Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_02325

Experiment: R2A_PIPES pH 4.25

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_02320 and OKGIIK_02325 are separated by 56 nucleotidesOKGIIK_02325 and hda overlap by 4 nucleotideshda and suhB are separated by 52 nucleotides OKGIIK_02320: OKGIIK_02320 - DUF2066 domain-containing protein, at 539,670 to 540,650 _02320 OKGIIK_02325: OKGIIK_02325 - AI-2E family transporter, at 540,707 to 541,888 _02325 OKGIIK_02330: hda - DnaA regulatory inactivator Hda, at 541,885 to 542,583 hda OKGIIK_02335: suhB - inositol monophosphatase, at 542,636 to 543,439 suhB Position (kb) 540 541 542Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 539.757 kb on + strandat 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.876 kb on - strand, within OKGIIK_02320at 539.876 kb on - strand, within OKGIIK_02320at 539.876 kb on - strand, within OKGIIK_02320at 539.876 kb on - strand, within OKGIIK_02320at 539.876 kb on - strand, within OKGIIK_02320at 539.876 kb on - strand, within OKGIIK_02320at 539.876 kb on - strand, within OKGIIK_02320at 539.876 kb on - strand, within OKGIIK_02320at 539.876 kb on - strand, within OKGIIK_02320at 539.876 kb on - strand, within OKGIIK_02320at 539.876 kb on - strand, within OKGIIK_02320at 539.876 kb on - strand, within OKGIIK_02320at 539.876 kb on - strand, within OKGIIK_02320at 539.876 kb on - strand, within OKGIIK_02320at 539.876 kb on - strand, within OKGIIK_02320at 539.876 kb on - strand, within OKGIIK_02320at 539.876 kb on - strand, within OKGIIK_02320at 539.880 kb on + strand, within OKGIIK_02320at 539.880 kb on + strand, within OKGIIK_02320at 539.880 kb on + strand, within OKGIIK_02320at 539.880 kb on + strand, within OKGIIK_02320at 539.880 kb on + strand, within OKGIIK_02320at 539.881 kb on - strand, within OKGIIK_02320at 539.881 kb on - strand, within OKGIIK_02320at 539.881 kb on - strand, within OKGIIK_02320at 539.928 kb on + strand, within OKGIIK_02320at 539.953 kb on + strand, within OKGIIK_02320at 539.953 kb on + strand, within OKGIIK_02320at 540.216 kb on + strand, within OKGIIK_02320at 540.216 kb on + strand, within OKGIIK_02320at 540.217 kb on - strand, within OKGIIK_02320at 540.217 kb on - strand, within OKGIIK_02320at 540.444 kb on + strand, within OKGIIK_02320at 540.444 kb on + strand, within OKGIIK_02320at 540.444 kb on + strand, within OKGIIK_02320at 540.445 kb on - strand, within OKGIIK_02320at 540.445 kb on - strand, within OKGIIK_02320at 540.445 kb on - strand, within OKGIIK_02320at 540.445 kb on - strand, within OKGIIK_02320at 540.445 kb on - strand, within OKGIIK_02320at 540.493 kb on + strand, within OKGIIK_02320at 540.493 kb on + strand, within OKGIIK_02320at 540.493 kb on + strand, within OKGIIK_02320at 540.493 kb on + strand, within OKGIIK_02320at 540.493 kb on + strand, within OKGIIK_02320at 540.493 kb on + strand, within OKGIIK_02320at 540.493 kb on + strand, within OKGIIK_02320at 540.493 kb on + strand, within OKGIIK_02320at 540.493 kb on + strand, within OKGIIK_02320at 540.493 kb on + strand, within OKGIIK_02320at 540.493 kb on + strand, within OKGIIK_02320at 540.493 kb on + strand, within OKGIIK_02320at 540.493 kb on + strand, within OKGIIK_02320at 540.493 kb on + strand, within OKGIIK_02320at 540.494 kb on - strand, within OKGIIK_02320at 540.494 kb on - strand, within OKGIIK_02320at 540.494 kb on - strand, within OKGIIK_02320at 540.494 kb on - strand, within OKGIIK_02320at 540.494 kb on - strand, within OKGIIK_02320at 540.494 kb on - strand, within OKGIIK_02320at 540.494 kb on - strand, within OKGIIK_02320at 540.494 kb on - strand, within OKGIIK_02320at 540.494 kb on - strand, within OKGIIK_02320at 540.494 kb on - strand, within OKGIIK_02320at 540.494 kb on - strand, within OKGIIK_02320at 540.494 kb on - strand, within OKGIIK_02320at 540.494 kb on - strand, within OKGIIK_02320at 540.737 kb on + strandat 540.737 kb on + strandat 540.737 kb on + strandat 540.737 kb on + strandat 540.737 kb on + strandat 540.737 kb on + strandat 540.737 kb on + strandat 540.737 kb on + strandat 540.737 kb on + strandat 540.806 kb on + strandat 540.866 kb on + strand, within OKGIIK_02325at 540.866 kb on + strand, within OKGIIK_02325at 541.253 kb on + strand, within OKGIIK_02325at 541.253 kb on + strand, within OKGIIK_02325at 541.253 kb on + strand, within OKGIIK_02325at 541.253 kb on + strand, within OKGIIK_02325at 541.253 kb on + strand, within OKGIIK_02325at 541.253 kb on + strand, within OKGIIK_02325at 541.331 kb on + strand, within OKGIIK_02325at 541.331 kb on + strand, within OKGIIK_02325at 541.412 kb on + strand, within OKGIIK_02325at 541.412 kb on + strand, within OKGIIK_02325at 541.412 kb on + strand, within OKGIIK_02325at 541.412 kb on + strand, within OKGIIK_02325at 541.412 kb on + strand, within OKGIIK_02325at 541.412 kb on + strand, within OKGIIK_02325at 541.412 kb on + strand, within OKGIIK_02325at 541.412 kb on + strand, within OKGIIK_02325at 541.412 kb on + strand, within OKGIIK_02325at 541.412 kb on + strand, within OKGIIK_02325at 541.412 kb on + strand, within OKGIIK_02325at 541.493 kb on + strand, within OKGIIK_02325at 541.613 kb on + strand, within OKGIIK_02325at 541.613 kb on + strand, within OKGIIK_02325at 541.613 kb on + strand, within OKGIIK_02325at 541.613 kb on + strand, within OKGIIK_02325at 541.613 kb on + strand, within OKGIIK_02325at 541.613 kb on + strand, within OKGIIK_02325at 541.694 kb on + strand, within OKGIIK_02325at 541.763 kb on + strand, within OKGIIK_02325at 541.763 kb on + strand, within OKGIIK_02325at 541.763 kb on + strand, within OKGIIK_02325at 541.763 kb on + strand, within OKGIIK_02325at 541.763 kb on + strand, within OKGIIK_02325at 541.796 kb on + strandat 541.796 kb on + strandat 541.796 kb on + strandat 541.796 kb on + strandat 541.796 kb on + strandat 541.796 kb on + strandat 541.796 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.25
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539,757 + +0.1
539,875 + OKGIIK_02320 0.21 +1.0
539,875 + OKGIIK_02320 0.21 +1.0
539,875 + OKGIIK_02320 0.21 -0.7
539,875 + OKGIIK_02320 0.21 +0.7
539,875 + OKGIIK_02320 0.21 -0.2
539,875 + OKGIIK_02320 0.21 +1.0
539,875 + OKGIIK_02320 0.21 -0.6
539,875 + OKGIIK_02320 0.21 -1.0
539,875 + OKGIIK_02320 0.21 +2.0
539,875 + OKGIIK_02320 0.21 +0.5
539,875 + OKGIIK_02320 0.21 -2.0
539,875 + OKGIIK_02320 0.21 +0.1
539,875 + OKGIIK_02320 0.21 -1.9
539,875 + OKGIIK_02320 0.21 -1.0
539,875 + OKGIIK_02320 0.21 -1.9
539,875 + OKGIIK_02320 0.21 -0.6
539,875 + OKGIIK_02320 0.21 +1.0
539,875 + OKGIIK_02320 0.21 -1.0
539,875 + OKGIIK_02320 0.21 -0.1
539,875 + OKGIIK_02320 0.21 -0.4
539,875 + OKGIIK_02320 0.21 -0.1
539,875 + OKGIIK_02320 0.21 -0.6
539,875 + OKGIIK_02320 0.21 -0.8
539,875 + OKGIIK_02320 0.21 -2.2
539,876 - OKGIIK_02320 0.21 -0.6
539,876 - OKGIIK_02320 0.21 +0.8
539,876 - OKGIIK_02320 0.21 +1.0
539,876 - OKGIIK_02320 0.21 -0.8
539,876 - OKGIIK_02320 0.21 -0.3
