Experiment: R2A_PIPES pH 4.25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_02515 and OKGIIK_02520 are separated by 670 nucleotides OKGIIK_02520 and OKGIIK_02525 are separated by 635 nucleotides
OKGIIK_02515: OKGIIK_02515 - hypothetical protein, at 593,142 to 593,801
_02515
OKGIIK_02520: OKGIIK_02520 - hypothetical protein, at 594,472 to 594,669
_02520
OKGIIK_02525: OKGIIK_02525 - Putative transposase, at 595,305 to 596,099
_02525
Position (kb) 594
595 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 593.472 kb on + strand, within OKGIIK_02515 at 593.472 kb on + strand, within OKGIIK_02515 at 593.472 kb on + strand, within OKGIIK_02515 at 593.472 kb on + strand, within OKGIIK_02515 at 593.472 kb on + strand, within OKGIIK_02515 at 593.472 kb on + strand, within OKGIIK_02515 at 593.472 kb on + strand, within OKGIIK_02515 at 593.473 kb on - strand, within OKGIIK_02515 at 593.473 kb on - strand, within OKGIIK_02515 at 593.473 kb on - strand, within OKGIIK_02515 at 593.473 kb on - strand, within OKGIIK_02515 at 593.473 kb on - strand, within OKGIIK_02515 at 593.473 kb on - strand, within OKGIIK_02515 at 593.473 kb on - strand, within OKGIIK_02515 at 593.473 kb on - strand, within OKGIIK_02515 at 593.473 kb on - strand, within OKGIIK_02515 at 593.473 kb on - strand, within OKGIIK_02515 at 593.473 kb on - strand, within OKGIIK_02515 at 593.473 kb on - strand, within OKGIIK_02515 at 593.485 kb on + strand, within OKGIIK_02515 at 593.485 kb on + strand, within OKGIIK_02515 at 593.485 kb on + strand, within OKGIIK_02515 at 593.485 kb on + strand, within OKGIIK_02515 at 593.485 kb on + strand, within OKGIIK_02515 at 593.485 kb on + strand, within OKGIIK_02515 at 593.486 kb on - strand, within OKGIIK_02515 at 593.486 kb on - strand, within OKGIIK_02515 at 593.486 kb on - strand, within OKGIIK_02515 at 593.486 kb on - strand, within OKGIIK_02515 at 593.486 kb on - strand, within OKGIIK_02515 at 593.486 kb on - strand, within OKGIIK_02515 at 593.489 kb on - strand, within OKGIIK_02515 at 593.535 kb on - strand, within OKGIIK_02515 at 593.535 kb on - strand, within OKGIIK_02515 at 593.535 kb on - strand, within OKGIIK_02515 at 593.577 kb on + strand, within OKGIIK_02515 at 593.577 kb on + strand, within OKGIIK_02515 at 593.578 kb on - strand, within OKGIIK_02515 at 593.578 kb on - strand, within OKGIIK_02515 at 593.578 kb on - strand, within OKGIIK_02515 at 593.639 kb on + strand, within OKGIIK_02515 at 593.639 kb on + strand, within OKGIIK_02515 at 593.639 kb on + strand, within OKGIIK_02515 at 593.639 kb on + strand, within OKGIIK_02515 at 593.639 kb on + strand, within OKGIIK_02515 at 593.640 kb on - strand, within OKGIIK_02515 at 593.640 kb on - strand, within OKGIIK_02515 at 593.640 kb on - strand, within OKGIIK_02515 at 593.674 kb on + strand, within OKGIIK_02515 at 593.674 kb on + strand, within OKGIIK_02515 at 593.674 kb on + strand, within OKGIIK_02515 at 593.675 kb on - strand, within OKGIIK_02515 at 593.687 kb on + strand, within OKGIIK_02515 at 593.687 kb on + strand, within OKGIIK_02515 at 593.687 kb on + strand, within OKGIIK_02515 at 593.688 kb on - strand, within OKGIIK_02515 at 593.688 kb on - strand, within OKGIIK_02515 at 