Experiment: R2A_PIPES pH 4.25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_02875 and OKGIIK_02880 are separated by 160 nucleotides OKGIIK_02880 and ompR are separated by 13 nucleotides ompR and OKGIIK_02890 are separated by 17 nucleotides OKGIIK_02890 and OKGIIK_02895 are separated by 118 nucleotides OKGIIK_02895 and OKGIIK_02900 are separated by 12 nucleotides
OKGIIK_02875: OKGIIK_02875 - Flg-hook domain-containing protein, at 659,264 to 660,406
_02875
OKGIIK_02880: OKGIIK_02880 - STAS domain-containing protein, at 660,567 to 660,926
_02880
OKGIIK_02885: ompR - response regulator, at 660,940 to 661,302
ompR
OKGIIK_02890: OKGIIK_02890 - Histidine kinase, at 661,320 to 663,293
_02890
OKGIIK_02895: OKGIIK_02895 - Chemotaxis protein CheW, at 663,412 to 663,939
_02895
OKGIIK_02900: OKGIIK_02900 - Chemotaxis protein, at 663,952 to 665,673
_02900
Position (kb) 661
662
663
664 Strain fitness (log2 ratio) -2
-1
0
1
2 at 660.525 kb on + strand at 660.525 kb on + strand at 661.109 kb on + strand, within ompR at 661.110 kb on - strand, within ompR at 661.110 kb on - strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 662.910 kb on + strand, within OKGIIK_02890 at 662.910 kb on + strand, within OKGIIK_02890 at 662.910 kb on + strand, within OKGIIK_02890 at 662.910 kb on + strand, within OKGIIK_02890 at 662.910 kb on + strand, within OKGIIK_02890 at 662.910 kb on + strand, within OKGIIK_02890 at 662.910 kb on + strand, within OKGIIK_02890 at 662.911 kb on - strand, within OKGIIK_02890 at 662.911 kb on - strand, within OKGIIK_02890 at 662.911 kb on - strand, within OKGIIK_02890 at 662.911 kb on - strand, within OKGIIK_02890 at 662.911 kb on - strand, within OKGIIK_02890 at 662.911 kb on - strand, within OKGIIK_02890 at 662.911 kb on - strand, within OKGIIK_02890 at 662.911 kb on - strand, within OKGIIK_02890 at 662.911 kb on - strand, within OKGIIK_02890 at 662.911 kb on - strand, within OKGIIK_02890 at 662.911 kb on - strand, within OKGIIK_02890 at 662.911 kb on - strand, within OKGIIK_02890 at 662.911 kb on - strand, within OKGIIK_02890 at 662.911 kb on - strand, within OKGIIK_02890 at 662.911 kb on - strand, within OKGIIK_02890 at 662.911 kb on - strand, within OKGIIK_02890 at 663.012 kb on + strand, within OKGIIK_02890 at 663.012 kb on + strand, within OKGIIK_02890 at 663.012 kb on + strand, within OKGIIK_02890 at 663.012 kb on + strand, within OKGIIK_02890 at 663.013 kb on - strand, within OKGIIK_02890 at 663.013 kb on - strand, within OKGIIK_02890 at 663.013 kb on - strand, within OKGIIK_02890 at 663.013 kb on - strand, within OKGIIK_02890 at 663.180 kb on + strand at 663.180 kb on + strand at 663.180 kb on + strand at 663.180 kb on + strand at 663.180 kb on + strand at 663.181 kb on - strand at 663.181 kb on - strand at 663.472 kb on + strand, within OKGIIK_02895 at 663.472 kb on + strand, within OKGIIK_02895 at 663.472 kb on + strand, within OKGIIK_02895 at 663.472 kb on + strand, within OKGIIK_02895 at 663.472 kb on + strand, within OKGIIK_02895 at 663.472 kb on + strand, within OKGIIK_02895 at 663.472 kb on + strand, within OKGIIK_02895 at 663.472 kb on + strand, within OKGIIK_02895 