.598 kb on + strand, within OKGIIK_04280 at 933.599 kb on - strand, within OKGIIK_04280 at 933.599 kb on - strand, within OKGIIK_04280 at 933.599 kb on - strand, within OKGIIK_04280 at 933.599 kb on - strand, within OKGIIK_04280 at 933.599 kb on - strand, within OKGIIK_04280 at 933.619 kb on + strand, within OKGIIK_04280 at 933.620 kb on - strand, within OKGIIK_04280 at 933.620 kb on - strand, within OKGIIK_04280 at 933.620 kb on - strand, within OKGIIK_04280 at 933.773 kb on + strand at 933.773 kb on + strand at 933.773 kb on + strand at 933.773 kb on + strand at 933.773 kb on + strand at 933.773 kb on + strand at 933.773 kb on + strand at 933.773 kb on + strand at 933.773 kb on + strand at 933.773 kb on + strand at 933.773 kb on + strand at 933.773 kb on + strand at 933.773 kb on + strand at 933.773 kb on + strand at 933.773 kb on + strand at 933.773 kb on + strand at 933.773 kb on + strand at 933.773 kb on + strand at 933.773 kb on + strand at 933.773 kb on + strand at 933.773 kb on + strand at 933.773 kb on + strand at 933.773 kb on + strand at 933.773 kb on + strand at 933.773 kb on + strand at 933.773 kb on + strand at 933.773 kb on + strand at 933.774 kb on - strand at 933.774 kb on - strand at 933.774 kb on - strand at 933.774 kb on - strand at 933.774 kb on - strand at 933.774 kb on - strand at 933.774 kb on - strand at 933.774 kb on - strand at 933.774 kb on - strand at 933.774 kb on - strand at 933.774 kb on - strand at 933.774 kb on - strand at 933.774 kb on - strand at 933.774 kb on - strand at 933.774 kb on - strand at 933.774 kb on - strand at 933.774 kb on - strand at 933.774 kb on - strand at 933.774 kb on - strand at 933.774 kb on - strand at 933.774 kb on - strand at 933.774 kb on - strand at 933.774 kb on - strand at 933.774 kb on - strand at 933.774 kb on - strand at 933.774 kb on - strand at 933.779 kb on + strand at 933.779 kb on + strand at 933.779 kb on + strand at 933.779 kb on + strand at 933.779 kb on + strand at 933.779 kb on + strand at 933.780 kb on - strand at 933.780 kb on - strand at 933.780 kb on - strand at 933.780 kb on - strand at 933.780 kb on - strand at 933.780 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.25 remove 931,430 + OKGIIK_04265 0.34 -0.5 931,430 + OKGIIK_04265 0.34 -0.3 931,431 - OKGIIK_04265 0.34 -0.2 931,431 - OKGIIK_04265 0.34 +0.3 931,431 - OKGIIK_04265 0.34 -1.7 931,431 - OKGIIK_04265 0.34 +0.1 931,431 - OKGIIK_04265 0.34 +0.2 931,473 + OKGIIK_04265 0.40 +1.1 931,473 + OKGIIK_04265 0.40 -0.9 931,473 + OKGIIK_04265 0.40 -0.2 931,473 + OKGIIK_04265 0.40 +0.9 931,473 + OKGIIK_04265 0.40 -0.5 931,473 + OKGIIK_04265 0.40 -0.3 931,473 + OKGIIK_04265 0.40 +1.1 931,474 - OKGIIK_04265 0.40 -0.7 931,474 - OKGIIK_04265 0.40 -2.3 931,474 - OKGIIK_04265 0.40 -0.5 