593.688 kb on - strand, within OKGIIK_02515 at 593.688 kb on - strand, within OKGIIK_02515 at 593.695 kb on + strand, within OKGIIK_02515 at 593.695 kb on + strand, within OKGIIK_02515 at 593.695 kb on + strand, within OKGIIK_02515 at 593.696 kb on - strand, within OKGIIK_02515 at 593.696 kb on - strand, within OKGIIK_02515 at 593.696 kb on - strand, within OKGIIK_02515 at 593.696 kb on - strand, within OKGIIK_02515 at 593.696 kb on - strand, within OKGIIK_02515 at 593.696 kb on - strand, within OKGIIK_02515 at 593.740 kb on + strand at 593.740 kb on + strand at 593.740 kb on + strand at 593.740 kb on + strand at 593.740 kb on + strand at 593.740 kb on + strand at 593.740 kb on + strand at 593.741 kb on - strand at 593.741 kb on - strand at 593.741 kb on - strand at 593.771 kb on + strand at 593.771 kb on + strand at 593.772 kb on - strand at 593.772 kb on - strand at 593.772 kb on - strand at 593.772 kb on - strand at 593.823 kb on - strand at 593.867 kb on + strand at 593.869 kb on + strand at 593.869 kb on + strand at 593.869 kb on + strand at 593.869 kb on + strand at 593.869 kb on + strand at 593.869 kb on + strand at 593.869 kb on + strand at 593.869 kb on + strand at 593.869 kb on + strand at 593.869 kb on + strand at 593.870 kb on - strand at 593.870 kb on - strand at 593.870 kb on - strand at 593.870 kb on - strand at 593.870 kb on - strand at 593.870 kb on - strand at 593.870 kb on - strand at 593.870 kb on - strand at 593.904 kb on + strand at 593.904 kb on + strand at 593.904 kb on + strand at 593.904 kb on + strand at 593.904 kb on + strand at 593.904 kb on + strand at 593.904 kb on + strand at 593.904 kb on + strand at 593.904 kb on + strand at 593.904 kb on + strand at 593.904 kb on + strand at 593.904 kb on + strand at 593.905 kb on - strand at 593.905 kb on - strand at 593.905 kb on - strand at 593.905 kb on - strand at 593.905 kb on - strand at 593.905 kb on - strand at 593.905 kb on - strand at 593.905 kb on - strand at 593.917 kb on - strand at 593.917 kb on - strand at 593.917 kb on - strand at 593.979 kb on + strand at 593.979 kb on + strand at 593.979 kb on + strand at 593.980 kb on - strand at 593.980 kb on - strand at 594.015 kb on + strand at 594.015 kb on + strand at 594.015 kb on + strand at 594.015 kb on + strand at 594.015 kb on + strand at 594.015 kb on + strand at 594.016 kb on - strand at 594.016 kb on - strand at 594.016 kb on - strand at 594.016 kb on - strand at 594.016 kb on - strand at 594.016 kb on - strand at 594.022 kb on + strand at 594.070 kb on + strand at 594.071 kb on - strand at 594.071 kb on - strand at 594.119 kb on + strand at 594.119 kb on + strand at 594.119 kb on + strand at 594.119 kb on + strand at 594.119 kb on + strand at 594.119 kb on + strand at 594.119 kb on + strand at 594.119 kb on + strand at 594.119 kb on + strand at 594.119 kb on + strand at 594.120 kb on - strand at 594.120 kb on - strand at 594.120 kb on - strand at 594.120 kb on - strand at 594.120 kb on - strand at 594.131 kb on + strand at 594.131 kb on + strand at 594.131 kb on + strand at 594.131 kb on + strand at 594.131 kb on + strand at 594.131 kb on + strand at 594.131 kb on + strand at 594.132 kb on - strand at 594.132 