at 663.472 kb on + strand, within OKGIIK_02895 at 663.472 kb on + strand, within OKGIIK_02895 at 663.473 kb on - strand, within OKGIIK_02895 at 663.473 kb on - strand, within OKGIIK_02895 at 663.473 kb on - strand, within OKGIIK_02895 at 663.473 kb on - strand, within OKGIIK_02895 at 663.473 kb on - strand, within OKGIIK_02895 at 663.473 kb on - strand, within OKGIIK_02895 at 663.473 kb on - strand, within OKGIIK_02895 at 663.473 kb on - strand, within OKGIIK_02895 at 663.473 kb on - strand, within OKGIIK_02895 at 663.473 kb on - strand, within OKGIIK_02895 at 663.473 kb on - strand, within OKGIIK_02895 at 663.502 kb on + strand, within OKGIIK_02895 at 663.503 kb on - strand, within OKGIIK_02895 at 663.524 kb on + strand, within OKGIIK_02895 at 663.577 kb on + strand, within OKGIIK_02895 at 663.577 kb on + strand, within OKGIIK_02895 at 663.577 kb on + strand, within OKGIIK_02895 at 663.577 kb on + strand, within OKGIIK_02895 at 663.577 kb on + strand, within OKGIIK_02895 at 663.578 kb on - strand, within OKGIIK_02895 at 663.578 kb on - strand, within OKGIIK_02895 at 663.578 kb on - strand, within OKGIIK_02895 at 663.578 kb on - strand, within OKGIIK_02895 at 663.578 kb on - strand, within OKGIIK_02895 at 663.578 kb on - strand, within OKGIIK_02895 at 663.578 kb on - strand, within OKGIIK_02895 at 663.578 kb on - strand, within OKGIIK_02895 at 663.578 kb on - strand, within OKGIIK_02895 at 663.578 kb on - strand, within OKGIIK_02895 at 663.578 kb on - strand, within OKGIIK_02895 at 663.661 kb on + strand, within OKGIIK_02895 at 663.661 kb on + strand, within OKGIIK_02895 at 663.661 kb on + strand, within OKGIIK_02895 at 663.662 kb on - strand, within OKGIIK_02895 at 663.662 kb on - strand, within OKGIIK_02895 at 663.662 kb on - strand, within OKGIIK_02895 at 663.805 kb on + strand, within OKGIIK_02895 at 663.806 kb on - strand, within OKGIIK_02895 at 663.923 kb on + strand at 663.923 kb on + strand at 663.923 kb on + strand at 663.923 kb on + strand at 663.923 kb on + strand at 663.923 kb on + strand at 663.924 kb on - strand at 663.924 kb on - strand at 663.924 kb on - strand at 663.924 kb on - strand at 663.924 kb on - strand at 663.924 kb on - strand at 663.924 kb on - strand at 663.924 kb on - strand at 663.924 kb on - strand at 663.924 kb on - strand at 663.929 kb on - strand at 664.016 kb on + strand at 664.105 kb on + strand at 664.105 kb on + strand at 664.105 kb on + strand at 664.105 kb on + strand at 664.105 kb on + strand at 664.105 kb on + strand at 664.105 kb on + strand at 664.105 kb on + strand at 664.105 kb on + strand at 664.105 kb on + strand at 664.105 kb on + strand at 664.105 kb on + strand at 664.105 kb on + strand at 664.105 kb on + strand at 664.105 kb on + strand at 664.105 kb on + strand at 664.106 kb on - strand at 664.106 kb on - strand at 664.106 kb on - strand at 664.106 kb on - strand at 664.106 kb on - strand at 664.106 kb on - strand at 664.106 kb on - strand at 664.106 kb on - strand at 664.106 kb on - strand at 664.106 kb on - strand at 664.106 kb on - strand at 664.106 kb on - strand at 664.106 kb on - strand at 664.246 kb on + strand, within OKGIIK_02900 