539,876 - OKGIIK_02320 0.21 +1.0
539,876 - OKGIIK_02320 0.21 +0.2
539,876 - OKGIIK_02320 0.21 +1.5
539,876 - OKGIIK_02320 0.21 +0.3
539,876 - OKGIIK_02320 0.21 -0.8
539,876 - OKGIIK_02320 0.21 +0.2
539,876 - OKGIIK_02320 0.21 -0.0
539,876 - OKGIIK_02320 0.21 -1.2
539,876 - OKGIIK_02320 0.21 -1.9
539,876 - OKGIIK_02320 0.21 +0.4
539,876 - OKGIIK_02320 0.21 +0.2
539,876 - OKGIIK_02320 0.21 +0.4
539,880 + OKGIIK_02320 0.21 +0.7
539,880 + OKGIIK_02320 0.21 +0.1
539,880 + OKGIIK_02320 0.21 +2.2
539,880 + OKGIIK_02320 0.21 +0.2
539,880 + OKGIIK_02320 0.21 -0.0
539,881 - OKGIIK_02320 0.22 -2.0
539,881 - OKGIIK_02320 0.22 -1.8
539,881 - OKGIIK_02320 0.22 -0.6
539,928 + OKGIIK_02320 0.26 +0.4
539,953 + OKGIIK_02320 0.29 +0.6
539,953 + OKGIIK_02320 0.29 -0.3
540,216 + OKGIIK_02320 0.56 +0.2
540,216 + OKGIIK_02320 0.56 -1.0
540,217 - OKGIIK_02320 0.56 +1.3
540,217 - OKGIIK_02320 0.56 -0.7
540,444 + OKGIIK_02320 0.79 -0.2
540,444 + OKGIIK_02320 0.79 -1.8
540,444 + OKGIIK_02320 0.79 -0.9
540,445 - OKGIIK_02320 0.79 -0.0
540,445 - OKGIIK_02320 0.79 -1.8
540,445 - OKGIIK_02320 0.79 -2.4
540,445 - OKGIIK_02320 0.79 +0.4
540,445 - OKGIIK_02320 0.79 +0.5
540,493 + OKGIIK_02320 0.84 -0.0
540,493 + OKGIIK_02320 0.84 -0.8
540,493 + OKGIIK_02320 0.84 +0.7
540,493 + OKGIIK_02320 0.84 +1.0
540,493 + OKGIIK_02320 0.84 -0.7
540,493 + OKGIIK_02320 0.84 +1.8
540,493 + OKGIIK_02320 0.84 -0.0
540,493 + OKGIIK_02320 0.84 +0.1
540,493 + OKGIIK_02320 0.84 +0.5
540,493 + OKGIIK_02320 0.84 -0.0
540,493 + OKGIIK_02320 0.84 +0.7
540,493 + OKGIIK_02320 0.84 +2.5
540,493 + OKGIIK_02320 0.84 -2.5
540,493 + OKGIIK_02320 0.84 -0.8
540,494 - OKGIIK_02320 0.84 +1.3
540,494 - OKGIIK_02320 0.84 +1.5
540,494 - OKGIIK_02320 0.84 -0.4
540,494 - OKGIIK_02320 0.84 -0.2
540,494 - OKGIIK_02320 0.84 -1.6
540,494 - OKGIIK_02320 0.84 -0.0
540,494 - OKGIIK_02320 0.84 -1.4
540,494 - OKGIIK_02320 0.84 -0.7
540,494 - OKGIIK_02320 0.84 -0.6
540,494 - OKGIIK_02320 0.84 +1.0
540,494 - OKGIIK_02320 0.84 -0.4
540,494 - OKGIIK_02320 0.84 -2.2
540,494 - OKGIIK_02320 0.84 -0.4
540,737 + -0.0
540,737 + +1.5
540,737 + -1.4
540,737 + -0.6
540,737 + -1.6
540,737 + -1.4
540,737 + -0.0
540,737 + -1.4
540,737 + -2.0
540,806 + -0.0
540,866 + OKGIIK_02325 0.13 +0.8
540,866 + OKGIIK_02325 0.13 +1.0
541,253 + OKGIIK_02325 0.46 +0.5
541,253 + OKGIIK_02325 0.46 -0.3
541,253 + OKGIIK_02325 0.46 -1.4
541,253 + OKGIIK_02325 0.46 -0.0
541,253 + OKGIIK_02325 0.46 +0.5
541,253 + OKGIIK_02325 0.46 +0.1
541,331 + OKGIIK_02325 0.53 +0.2
541,331 + OKGIIK_02325 0.53 +1.4
541,412 + OKGIIK_02325 0.60 +1.3
541,412 + OKGIIK_02325 0.60 +0.5
541,412 + OKGIIK_02325 0.60 -2.5
541,412 + OKGIIK_02325 0.60 -1.9
541,412 + OKGIIK_02325 0.60 -1.4
541,412 + OKGIIK_02325 0.60 +0.6
541,412 + OKGIIK_02325 0.60 -0.4
541,412 + OKGIIK_02325 0.60 -0.5
541,412 + OKGIIK_02325 0.60 +0.7
541,412 + OKGIIK_02325 0.60 +1.4
541,412 + OKGIIK_02325 0.60 +0.3
541,493 + OKGIIK_02325 0.66 -1.6
541,613 + OKGIIK_02325 0.77 -2.0
541,613 + OKGIIK_02325 0.77 -1.4
541,613 + OKGIIK_02325 0.77 -0.8
541,613 + OKGIIK_02325 0.77 +0.4
541,613 + OKGIIK_02325 0.77 -3.2
541,613 + OKGIIK_02325 0.77 -0.3
541,694 + OKGIIK_02325 0.84 +0.4
541,763 + OKGIIK_02325 0.89 +1.7
541,763 + OKGIIK_02325 0.89 +1.0
541,763 + OKGIIK_02325 0.89 +1.0
541,763 + OKGIIK_02325 0.89 +0.5
541,763 + OKGIIK_02325 0.89 +0.4
541,796 + -2.0
541,796 + +0.1
541,796 + +0.4
541,796 + +0.5
541,796 + -1.9
541,796 + -1.4
541,796 + +0.5

Or see this region's nucleotide sequence