kb on - strand at 594.132 kb on - strand at 594.132 kb on - strand at 594.132 kb on - strand at 594.183 kb on + strand at 594.183 kb on + strand at 594.183 kb on + strand at 594.183 kb on + strand at 594.183 kb on + strand at 594.183 kb on + strand at 594.183 kb on + strand at 594.183 kb on + strand at 594.183 kb on + strand at 594.183 kb on + strand at 594.183 kb on + strand at 594.184 kb on - strand at 594.184 kb on - strand at 594.184 kb on - strand at 594.184 kb on - strand at 594.261 kb on + strand at 594.261 kb on + strand at 594.261 kb on + strand at 594.261 kb on + strand at 594.262 kb on - strand at 594.262 kb on - strand at 594.262 kb on - strand at 594.262 kb on - strand at 594.272 kb on - strand at 594.350 kb on - strand at 594.414 kb on + strand at 594.414 kb on + strand at 594.414 kb on + strand at 594.415 kb on - strand at 594.416 kb on - strand at 594.420 kb on + strand at 594.420 kb on + strand at 594.420 kb on + strand at 594.420 kb on + strand at 594.421 kb on - strand at 594.421 kb on - strand at 594.422 kb on + strand at 594.422 kb on + strand at 594.422 kb on + strand at 594.422 kb on + strand at 594.422 kb on + strand at 594.422 kb on + strand at 594.423 kb on - strand at 594.447 kb on + strand at 594.572 kb on - strand, within OKGIIK_02520 at 594.572 kb on - strand, within OKGIIK_02520 at 594.572 kb on - strand, within OKGIIK_02520 at 594.572 kb on - strand, within OKGIIK_02520 at 594.572 kb on - strand, within OKGIIK_02520 at 594.572 kb on - strand, within OKGIIK_02520 at 594.572 kb on - strand, within OKGIIK_02520 at 594.667 kb on + strand at 594.667 kb on + strand at 594.667 kb on + strand at 594.667 kb on + strand at 594.667 kb on + strand at 594.667 kb on + strand at 594.667 kb on + strand at 594.667 kb on + strand at 594.668 kb on - strand at 594.668 kb on - strand at 594.668 kb on - strand at 594.668 kb on - strand at 594.668 kb on - strand at 594.668 kb on - strand at 594.747 kb on + strand at 594.747 kb on + strand at 594.747 kb on + strand at 594.756 kb on + strand at 594.757 kb on - strand at 594.885 kb on + strand at 594.885 kb on + strand at 594.885 kb on + strand at 594.886 kb on - strand at 594.887 kb on + strand at 594.888 kb on - strand at 594.898 kb on + strand at 594.955 kb on + strand at 594.956 kb on - strand at 594.956 kb on - strand at 594.956 kb on - strand at 595.015 kb on + strand at 595.015 kb on + strand at 595.015 kb on + strand at 595.016 kb on - strand at 595.016 kb on - strand at 595.076 kb on - strand at 595.106 kb on + strand at 595.106 kb on + strand at 595.106 kb on + strand at 595.151 kb on + strand at 595.151 kb on + strand at 595.152 kb on - strand at 595.152 kb on - strand at 595.152 kb on - strand at 595.178 kb on + strand at 595.179 kb on - strand at 595.184 kb on - strand at 595.198 kb on + strand at 595.199 kb on - strand at 595.199 kb on - strand at 595.199 kb on - strand at 595.203 kb on - strand at 595.203 kb on - strand at 595.220 kb on + strand at 595.221 kb on - strand at 595.255 kb on + strand at 595.256 kb on - strand at 595.256 kb on - strand at 595.256 kb on - strand at 595.318 kb on + strand at 595.318 kb on + strand at 595.318 kb on + strand at 595.319 kb on - strand at 595.319 kb on - strand at 595.359 kb on + strand at 595.360 kb on - strand at 595.462 kb on + strand, within OKGIIK_02525 at 595.463 kb on - strand, within OKGIIK_02525 at 595.463 kb on - strand, within OKGIIK_02525 at 595.463 kb on - strand, within OKGIIK_02525 at 595.535 kb on - strand, within OKGIIK_02525 at 595.554 kb on - strand, within OKGIIK_02525