at 664.246 kb on + strand, within OKGIIK_02900 at 664.246 kb on + strand, within OKGIIK_02900 at 664.246 kb on + strand, within OKGIIK_02900 at 664.246 kb on + strand, within OKGIIK_02900 at 664.247 kb on - strand, within OKGIIK_02900 at 664.247 kb on - strand, within OKGIIK_02900 at 664.247 kb on - strand, within OKGIIK_02900 at 664.247 kb on - strand, within OKGIIK_02900 at 664.247 kb on - strand, within OKGIIK_02900 at 664.247 kb on - strand, within OKGIIK_02900 at 664.247 kb on - strand, within OKGIIK_02900 at 664.247 kb on - strand, within OKGIIK_02900
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.25 remove 660,525 + +0.3 660,525 + -1.8 661,109 + ompR OKGIIK_02885 0.47 +0.8 661,110 - ompR OKGIIK_02885 0.47 +1.3 661,110 - ompR OKGIIK_02885 0.47 -1.1 661,156 + ompR OKGIIK_02885 0.60 +0.8 661,156 + ompR OKGIIK_02885 0.60 -1.0 661,156 + ompR OKGIIK_02885 0.60 +0.6 661,156 + ompR OKGIIK_02885 0.60 +0.4 661,156 + ompR OKGIIK_02885 0.60 -1.6 661,156 + ompR OKGIIK_02885 0.60 +0.3 661,156 + ompR OKGIIK_02885 0.60 -1.0 661,156 + ompR OKGIIK_02885 0.60 +0.2 661,156 + ompR OKGIIK_02885 0.60 +0.8 661,156 + ompR OKGIIK_02885 0.60 +1.3 661,156 + ompR OKGIIK_02885 0.60 -1.3 661,156 + ompR OKGIIK_02885 0.60 +1.0 661,156 + ompR OKGIIK_02885 0.60 -1.0 661,156 + ompR OKGIIK_02885 0.60 +1.6 661,156 + ompR OKGIIK_02885 0.60 +0.7 661,156 + ompR OKGIIK_02885 0.60 +1.1 661,156 + ompR OKGIIK_02885 0.60 +1.4 661,156 + ompR OKGIIK_02885 0.60 -0.6 661,156 + ompR OKGIIK_02885 0.60 -1.0 661,156 + ompR OKGIIK_02885 0.60 +0.8 661,156 + ompR OKGIIK_02885 0.60 -0.3 661,156 + ompR OKGIIK_02885 0.60 -0.8 661,157 - ompR OKGIIK_02885 0.60 +0.5 661,157 - ompR OKGIIK_02885 0.60 -0.3 661,157 - ompR OKGIIK_02885 0.60 +0.3 661,157 - ompR OKGIIK_02885 0.60 +1.4 661,157 - ompR OKGIIK_02885 0.60 +1.3 661,157 - ompR OKGIIK_02885 0.60 +0.2 661,157 - ompR OKGIIK_02885 0.60 -0.1 661,157 - ompR OKGIIK_02885 0.60 -0.8 661,157 - ompR OKGIIK_02885 0.60 +0.2 661,157 - ompR OKGIIK_02885 0.60 -1.7 661,157 - ompR OKGIIK_02885 0.60 +0.5 661,157 - ompR OKGIIK_02885 0.60 +0.8 661,157 - ompR OKGIIK_02885 0.60 +0.1 661,157 - ompR OKGIIK_02885 0.60 +1.2 661,157 - ompR OKGIIK_02885 0.60 -0.4 661,157 - ompR OKGIIK_02885 0.60 +0.3 661,157 - ompR OKGIIK_02885 0.60 +0.3 661,157 - ompR OKGIIK_02885 0.60 -0.1 661,157 - ompR OKGIIK_02885 0.60 +0.0 661,157 - ompR OKGIIK_02885 0.60 +1.0 661,157 - ompR OKGIIK_02885 0.60 +1.6 662,910 + OKGIIK_02890 0.81 -1.3 662,910 + OKGIIK_02890 0.81 -1.0 662,910 + OKGIIK_02890 0.81 -0.3 662,910 + OKGIIK_02890 0.81 -0.5 662,910 + OKGIIK_02890 0.81 +0.0 662,910 + OKGIIK_02890 0.81 +0.4 662,910 + OKGIIK_02890 0.81 -0.9 662,911 - OKGIIK_02890 0.81 +1.0 662,911 - OKGIIK_02890 0.81 +0.4 662,911 - OKGIIK_02890 0.81 -1.3 662,911 - OKGIIK_02890 0.81 -0.3 662,911 - OKGIIK_02890 0.81 +0.0 662,911 - OKGIIK_02890 0.81 +0.3 662,911 - OKGIIK_02890 0.81 +0.2 662,911 - OKGIIK_02890 0.81 +1.4 662,911 - OKGIIK_02890 0.81 +0.2 662,911 - OKGIIK_02890 0.81 +0.9 662,911 - OKGIIK_02890 0.81 +1.6 662,911 - OKGIIK_02890 0.81 -1.3 662,911 - OKGIIK_02890 0.81 +0.5 662,911 - OKGIIK_02890 0.81 -0.2 662,911 - OKGIIK_02890 0.81 +0.3 662,911 - OKGIIK_02890 0.81 +1.5 663,012 + OKGIIK_02890 0.86 +0.5 663,012 + OKGIIK_02890 0.86 -1.2 663,012 + OKGIIK_02890 0.86 -0.4 663,012 + OKGIIK_02890 0.86 +0.6 663,013 - OKGIIK_02890 0.86 +1.4 663,013 - OKGIIK_02890 0.86 -0.3 663,013 - OKGIIK_02890 0.86 +1.3 663,013 - OKGIIK_02890 0.86 -1.0 663,180 + +0.6 663,180 + +1.7 663,180 + -1.7 663,180 + -0.9 663,180 + -0.5 663,181 - +1.0 663,181 - -0.5 663,472 + OKGIIK_02895 0.11 +0.5 663,472 + OKGIIK_02895 0.11 +1.5 663,472 + OKGIIK_02895 0.11 +0.4 663,472 + OKGIIK_02895 0.11 -2.1 663,472 + OKGIIK_02895 0.11 +0.2 663,472 + OKGIIK_02895 0.11 +0.4 663,472 + OKGIIK_02895 0.11 -0.1 663,472 + OKGIIK_02895 0.11 -1.6 663,472 + OKGIIK_02895 0.11 -1.0 663,472 + OKGIIK_02895 0.11 +0.4 663,473 - OKGIIK_02895 0.12 +0.7 663,473 - OKGIIK_02895 0.12 +0.7 663,473 - OKGIIK_02895 0.12 -2.3 663,473 - OKGIIK_02895 0.12 -0.8 663,473 - OKGIIK_02895 0.12 -1.6 663,473 - OKGIIK_02895 0.12 +1.0 663,473 - OKGIIK_02895 0.12 +0.9 663,473 - OKGIIK_02895 0.12 -0.6 663,473 - OKGIIK_02895 0.12 +0.5 663,473 - OKGIIK_02895 0.12 +1.3 663,473 - OKGIIK_02895 0.12 +2.0 663,502 + OKGIIK_02895 0.17 -0.1 663,503 - OKGIIK_02895 0.17 -0.0 663,524 + OKGIIK_02895 0.21 -1.1 663,577 + OKGIIK_02895 0.31 -0.3 663,577 + OKGIIK_02895 0.31 -0.3 663,577 + OKGIIK_02895 0.31 -0.7 663,577 + OKGIIK_02895 0.31 +1.6 663,577 + OKGIIK_02895 0.31 -0.1 663,578 - OKGIIK_02895 0.31 -0.1 663,578 - OKGIIK_02895 0.31 +0.3 663,578 - OKGIIK_02895 0.31 -0.4 663,578 - OKGIIK_02895 0.31 +0.4 663,578 - OKGIIK_02895 0.31 -0.6 663,578 - OKGIIK_02895 0.31 -1.3 663,578 - OKGIIK_02895 0.31 +0.0 663,578 - OKGIIK_02895 0.31 +0.5 663,578 - OKGIIK_02895 0.31 +0.7 663,578 - OKGIIK_02895 0.31 +2.2 663,578 - OKGIIK_02895 0.31 -1.6 663,661 + OKGIIK_02895 0.47 -1.1 663,661 + OKGIIK_02895 0.47 +0.4 663,661 + OKGIIK_02895 0.47 +1.6 663,662 - OKGIIK_02895 0.47 +0.1 663,662 - OKGIIK_02895 0.47 +0.2 663,662 - OKGIIK_02895 0.47 -0.1 663,805 + OKGIIK_02895 0.74 +1.2 663,806 - OKGIIK_02895 0.75 +0.2 663,923 + +1.6 663,923 + -0.3 663,923 + -0.2 663,923 + +1.0 663,923 + -0.4 663,923 + +1.2 663,924 - +1.0 663,924 - -0.4 663,924 - +0.0 663,924 - -0.3 663,924 - +0.7 663,924 - -0.1 663,924 - +0.1 663,924 - +0.1 663,924 - +0.0 663,924 - -1.0 663,929 - -1.1 664,016 + -0.8 664,105 + +0.6 664,105 + +0.9 664,105 + +0.0 664,105 + -0.2 664,105 + -0.2 664,105 + -0.5 664,105 + -0.6 664,105 + +0.3 664,105 + +0.2 664,105 + +1.0 664,105 + -0.4 664,105 + +0.0 664,105 + +0.0 664,105 + -0.6 664,105 + -0.2 664,105 + -0.3 664,106 - -0.1 664,106 - -1.8 664,106 - +1.0 664,106 - -0.6 664,106 - -0.6 664,106 - +1.0 664,106 - +0.1 664,106 - -1.1 664,106 - -0.8 664,106 - +1.5 664,106 - -0.3 664,106 - -0.4 664,106 - -0.1 664,246 + OKGIIK_02900 0.17 +0.2 664,246 + OKGIIK_02900 0.17 -1.3 664,246 + OKGIIK_02900 0.17 -1.1 664,246 + OKGIIK_02900 0.17 -0.3 664,246 + OKGIIK_02900 0.17 +0.4 664,247 - OKGIIK_02900 0.17 +0.7 664,247 - OKGIIK_02900 0.17 -0.9 664,247 - OKGIIK_02900 0.17 +0.4 664,247 - OKGIIK_02900 0.17 +0.2 664,247 - OKGIIK_02900 0.17 +0.7 664,247 - OKGIIK_02900 0.17 +0.4 664,247 - OKGIIK_02900 0.17 -0.0 664,247 - OKGIIK_02900 0.17 +0.6
Or see this region's nucleotide sequence