Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_03115

Experiment: R2A_PIPES pH 4.25

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntuvrB and Val_trna are separated by 87 nucleotidesVal_trna and OKGIIK_03110 are separated by 309 nucleotidesOKGIIK_03110 and OKGIIK_03115 are separated by 86 nucleotidesOKGIIK_03115 and dapD are separated by 263 nucleotides OKGIIK_03100: uvrB - excinuclease ABC subunit UvrB, at 704,360 to 706,384 uvrB OKGIIK_03105: Val_trna - tRNA-Val, at 706,472 to 706,546 _trna OKGIIK_03110: OKGIIK_03110 - hypothetical protein, at 706,856 to 707,173 _03110 OKGIIK_03115: OKGIIK_03115 - hypothetical protein, at 707,260 to 707,541 _03115 OKGIIK_03120: dapD - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, at 707,805 to 708,632 dapD Position (kb) 707 708Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 706.271 kb on - strandat 706.298 kb on + strandat 706.298 kb on + strandat 706.298 kb on + strandat 706.298 kb on + strandat 706.298 kb on + strandat 706.298 kb on + strandat 706.298 kb on + strandat 706.298 kb on + strandat 706.298 kb on + strandat 706.298 kb on + strandat 706.298 kb on + strandat 706.298 kb on + strandat 706.298 kb on + strandat 706.298 kb on + strandat 706.298 kb on + strandat 706.298 kb on + strandat 706.298 kb on + strandat 706.298 kb on + strandat 706.298 kb on + strandat 706.298 kb on + strandat 706.298 kb on + strandat 706.299 kb on - strandat 706.299 kb on - strandat 706.299 kb on - strandat 706.299 kb on - strandat 706.299 kb on - strandat 706.299 kb on - strandat 706.299 kb on - strandat 706.299 kb on - strandat 706.299 kb on - strandat 706.299 kb on - strandat 706.299 kb on - strandat 706.299 kb on - strandat 706.299 kb on - strandat 706.299 kb on - strandat 706.299 kb on - strandat 706.299 kb on - strandat 706.299 kb on - strandat 706.299 kb on - strandat 706.299 kb on - strandat 706.299 kb on - strandat 706.299 kb on - strandat 706.299 kb on - strandat 706.299 kb on - strandat 706.410 kb on + strandat 706.410 kb on + strandat 706.716 kb on + strandat 706.717 kb on - strandat 706.787 kb on + strandat 706.787 kb on + strandat 706.787 kb on + strandat 706.788 kb on - strandat 706.788 kb on - strandat 706.788 kb on - strandat 706.788 kb on - strandat 706.788 kb on - strandat 706.788 kb on - strandat 706.788 kb on - strandat 706.788 kb on - strandat 706.788 kb on - strandat 706.788 kb on - strandat 706.828 kb on - strandat 706.857 kb on + strandat 706.857 kb on + strandat 706.857 kb on + strandat 706.857 kb on + strandat 706.857 kb on + strandat 706.857 kb on + strandat 706.857 kb on + strandat 706.857 kb on + strandat 706.857 kb on + strandat 706.858 kb on - strandat 706.858 kb on - strandat 706.858 kb on - strandat 706.858 kb on - strandat 707.211 kb on + strandat 707.211 kb on + strandat 707.211 kb on + strandat 707.211 kb on + strandat 707.211 kb on + strandat 707.212 kb on - strandat 707.212 kb on - strandat 707.212 kb on - strandat 707.261 kb on + strandat 707.261 kb on + strandat 707.261 kb on + strandat 707.261 kb on + strandat 707.261 kb on + strandat 707.261 kb on + strandat 707.261 kb on + strandat 707.261 kb on + strandat 707.261 kb on + strandat 707.262 kb on - strandat 707.262 kb on - strandat 707.262 kb on - strandat 707.262 kb on - strandat 707.262 kb on - strandat 707.262 kb