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.25 remove 593,472 + OKGIIK_02515 0.50 -1.0 593,472 + OKGIIK_02515 0.50 +0.8 593,472 + OKGIIK_02515 0.50 -0.6 593,472 + OKGIIK_02515 0.50 +0.6 593,472 + OKGIIK_02515 0.50 -0.0 593,472 + OKGIIK_02515 0.50 -1.3 593,472 + OKGIIK_02515 0.50 -2.0 593,473 - OKGIIK_02515 0.50 +0.0 593,473 - OKGIIK_02515 0.50 +0.6 593,473 - OKGIIK_02515 0.50 -1.1 593,473 - OKGIIK_02515 0.50 +1.2 593,473 - OKGIIK_02515 0.50 -1.1 593,473 - OKGIIK_02515 0.50 +0.6 593,473 - OKGIIK_02515 0.50 +0.1 593,473 - OKGIIK_02515 0.50 -0.3 593,473 - OKGIIK_02515 0.50 -1.0 593,473 - OKGIIK_02515 0.50 +0.6 593,473 - OKGIIK_02515 0.50 +0.2 593,473 - OKGIIK_02515 0.50 -0.0 593,485 + OKGIIK_02515 0.52 -0.3 593,485 + OKGIIK_02515 0.52 +0.4 593,485 + OKGIIK_02515 0.52 -1.3 593,485 + OKGIIK_02515 0.52 -1.3 593,485 + OKGIIK_02515 0.52 +0.4 593,485 + OKGIIK_02515 0.52 -0.3 593,486 - OKGIIK_02515 0.52 -1.2 593,486 - OKGIIK_02515 0.52 -0.8 593,486 - OKGIIK_02515 0.52 -0.1 593,486 - OKGIIK_02515 0.52 +0.4 593,486 - OKGIIK_02515 0.52 -0.0 593,486 - OKGIIK_02515 0.52 +0.2 593,489 - OKGIIK_02515 0.53 -1.6 593,535 - OKGIIK_02515 0.60 -0.5 593,535 - OKGIIK_02515 0.60 +1.7 593,535 - OKGIIK_02515 0.60 +1.1 593,577 + OKGIIK_02515 0.66 -0.8 593,577 + OKGIIK_02515 0.66 -0.6 593,578 - OKGIIK_02515 0.66 -0.4 593,578 - OKGIIK_02515 0.66 -1.4 593,578 - OKGIIK_02515 0.66 -2.2 593,639 + OKGIIK_02515 0.75 -2.3 593,639 + OKGIIK_02515 0.75 -0.6 593,639 + OKGIIK_02515 0.75 -0.3 593,639 + OKGIIK_02515 0.75 -0.3 593,639 + OKGIIK_02515 0.75 -1.8 593,640 - OKGIIK_02515 0.75 -0.0 593,640 - OKGIIK_02515 0.75 +0.6 593,640 - OKGIIK_02515 0.75 -0.3 593,674 + OKGIIK_02515 0.81 +0.7 593,674 + OKGIIK_02515 0.81 -0.3 593,674 + OKGIIK_02515 0.81 +0.2 593,675 - OKGIIK_02515 0.81 +1.2 593,687 + OKGIIK_02515 0.83 -0.2 593,687 + OKGIIK_02515 0.83 +1.0 593,687 + OKGIIK_02515 0.83 -0.5 593,688 - OKGIIK_02515 0.83 +0.6 593,688 - OKGIIK_02515 0.83 +0.4 593,688 - OKGIIK_02515 0.83 +0.3 593,688 - OKGIIK_02515 0.83 +0.2 593,695 + OKGIIK_02515 0.84 +0.7 593,695 + OKGIIK_02515 0.84 -0.7 593,695 + OKGIIK_02515 0.84 +3.0 593,696 - OKGIIK_02515 0.84 -0.1 593,696 - OKGIIK_02515 0.84 -0.2 593,696 - OKGIIK_02515 0.84 +0.3 593,696 - OKGIIK_02515 0.84 -0.0 593,696 - OKGIIK_02515 0.84 +0.7 593,696 - OKGIIK_02515 0.84 +0.3 593,740 + -2.9 593,740 + -1.5 593,740 + +0.6 593,740 + -0.5 593,740 + +2.0 593,740 + +1.0 593,740 + +0.2 593,741 - -1.6 593,741 - +0.4 593,741 - +1.2 593,771 + +0.1 593,771 + +0.1 593,772 - -1.8 593,772 - +1.2 593,772 - +1.3 593,772 - +0.7 593,823 - -0.1 593,867 + -0.7 593,869 + -0.6 593,869 + +0.1 593,869 + +0.7 593,869 + -0.6 593,869 + +0.4 593,869 + -1.3 593,869 + -1.3 593,869 + +0.5 593,869 + -0.0 593,869 + +0.4 593,870 - +0.3 593,870 - +1.0 593,870 - -1.2 593,870 - -0.1 593,870 - -1.3 593,870 - +0.4 593,870 - -0.7 