Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_03420

Experiment: R2A_PIPES pH 4.25

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_03415 and OKGIIK_03420 are separated by 20 nucleotidesOKGIIK_03420 and OKGIIK_03425 are separated by 84 nucleotidesOKGIIK_03425 and OKGIIK_03430 are separated by 28 nucleotides OKGIIK_03415: OKGIIK_03415 - Alpha/beta hydrolase, at 762,289 to 763,299 _03415 OKGIIK_03420: OKGIIK_03420 - hypothetical protein, at 763,320 to 763,457 _03420 OKGIIK_03425: OKGIIK_03425 - AraC family transcriptional regulator, at 763,542 to 764,378 _03425 OKGIIK_03430: OKGIIK_03430 - N-acetylmuramoyl-L-alanine amidase, at 764,407 to 764,961 _03430 Position (kb) 763 764Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 762.549 kb on - strand, within OKGIIK_03415at 762.599 kb on + strand, within OKGIIK_03415at 762.599 kb on + strand, within OKGIIK_03415at 762.600 kb on - strand, within OKGIIK_03415at 762.600 kb on - strand, within OKGIIK_03415at 762.600 kb on - strand, within OKGIIK_03415at 762.600 kb on - strand, within OKGIIK_03415at 762.600 kb on - strand, within OKGIIK_03415at 762.600 kb on - strand, within OKGIIK_03415at 762.641 kb on + strand, within OKGIIK_03415at 762.641 kb on + strand, within OKGIIK_03415at 762.641 kb on + strand, within OKGIIK_03415at 762.641 kb on + strand, within OKGIIK_03415at 762.641 kb on + strand, within OKGIIK_03415at 762.642 kb on - strand, within OKGIIK_03415at 762.642 kb on - strand, within OKGIIK_03415at 762.838 kb on + strand, within OKGIIK_03415at 762.838 kb on + strand, within OKGIIK_03415at 762.838 kb on + strand, within OKGIIK_03415at 762.838 kb on + strand, within OKGIIK_03415at 762.838 kb on + strand, within OKGIIK_03415at 762.838 kb on + strand, within OKGIIK_03415at 762.839 kb on - strand, within OKGIIK_03415at 762.839 kb on - strand, within OKGIIK_03415at 762.839 kb on - strand, within OKGIIK_03415at 762.839 kb on - strand, within OKGIIK_03415at 762.839 kb on - strand, within OKGIIK_03415at 762.971 kb on + strand, within OKGIIK_03415at 762.971 kb on + strand, within OKGIIK_03415at 762.971 kb on + strand, within OKGIIK_03415at 762.972 kb on - strand, within OKGIIK_03415at 762.972 kb on - strand, within OKGIIK_03415at 763.010 kb on + strand, within OKGIIK_03415at 763.134 kb on + strand, within OKGIIK_03415at 763.134 kb on + strand, within OKGIIK_03415at 763.134 kb on + strand, within OKGIIK_03415at 763.135 kb on - strand, within OKGIIK_03415at 763.135 kb on - strand, within OKGIIK_03415at 763.135 kb on - strand, within OKGIIK_03415at 763.135 kb on - strand, within OKGIIK_03415at 763.135 kb on - strand, within OKGIIK_03415at 763.135 kb on - strand, within OKGIIK_03415at 763.135 kb on - strand, within OKGIIK_03415at 763.135 kb on - strand, within OKGIIK_03415at 763.135 kb on - strand, within OKGIIK_03415at 763.135 kb on - strand, within OKGIIK_03415at 763.135 kb on - strand, within OKGIIK_03415at 763.135 kb on - strand, within OKGIIK_03415at 763.135 kb on - strand, within OKGIIK_03415at 763.135 kb on - strand, within OKGIIK_03415at 763.135 kb on - strand, within OKGIIK_03415at 763.135 kb on - strand, within OKGIIK_03415at 763.135 kb on - strand, within OKGIIK_03415at 763.137 kb on - strand, within OKGIIK_03415at 763.137 kb on - strand, within OKGIIK_03415at 763.137 kb on - strand, within OKGIIK_03415at 763.536 kb on - strandat 763.536 kb on - strandat 763.536 kb on - strandat 763.594 kb on + strandat 763.594 kb on + strandat 763.594 kb on + strandat 763.595 kb on - strandat 763.595 kb on - strandat 763.720 kb on + strand, within OKGIIK_03425at 763.726 kb on + strand, within OKGIIK_03425at 763.726 kb on + strand, within OKGIIK_03425at 763.726 kb on + strand, within OKGIIK_03425at 763.727 kb on - strand, within OKGIIK_03425at 763.768 kb on + strand, within OKGIIK_03425at 763.768 kb on + strand, within OKGIIK_03425at 763.768 kb on + strand, within OKGIIK_03425at 763.768 kb on + strand, within OKGIIK_03425at 763.769 kb on - strand, within OKGIIK_03425at 763.769 kb on - strand, within OKGIIK_03425at 763.769 kb on - strand, within OKGIIK_03425at 763.769 kb on - strand, within OKGIIK_03425at 764.161 kb on + strand, within OKGIIK_03425at 764.236 kb on + strand, within OKGIIK_03425at 764.236 kb on + strand, within OKGIIK_03425at 764.237 kb on - strand, within OKGIIK_03425at 764.237 kb on - strand, within OKGIIK_03425at 764.237 kb on - strand, within OKGIIK_03425at 764.408 kb on + strandat 764.408 kb on + strandat 764.408 kb on + strandat 764.408 kb on + strandat 764.408 kb on + strandat 764.409 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.25
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762,549 - OKGIIK_03415 0.26 -2.9
762,599 + OKGIIK_03415 0.31 +0.7
762,599 + OKGIIK_03415 0.31 -1.0
762,600 - OKGIIK_03415 0.31 -2.1
762,600 - OKGIIK_03415 0.31 -3.1
762,600 - OKGIIK_03415 0.31 +2.2
762,600 - OKGIIK_03415 0.31 +0.2
762,600 - OKGIIK_03415 0.31 -2.5
762,600 - OKGIIK_03415 0.31 -1.1
762,641 + OKGIIK_03415 0.35 -1.1
762,641 + OKGIIK_03415 0.35 -0.9
762,641 + OKGIIK_03415 0.35 -0.7
762,641 + OKGIIK_03415 0.35 -1.0
762,641 + OKGIIK_03415 0.35 -0.2
762,642 - OKGIIK_03415 0.35 +0.8
762,642 - OKGIIK_03415 0.35 +0.9
762,838 + OKGIIK_03415 0.54 +0.5
762,838 + OKGIIK_03415 0.54 -1.5
762,838 + OKGIIK_03415 0.54 -2.0
762,838 + OKGIIK_03415 0.54 +0.3
762,838 + OKGIIK_03415 0.54 -0.6
762,838 + OKGIIK_03415 0.54 -1.7
762,839 - OKGIIK_03415 0.54 -2.1
762,839 - OKGIIK_03415 0.54 -1.3
762,839 - OKGIIK_03415 0.54 +0.2
762,839 - OKGIIK_03415 0.54 -0.2
762,839 - OKGIIK_03415 0.54 -1.1
762,971 + OKGIIK_03415 0.67 -0.2
762,971 + OKGIIK_03415 0.67 +0.8
762,971 + OKGIIK_03415 0.67 +0.6
762,972 - OKGIIK_03415 0.68 -0.3
762,972 - OKGIIK_03415 0.68 -0.0
763,010 + OKGIIK_03415 0.71 -1.3
763,134 + OKGIIK_03415 0.84 +0.4
763,134 + OKGIIK_03415 0.84 -0.8
763,134 + OKGIIK_03415 0.84 +0.4
763,135 - OKGIIK_03415 0.84 +0.0
763,135 - OKGIIK_03415 0.84 +0.1
763,135 - OKGIIK_03415 0.84 +0.7
763,135 - OKGIIK_03415 0.84 +0.8
763,135 - OKGIIK_03415 0.84 -0.3
763,135 - OKGIIK_03415 0.84 -0.1
763,135 - OKGIIK_03415 0.84 -1.0
763,135 - OKGIIK_03415 0.84 -0.1
763,135 - OKGIIK_03415 0.84 +0.6
763,135 - OKGIIK_03415 0.84 +0.7
763,135 - OKGIIK_03415 0.84 +0.0
763,135 - OKGIIK_03415 0.84 -0.2
763,135 - OKGIIK_03415 0.84 -0.5
763,135 - OKGIIK_03415 0.84 -0.5
763,135 - OKGIIK_03415 0.84 +1.0
763,135 - OKGIIK_03415 0.84 -1.8
763,135 - OKGIIK_03415 0.84 -0.3
763,137 - OKGIIK_03415 0.84 -1.0
763,137 - OKGIIK_03415 0.84 +0.5
763,137 - OKGIIK_03415 0.84 -1.2
763,536 - -1.0
763,536 - -2.3
763,536 - -0.7
763,594 + -1.1
763,594 + +0.0
763,594 + +0.4
763,595 - -1.7
763,595 - -2.8
763,720 + OKGIIK_03425 0.21 +1.4
763,726 + OKGIIK_03425 0.22 -0.4
763,726 + OKGIIK_03425 0.22 +0.0
763,726 + OKGIIK_03425 0.22 +0.0
763,727 - OKGIIK_03425 0.22 -0.3
763,768 + OKGIIK_03425 0.27 -0.8
763,768 + OKGIIK_03425 0.27 +0.0
763,768 + OKGIIK_03425 0.27 +0.5
763,768 + OKGIIK_03425 0.27 -0.1
763,769 - OKGIIK_03425 0.27 +0.3
763,769 - OKGIIK_03425 0.27 -0.4
763,769 - OKGIIK_03425 0.27 -0.4
763,769 - OKGIIK_03425 0.27 -0.5
764,161 + OKGIIK_03425 0.74 -1.3
764,236 + OKGIIK_03425 0.83 -0.2
764,236 + OKGIIK_03425 0.83 -0.1
764,237 - OKGIIK_03425 0.83 -0.1
764,237 - OKGIIK_03425 0.83 -1.5
764,237 - OKGIIK_03425 0.83 +1.3
764,408 + +1.0
764,408 + +0.3
764,408 + -0.4
764,408 + -0.7
764,408 + -0.1
764,409 - -1.3

Or see this region's nucleotide sequence