on - strandat 707.262 kb on - strandat 707.291 kb on + strand, within OKGIIK_03115at 707.291 kb on + strand, within OKGIIK_03115at 707.291 kb on + strand, within OKGIIK_03115at 707.291 kb on + strand, within OKGIIK_03115at 707.291 kb on + strand, within OKGIIK_03115at 707.291 kb on + strand, within OKGIIK_03115at 707.291 kb on + strand, within OKGIIK_03115at 707.291 kb on + strand, within OKGIIK_03115at 707.291 kb on + strand, within OKGIIK_03115at 707.291 kb on + strand, within OKGIIK_03115at 707.291 kb on + strand, within OKGIIK_03115at 707.291 kb on + strand, within OKGIIK_03115at 707.291 kb on + strand, within OKGIIK_03115at 707.291 kb on + strand, within OKGIIK_03115at 707.291 kb on + strand, within OKGIIK_03115at 707.291 kb on + strand, within OKGIIK_03115at 707.291 kb on + strand, within OKGIIK_03115at 707.292 kb on - strand, within OKGIIK_03115at 707.292 kb on - strand, within OKGIIK_03115at 707.292 kb on - strand, within OKGIIK_03115at 707.292 kb on - strand, within OKGIIK_03115at 707.292 kb on - strand, within OKGIIK_03115at 707.292 kb on - strand, within OKGIIK_03115at 707.292 kb on - strand, within OKGIIK_03115at 707.292 kb on - strand, within OKGIIK_03115at 707.292 kb on - strand, within OKGIIK_03115at 707.292 kb on - strand, within OKGIIK_03115at 707.435 kb on + strand, within OKGIIK_03115at 707.435 kb on + strand, within OKGIIK_03115at 707.435 kb on + strand, within OKGIIK_03115at 707.435 kb on + strand, within OKGIIK_03115at 707.435 kb on + strand, within OKGIIK_03115at 707.435 kb on + strand, within OKGIIK_03115at 707.435 kb on + strand, within OKGIIK_03115at 707.435 kb on + strand, within OKGIIK_03115at 707.435 kb on + strand, within OKGIIK_03115at 707.435 kb on + strand, within OKGIIK_03115at 707.436 kb on - strand, within OKGIIK_03115at 707.436 kb on - strand, within OKGIIK_03115at 707.436 kb on - strand, within OKGIIK_03115at 707.436 kb on - strand, within OKGIIK_03115at 707.436 kb on - strand, within OKGIIK_03115at 707.436 kb on - strand, within OKGIIK_03115at 707.436 kb on - strand, within OKGIIK_03115at 707.436 kb on - strand, within OKGIIK_03115at 707.436 kb on - strand, within OKGIIK_03115at 707.436 kb on - strand, within OKGIIK_03115at 707.436 kb on - strand, within OKGIIK_03115at 707.436 kb on - strand, within OKGIIK_03115at 707.436 kb on - strand, within OKGIIK_03115at 707.436 kb on - strand, within OKGIIK_03115at 707.436 kb on - strand, within OKGIIK_03115at 707.754 kb on + strandat 707.754 kb on + strandat 707.754 kb on + strandat 707.754 kb on + strandat 707.754 kb on + strandat 707.754 kb on + strandat 707.754 kb on + strandat 707.754 kb on + strandat 707.754 kb on + strandat 707.754 kb on + strandat 707.754 kb on + strandat 707.755 kb on - strandat 707.755 kb on - strandat 707.755 kb on - strandat 707.755 kb on - strandat 707.755 kb on - strandat 707.755 kb on - strandat 707.755 kb on - strandat 707.755 kb on - strandat 707.755 kb on - strandat 707.755 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.25
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706,271 - -2.3
706,298 + -0.7
706,298 + +1.0
706,298 + -1.6
706,298 + -1.1
706,298 + -1.6
706,298 + -0.9
706,298 + +1.5
706,298 + +1.0
706,298 + +1.0
706,298 + +2.6
706,298 + +0.1
706,298 + -0.1
706,298 + -0.3
706,298 + +1.0
706,298 + +0.1
706,298 + +1.0