593,870 - -0.0 593,904 + -0.4 593,904 + -1.0 593,904 + +0.1 593,904 + -0.8 593,904 + -0.6 593,904 + -3.0 593,904 + +0.2 593,904 + +1.0 593,904 + -0.2 593,904 + -0.8 593,904 + -2.0 593,904 + -0.0 593,905 - +0.2 593,905 - +0.1 593,905 - -1.2 593,905 - +0.7 593,905 - +0.6 593,905 - -0.6 593,905 - +0.2 593,905 - -1.2 593,917 - -1.6 593,917 - -0.6 593,917 - +1.0 593,979 + +2.3 593,979 + -0.3 593,979 + -0.8 593,980 - -0.0 593,980 - -0.0 594,015 + -0.3 594,015 + +0.3 594,015 + +1.0 594,015 + +0.8 594,015 + -0.3 594,015 + -0.4 594,016 - -0.0 594,016 - +2.6 594,016 - -0.2 594,016 - -0.2 594,016 - +0.2 594,016 - -2.3 594,022 + +1.4 594,070 + -1.6 594,071 - -0.2 594,071 - -2.6 594,119 + +0.3 594,119 + -0.4 594,119 + -0.5 594,119 + +0.2 594,119 + -0.9 594,119 + +0.3 594,119 + -1.6 594,119 + -0.8 594,119 + -1.6 594,119 + -0.6 594,120 - -0.2 594,120 - +0.3 594,120 - -0.8 594,120 - +1.0 594,120 - -0.3 594,131 + -1.0 594,131 + -0.1 594,131 + -2.0 594,131 + -0.0 594,131 + -1.3 594,131 + +1.2 594,131 + -0.6 594,132 - -0.6 594,132 - -0.3 594,132 - -0.4 594,132 - +0.3 594,132 - -0.6 594,183 + +0.3 594,183 + -0.6 594,183 + -0.7 594,183 + +0.2 594,183 + -1.9 594,183 + -0.3 594,183 + -0.3 594,183 + +0.4 594,183 + +1.0 594,183 + -0.6 594,183 + -2.3 594,184 - +2.6 594,184 - -1.3 594,184 - +0.5 594,184 - -0.2 594,261 + +0.4 594,261 + +0.4 594,261 + -0.8 594,261 + -2.2 594,262 - -0.2 594,262 - -0.0 594,262 - -1.0 594,262 - -0.1 594,272 - +0.7 594,350 - -1.3 594,414 + -0.4 594,414 + +0.7 594,414 + -0.1 594,415 - -2.5 594,416 - -0.2 594,420 + +0.4 594,420 + +1.0 594,420 + -1.0 594,420 + +0.2 594,421 - -2.5 594,421 - -0.2 594,422 + +0.2 594,422 + +0.3 594,422 + -1.0 594,422 + +0.6 594,422 + -0.3 594,422 + -0.7 594,423 - -0.2 594,447 + -1.6 594,572 - OKGIIK_02520 0.51 -1.4 594,572 - OKGIIK_02520 0.51 -0.8 594,572 - OKGIIK_02520 0.51 +0.7 594,572 - OKGIIK_02520 0.51 -1.3 594,572 - OKGIIK_02520 0.51 +0.6 594,572 - OKGIIK_02520 0.51 +2.0 594,572 - OKGIIK_02520 0.51 +0.2 594,667 + +1.0 594,667 + -0.6 594,667 + -0.9 594,667 + -0.6 594,667 + +0.4 594,667 + +0.3 594,667 + -2.3 594,667 + -0.8 594,668 - -0.0 594,668 - -1.3 594,668 - -1.0 594,668 - +0.4 594,668 - -0.9 594,668 - +0.1 594,747 + +1.2 594,747 + +0.4 594,747 + +1.0 594,756 + -0.0 594,757 - -0.2 594,885 + -1.0 594,885 + -0.8 594,885 + +0.9 594,886 - -1.8 594,887 + +0.7 594,888 - -0.3 594,898 + -0.4 594,955 + +1.6 594,956 - -0.0 594,956 - -0.3 594,956 - +0.2 595,015 + -1.0 595,015 + -0.7 595,015 + -0.9 595,016 - -0.6 595,016 - -1.6 595,076 - -1.9 595,106 + -0.6 595,106 + -0.0 595,106 + -0.3 595,151 + +0.8 595,151 + -0.6 595,152 - -0.8 595,152 - -0.1 595,152 - +0.4 595,178 + +0.3 595,179 - -0.0 595,184 - -1.0 595,198 + +1.2 595,199 - -0.6 595,199 - +0.4 595,199 - +1.0 595,203 - +0.7 595,203 - -1.3 595,220 + +0.3 595,221 - -0.0 595,255 + +1.0 595,256 - -0.5 595,256 - -0.6 595,256 - -1.8 595,318 + -0.0 595,318 + -1.3 595,318 + -1.2 595,319 - -1.9 595,319 - +0.5 595,359 + +0.2 595,360 - -1.5 595,462 + OKGIIK_02525 0.20 +0.6 595,463 - OKGIIK_02525 0.20 -0.3 595,463 - OKGIIK_02525 0.20 +1.2 595,463 - OKGIIK_02525 0.20 -0.1 595,535 - OKGIIK_02525 0.29 +0.8 595,554 - OKGIIK_02525 0.31 -0.0
Or see this region's nucleotide sequence