931,474 - OKGIIK_04265 0.40 +3.4 931,474 - OKGIIK_04265 0.40 +0.7 931,474 - OKGIIK_04265 0.40 +0.6 931,474 - OKGIIK_04265 0.40 -0.5 931,516 + OKGIIK_04265 0.45 +0.1 931,516 + OKGIIK_04265 0.45 -0.3 931,516 + OKGIIK_04265 0.45 -1.5 931,516 + OKGIIK_04265 0.45 +1.5 931,517 - OKGIIK_04265 0.45 +1.5 931,517 - OKGIIK_04265 0.45 +0.8 931,517 - OKGIIK_04265 0.45 +0.2 931,523 + OKGIIK_04265 0.46 +0.5 931,523 + OKGIIK_04265 0.46 +0.6 931,523 + OKGIIK_04265 0.46 +1.6 931,523 + OKGIIK_04265 0.46 +0.1 931,523 + OKGIIK_04265 0.46 +0.5 931,523 + OKGIIK_04265 0.46 +0.6 931,523 + OKGIIK_04265 0.46 -0.3 931,523 + OKGIIK_04265 0.46 -0.4 931,523 + OKGIIK_04265 0.46 +0.6 931,523 + OKGIIK_04265 0.46 -0.2 931,524 - OKGIIK_04265 0.46 -0.3 931,524 - OKGIIK_04265 0.46 +1.1 931,524 - OKGIIK_04265 0.46 -0.1 931,532 + OKGIIK_04265 0.47 -2.3 931,532 + OKGIIK_04265 0.47 -0.5 931,532 + OKGIIK_04265 0.47 -0.2 931,532 + OKGIIK_04265 0.47 -1.8 931,533 - OKGIIK_04265 0.47 -1.3 931,533 - OKGIIK_04265 0.47 +1.4 931,549 + OKGIIK_04265 0.49 -1.7 931,598 + OKGIIK_04265 0.56 -0.1 931,607 + OKGIIK_04265 0.57 -0.5 931,607 + OKGIIK_04265 0.57 -0.5 931,607 + OKGIIK_04265 0.57 -1.5 931,607 + OKGIIK_04265 0.57 +0.7 931,607 + OKGIIK_04265 0.57 -0.7 931,607 + OKGIIK_04265 0.57 -0.7 931,607 + OKGIIK_04265 0.57 -0.7 931,607 + OKGIIK_04265 0.57 -2.1 931,607 + OKGIIK_04265 0.57 -2.0 931,607 + OKGIIK_04265 0.57 +0.1 931,607 + OKGIIK_04265 0.57 -1.4 931,607 + OKGIIK_04265 0.57 +2.1 931,607 + OKGIIK_04265 0.57 -0.1 931,607 + OKGIIK_04265 0.57 -1.5 931,608 - OKGIIK_04265 0.57 +0.4 931,608 - OKGIIK_04265 0.57 -0.7 931,608 - OKGIIK_04265 0.57 +1.1 931,608 - OKGIIK_04265 0.57 -0.9 931,608 - OKGIIK_04265 0.57 -0.9 931,608 - OKGIIK_04265 0.57 -0.5 931,608 - OKGIIK_04265 0.57 +0.2 931,608 - OKGIIK_04265 0.57 +0.4 931,608 - OKGIIK_04265 0.57 +0.6 931,608 - OKGIIK_04265 0.57 +0.5 931,947 - +0.6 931,947 - +0.6 931,947 - -0.6 931,969 + +0.2 931,969 + +0.3 931,969 + +0.7 931,969 + +0.8 931,970 - -0.9 931,970 - -1.9 931,970 - -0.3 931,970 - +0.1 931,993 + -1.4 931,994 - +1.1 931,994 - +0.9 931,994 - +0.3 932,154 + +0.5 932,154 + -0.5 932,154 + +1.1 932,154 + -0.7 932,154 + -0.6 932,154 + -0.9 932,154 + +0.9 932,154 + -0.1 932,154 + +0.4 932,154 + +1.5 932,154 + -1.9 932,154 + -0.9 932,154 + -0.8 932,154 + +0.8 932,154 + +0.6 932,154 + +1.6 932,155 - -0.7 932,155 - +0.5 932,155 - +1.1 932,155 - +0.6 932,155 - -0.8 932,155 - -1.1 932,155 - +0.5 932,155 - +0.5 932,155 - +2.6 932,155 - +0.1 932,155 - +0.6 932,155 - -1.5 932,155 - -1.3 932,279 + +0.4 932,279 + -0.5 932,279 + -0.5 932,279 + -0.5 932,279 + -0.4 932,279 + +0.8 932,279 + +1.2 932,279 + -0.0 932,279 + -0.5 932,280 - -0.4 932,280 - -0.1 932,499 + OKGIIK_04270 0.46 +0.5 932,500 - OKGIIK_04270 0.47 +1.9 932,574 + OKGIIK_04270 0.59 -0.1 