706,298 + +2.0
706,298 + -1.0
706,298 + -1.0
706,298 + +0.4
706,298 + -1.1
706,299 - -1.0
706,299 - -0.3
706,299 - -0.2
706,299 - -1.0
706,299 - +0.2
706,299 - -0.4
706,299 - +1.3
706,299 - +0.4
706,299 - -0.6
706,299 - -1.3
706,299 - -0.7
706,299 - +0.0
706,299 - +0.0
706,299 - -1.3
706,299 - -0.6
706,299 - +0.2
706,299 - +1.0
706,299 - +2.0
706,299 - +1.0
706,299 - -0.7
706,299 - -1.7
706,299 - -0.7
706,299 - +0.4
706,410 + +1.0
706,410 + +0.9
706,716 + -0.4
706,717 - -3.0
706,787 + -1.6
706,787 + -1.3
706,787 + +0.2
706,788 - +0.0
706,788 - -1.1
706,788 - +0.3
706,788 - -0.6
706,788 - -1.8
706,788 - -0.4
706,788 - +0.0
706,788 - -1.2
706,788 - -1.8
706,788 - +0.5
706,828 - -1.3
706,857 + +0.4
706,857 + +0.9
706,857 + -0.1
706,857 + -0.8
706,857 + +2.6
706,857 + -1.2
706,857 + -0.4
706,857 + -1.1
706,857 + -1.6
706,858 - +0.4
706,858 - -0.4
706,858 - -0.6
706,858 - -1.0
707,211 + +1.6
707,211 + -2.0
707,211 + +0.7
707,211 + -1.1
707,211 + +1.4
707,212 - +0.0
707,212 - -0.6
707,212 - +1.0
707,261 + -0.6
707,261 + -1.3
707,261 + +1.0
707,261 + -1.1
707,261 + +0.2
707,261 + -1.0
707,261 + +0.6
707,261 + +0.2
707,261 + -1.0
707,262 - -1.1
707,262 - +1.3
707,262 - +0.2
707,262 - -0.6
707,262 - +0.0
707,262 - +1.3
707,262 - -0.3
707,291 + OKGIIK_03115 0.11 +1.7
707,291 + OKGIIK_03115 0.11 -1.8
707,291 + OKGIIK_03115 0.11 +1.3
707,291 + OKGIIK_03115 0.11 +0.3
707,291 + OKGIIK_03115 0.11 +0.8
707,291 + OKGIIK_03115 0.11 +0.1
707,291 + OKGIIK_03115 0.11 +0.2
707,291 + OKGIIK_03115 0.11 +1.4
707,291 + OKGIIK_03115 0.11 +0.4
707,291 + OKGIIK_03115 0.11 -0.2
707,291 + OKGIIK_03115 0.11 -2.1
707,291 + OKGIIK_03115 0.11 -2.1
707,291 + OKGIIK_03115 0.11 +1.5
707,291 + OKGIIK_03115 0.11 +2.6
707,291 + OKGIIK_03115 0.11 +0.8
707,291 + OKGIIK_03115 0.11 -0.7
707,291 + OKGIIK_03115 0.11 -0.7
707,292 - OKGIIK_03115 0.11 +0.0
707,292 - OKGIIK_03115 0.11 +0.0
707,292 - OKGIIK_03115 0.11 -1.6
707,292 - OKGIIK_03115 0.11 -1.4
707,292 - OKGIIK_03115 0.11 -0.5
707,292 - OKGIIK_03115 0.11 -2.4
707,292 - OKGIIK_03115 0.11 +1.4
707,292 - OKGIIK_03115 0.11 -1.3
707,292 - OKGIIK_03115 0.11 +0.5
707,292 - OKGIIK_03115 0.11 -0.3
707,435 + OKGIIK_03115 0.62 +1.6
707,435 + OKGIIK_03115 0.62 +0.0
707,435 + OKGIIK_03115 0.62 +0.2
707,435 + OKGIIK_03115 0.62 -1.3
707,435 + OKGIIK_03115 0.62 -0.7
707,435 + OKGIIK_03115 0.62 -0.2
707,435 + OKGIIK_03115 0.62 +0.3
707,435 + OKGIIK_03115 0.62 +0.4
707,435 + OKGIIK_03115 0.62 +2.2
707,435 + OKGIIK_03115 0.62 +1.2
707,436 - OKGIIK_03115 0.62 +0.3
707,436 - OKGIIK_03115 0.62 +0.5
707,436 - OKGIIK_03115 0.62 -1.0
707,436 - OKGIIK_03115 0.62 -1.6
707,436 - OKGIIK_03115 0.62 +1.4
707,436 - OKGIIK_03115 0.62 -0.6
707,436 - OKGIIK_03115 0.62 -1.3
707,436 - OKGIIK_03115 0.62 +0.4
707,436 - OKGIIK_03115 0.62 +0.7
707,436 - OKGIIK_03115 0.62 -0.1
707,436 - OKGIIK_03115 0.62 +2.1
707,436 - OKGIIK_03115 0.62 -1.6
707,436 - OKGIIK_03115 0.62 -0.1
707,436 - OKGIIK_03115 0.62 -0.6
707,436 - OKGIIK_03115 0.62 +0.6
707,754 + -0.0
707,754 + +0.4
707,754 + -0.1
707,754 + +0.0
707,754 + -1.3
707,754 + +0.6
707,754 + +0.7
707,754 + -2.0
707,754 + -0.3
707,754 + +0.3
707,754 + +0.5
707,755 - +0.0
707,755 - +2.3
707,755 - +0.8
707,755 - +0.3
707,755 - -1.6
707,755 - +0.6
707,755 - +0.7
707,755 - +2.0
707,755 - +1.0
707,755 - +0.0

Or see this region's nucleotide sequence