Experiment: R2A_PIPES pH 4.25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_02875 and OKGIIK_02880 are separated by 160 nucleotides OKGIIK_02880 and ompR are separated by 13 nucleotides ompR and OKGIIK_02890 are separated by 17 nucleotides
OKGIIK_02875: OKGIIK_02875 - Flg-hook domain-containing protein, at 659,264 to 660,406
_02875
OKGIIK_02880: OKGIIK_02880 - STAS domain-containing protein, at 660,567 to 660,926
_02880
OKGIIK_02885: ompR - response regulator, at 660,940 to 661,302
ompR
OKGIIK_02890: OKGIIK_02890 - Histidine kinase, at 661,320 to 663,293
_02890
Position (kb) 660
661
662 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 660.096 kb on + strand, within OKGIIK_02875 at 660.236 kb on + strand, within OKGIIK_02875 at 660.236 kb on + strand, within OKGIIK_02875 at 660.236 kb on + strand, within OKGIIK_02875 at 660.236 kb on + strand, within OKGIIK_02875 at 660.236 kb on + strand, within OKGIIK_02875 at 660.236 kb on + strand, within OKGIIK_02875 at 660.236 kb on + strand, within OKGIIK_02875 at 660.237 kb on - strand, within OKGIIK_02875 at 660.237 kb on - strand, within OKGIIK_02875 at 660.237 kb on - strand, within OKGIIK_02875 at 660.237 kb on - strand, within OKGIIK_02875 at 660.237 kb on - strand, within OKGIIK_02875 at 660.501 kb on + strand at 660.525 kb on + strand at 660.594 kb on - strand at 660.594 kb on - strand at 661.109 kb on + strand, within ompR at 661.110 kb on - strand, within ompR at 661.110 kb on - strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.156 kb on + strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR at 661.157 kb on - strand, within ompR
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.25 remove 660,096 + OKGIIK_02875 0.73 -1.6 660,236 + OKGIIK_02875 0.85 -0.8 660,236 + OKGIIK_02875 0.85 -0.3 660,236 + OKGIIK_02875 0.85 -0.8 660,236 + OKGIIK_02875 0.85 +2.0 660,236 + OKGIIK_02875 0.85 +0.3 660,236 + OKGIIK_02875 0.85 +0.7 660,236 + OKGIIK_02875 0.85 +0.1 660,237 - OKGIIK_02875 0.85 -1.4 660,237 - OKGIIK_02875 0.85 -0.3 660,237 - OKGIIK_02875 0.85 +0.3 660,237 - OKGIIK_02875 0.85 -1.3 660,237 - OKGIIK_02875 0.85 +3.3 660,501 + +0.8 660,525 + -1.8 660,594 - -1.6 660,594 - +0.3 661,109 + ompR OKGIIK_02885 0.47 +0.8 661,110 - ompR OKGIIK_02885 0.47 +1.3 661,110 - ompR OKGIIK_02885 0.47 -1.1 661,156 + ompR OKGIIK_02885 0.60 +0.8 661,156 + ompR OKGIIK_02885 0.60 -1.0 661,156 + ompR OKGIIK_02885 0.60 +0.6 661,156 + ompR OKGIIK_02885 0.60 +0.4 661,156 + ompR OKGIIK_02885 0.60 +1.0 661,156 + ompR OKGIIK_02885 0.60 +0.3 661,156 + ompR OKGIIK_02885 0.60 +2.3 661,156 + ompR OKGIIK_02885 0.60 -1.0 661,156 + ompR OKGIIK_02885 0.60 -0.6 661,156 + ompR OKGIIK_02885 0.60 +0.2 661,156 + ompR OKGIIK_02885 0.60 +0.8 661,156 + ompR OKGIIK_02885 0.60 +1.2 661,156 + ompR OKGIIK_02885 0.60 -2.3 661,156 + ompR OKGIIK_02885 0.60 +0.4 661,156 + ompR OKGIIK_02885 0.60 -0.6 661,156 + ompR OKGIIK_02885 0.60 -0.7 661,156 + ompR OKGIIK_02885 0.60 +1.6 661,156 + ompR OKGIIK_02885 0.60 +0.0 661,156 + ompR OKGIIK_02885 0.60 +0.3 661,156 + ompR OKGIIK_02885 0.60 +0.7 661,156 + ompR OKGIIK_02885 0.60 +1.1 661,156 + ompR OKGIIK_02885 0.60 +1.3 661,156 + ompR OKGIIK_02885 0.60 +1.0 661,156 + ompR OKGIIK_02885 0.60 -0.6 661,156 + ompR OKGIIK_02885 0.60 -1.0 661,156 + ompR OKGIIK_02885 0.60 +0.8 661,156 + ompR OKGIIK_02885 0.60 +0.4 661,156 + ompR OKGIIK_02885 0.60 -0.3 661,156 + ompR OKGIIK_02885 0.60 -0.2 661,156 + ompR OKGIIK_02885 0.60 -0.8 661,156 + ompR OKGIIK_02885 0.60 -1.3 661,157 - ompR OKGIIK_02885 0.60 +0.5 661,157 - ompR OKGIIK_02885 0.60 -0.3 661,157 - ompR OKGIIK_02885 0.60 +0.3 661,157 - ompR OKGIIK_02885 0.60 -0.1 661,157 - ompR OKGIIK_02885 0.60 +1.6 661,157 - ompR OKGIIK_02885 0.60 +1.4 661,157 - ompR OKGIIK_02885 0.60 +1.2 661,157 - ompR OKGIIK_02885 0.60 +0.2 661,157 - ompR OKGIIK_02885 0.60 -1.0 661,157 - ompR OKGIIK_02885 0.60 -0.1 661,157 - ompR OKGIIK_02885 0.60 -0.9 661,157 - ompR OKGIIK_02885 0.60 -1.3 661,157 - ompR OKGIIK_02885 0.60 +0.5 661,157 - ompR OKGIIK_02885 0.60 -1.1 661,157 - ompR OKGIIK_02885 0.60 -2.1 661,157 - ompR OKGIIK_02885 0.60 -1.4 661,157 - ompR OKGIIK_02885 0.60 +0.8 661,157 - ompR OKGIIK_02885 0.60 +0.1 661,157 - ompR OKGIIK_02885 0.60 +1.2 661,157 - ompR OKGIIK_02885 0.60 -0.4 661,157 - ompR OKGIIK_02885 0.60 +0.7 661,157 - ompR OKGIIK_02885 0.60 +2.0 661,157 - ompR OKGIIK_02885 0.60 +0.3 661,157 - ompR OKGIIK_02885 0.60 -0.3 661,157 - ompR OKGIIK_02885 0.60 -1.0 661,157 - ompR OKGIIK_02885 0.60 +0.3 661,157 - ompR OKGIIK_02885 0.60 -0.1 661,157 - ompR OKGIIK_02885 0.60 +0.0 661,157 - ompR OKGIIK_02885 0.60 +0.2 661,157 - ompR OKGIIK_02885 0.60 +2.0 661,157 - ompR OKGIIK_02885 0.60 +1.6 661,157 - ompR OKGIIK_02885 0.60 +1.0
Or see this region's nucleotide sequence