932,574 + OKGIIK_04270 0.59 +1.1 932,574 + OKGIIK_04270 0.59 -0.9 932,574 + OKGIIK_04270 0.59 -0.5 932,574 + OKGIIK_04270 0.59 +1.4 932,574 + OKGIIK_04270 0.59 +0.1 932,574 + OKGIIK_04270 0.59 -0.6 932,574 + OKGIIK_04270 0.59 +0.5 932,575 - OKGIIK_04270 0.60 +1.8 932,575 - OKGIIK_04270 0.60 +2.1 932,575 - OKGIIK_04270 0.60 +0.6 932,575 - OKGIIK_04270 0.60 +1.1 932,575 - OKGIIK_04270 0.60 -0.3 932,575 - OKGIIK_04270 0.60 +3.6 932,575 - OKGIIK_04270 0.60 -0.2 932,649 + OKGIIK_04270 0.72 +1.0 932,649 + OKGIIK_04270 0.72 -0.9 932,649 + OKGIIK_04270 0.72 +1.1 932,650 - OKGIIK_04270 0.73 +0.1 932,650 - OKGIIK_04270 0.73 +0.5 932,725 - OKGIIK_04270 0.86 -1.3 932,783 - -0.5 932,805 + +0.8 932,823 + +2.6 932,823 + +0.1 932,823 + -0.4 932,823 + -0.9 932,823 + +1.4 932,824 - +0.7 932,824 - -0.5 932,861 - -0.5 932,928 + +0.2 932,929 - +0.7 932,929 - -1.3 932,929 - -0.2 933,180 + OKGIIK_04275 0.62 +0.1 933,364 + -2.3 933,364 + -1.9 933,364 + +0.6 933,365 - -0.5 933,365 - +3.1 933,365 - -0.7 933,586 + OKGIIK_04280 0.68 +1.2 933,586 + OKGIIK_04280 0.68 -0.8 933,586 + OKGIIK_04280 0.68 +1.0 933,586 + OKGIIK_04280 0.68 -0.5 933,586 + OKGIIK_04280 0.68 +1.5 933,587 - OKGIIK_04280 0.68 +0.1 933,587 - OKGIIK_04280 0.68 -0.2 933,587 - OKGIIK_04280 0.68 +0.3 933,587 - OKGIIK_04280 0.68 -1.7 933,598 + OKGIIK_04280 0.71 +0.5 933,598 + OKGIIK_04280 0.71 +1.2 933,598 + OKGIIK_04280 0.71 -0.0 933,598 + OKGIIK_04280 0.71 +0.1 933,598 + OKGIIK_04280 0.71 -0.2 933,599 - OKGIIK_04280 0.72 +0.6 933,599 - OKGIIK_04280 0.72 +0.0 933,599 - OKGIIK_04280 0.72 +0.3 933,599 - OKGIIK_04280 0.72 +0.3 933,599 - OKGIIK_04280 0.72 -1.2 933,619 + OKGIIK_04280 0.78 +0.1 933,620 - OKGIIK_04280 0.78 +1.5 933,620 - OKGIIK_04280 0.78 +0.7 933,620 - OKGIIK_04280 0.78 -0.5 933,773 + -1.3 933,773 + +1.2 933,773 + -0.9 933,773 + +0.7 933,773 + +0.8 933,773 + -0.8 933,773 + +0.4 933,773 + -0.7 933,773 + +0.8 933,773 + +0.2 933,773 + +0.1 933,773 + -1.1 933,773 + -0.5 933,773 + -0.1 933,773 + -1.3 933,773 + +1.8 933,773 + -0.1 933,773 + -1.1 933,773 + +0.1 933,773 + +0.1 933,773 + -0.4 933,773 + +0.1 933,773 + -0.7 933,773 + -0.9 933,773 + +0.6 933,773 + +0.1 933,773 + -0.1 933,774 - +2.1 933,774 - +0.2 933,774 - +0.5 933,774 - +1.1 933,774 - -0.7 933,774 - +1.1 933,774 - -0.0 933,774 - +0.3 933,774 - +0.1 933,774 - -0.1 933,774 - -1.3 933,774 - -1.1 933,774 - -0.2 933,774 - -1.1 933,774 - +1.4 933,774 - +2.1 933,774 - +0.7 933,774 - +0.7 933,774 - -1.2 933,774 - +3.1 933,774 - +0.7 933,774 - +0.7 933,774 - -1.1 933,774 - -1.4 933,774 - -0.3 933,774 - +1.0 933,779 + +0.1 933,779 + +0.9 933,779 + -0.1 933,779 + -0.8 933,779 + +0.3 933,779 + +0.4 933,780 - +0.3 933,780 - -2.4 933,780 - -0.5 933,780 - -1.4 933,780 - -0.9 933,780 - +1.1
Or see this region's nucleotide sequence