Experiment: R2A_PIPES pH 4.25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt relA and OKGIIK_02175 are separated by 86 nucleotides OKGIIK_02175 and wcaG are separated by 7 nucleotides
OKGIIK_02170: relA - GTP diphosphokinase, at 508,374 to 510,515
relA
OKGIIK_02175: OKGIIK_02175 - hypothetical protein, at 510,602 to 512,281
_02175
OKGIIK_02180: wcaG - Nucleoside-diphosphate-sugar epimerase, at 512,289 to 513,128
wcaG
Position (kb) 510
511
512
513 Strain fitness (log2 ratio) -2
-1
0
1 at 509.745 kb on + strand, within relA at 509.745 kb on + strand, within relA at 509.745 kb on + strand, within relA at 509.745 kb on + strand, within relA at 509.745 kb on + strand, within relA at 509.745 kb on + strand, within relA at 509.746 kb on - strand, within relA at 509.746 kb on - strand, within relA at 509.746 kb on - strand, within relA at 509.746 kb on - strand, within relA at 510.273 kb on + strand, within relA at 510.274 kb on - strand, within relA at 510.274 kb on - strand, within relA at 510.301 kb on - strand at 510.301 kb on - strand at 510.301 kb on - strand at 510.568 kb on + strand at 510.568 kb on + strand at 510.568 kb on + strand at 510.568 kb on + strand at 510.568 kb on + strand at 510.568 kb on + strand at 510.568 kb on + strand at 510.568 kb on + strand at 510.568 kb on + strand at 510.568 kb on + strand at 510.568 kb on + strand at 510.568 kb on + strand at 510.568 kb on + strand at 510.568 kb on + strand at 510.568 kb on + strand at 510.569 kb on - strand at 510.569 kb on - strand at 510.569 kb on - strand at 510.569 kb on - strand at 510.569 kb on - strand at 510.569 kb on - strand at 510.569 kb on - strand at 510.569 kb on - strand at 510.569 kb on - strand at 510.569 kb on - strand at 510.569 kb on - strand at 510.569 kb on - strand at 510.569 kb on - strand at 510.569 kb on - strand at 510.569 kb on - strand at 510.569 kb on - strand at 511.210 kb on - strand, within OKGIIK_02175 at 511.210 kb on - strand, within OKGIIK_02175 at 511.259 kb on + strand, within OKGIIK_02175 at 511.259 kb on + strand, within OKGIIK_02175 at 511.259 kb on + strand, within OKGIIK_02175 at 511.259 kb on + strand, within OKGIIK_02175 at 511.259 kb on + strand, within OKGIIK_02175 at 511.259 kb on + strand, within OKGIIK_02175 at 511.259 kb on + strand, within OKGIIK_02175 at 511.259 kb on + strand, within OKGIIK_02175 at 511.260 kb on - strand, within OKGIIK_02175 at 511.931 kb on + strand, within OKGIIK_02175 at 511.931 kb on + strand, within OKGIIK_02175 at 511.931 kb on + strand, within OKGIIK_02175 at 511.931 kb on + strand, within OKGIIK_02175 at 511.932 kb on - strand, within OKGIIK_02175 at 511.932 kb on - strand, within OKGIIK_02175 at 511.941 kb on - strand, within OKGIIK_02175 at 511.941 kb on - strand, within OKGIIK_02175 at 511.941 kb on - strand, within OKGIIK_02175 at 512.700 kb on + strand, within wcaG at 512.700 kb on + strand, within wcaG at 513.126 kb on + strand at 513.126 kb on + strand at 513.127 kb on - strand at 513.127 kb on - strand at 513.166 kb on + strand at 513.166 kb on + strand at 513.166 kb on + strand at 513.166 kb on + strand at 513.167 kb on - strand at 513.167 kb on - strand at 513.167 kb on - strand at 513.167 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.25 remove 509,745 + relA OKGIIK_02170 0.64 +1.0 509,745 + relA OKGIIK_02170 0.64 -2.3 509,745 + relA OKGIIK_02170 0.64 -0.8 509,745 + relA OKGIIK_02170 0.64 -1.6 509,745 + relA OKGIIK_02170 0.64 -1.4 509,745 + relA OKGIIK_02170 0.64 +0.7 509,746 - relA OKGIIK_02170 0.64 -0.2 509,746 - relA OKGIIK_02170 0.64 -0.8 509,746 - relA OKGIIK_02170 0.64 +0.2 509,746 - relA OKGIIK_02170 0.64 +0.1 510,273 + relA OKGIIK_02170 0.89 -0.7 510,274 - relA OKGIIK_02170 0.89 +1.2 510,274 - relA OKGIIK_02170 0.89 -2.1 510,301 - +0.7 510,301 - -0.6 510,301 - +0.4 510,568 + +0.2 510,568 + -0.8 510,568 + +0.2 510,568 + -1.8 510,568 + -0.2 510,568 + +0.2 510,568 + -0.6 510,568 + -0.6 510,568 + -1.0 510,568 + +0.7 510,568 + -0.3 510,568 + +1.0 510,568 + -1.2 510,568 + +0.1 510,568 + +0.3 510,569 - +1.3 510,569 - -0.9 510,569 - +0.6 510,569 - -0.3 510,569 - +1.3 510,569 - -0.6 510,569 - -0.0 510,569 - +0.5 510,569 - -0.6 510,569 - +0.2 510,569 - +1.2 510,569 - +1.3 510,569 - -0.9 510,569 - +0.8 510,569 - +0.5 510,569 - -0.2 511,210 - OKGIIK_02175 0.36 -0.3 511,210 - OKGIIK_02175 0.36 -1.6 511,259 + OKGIIK_02175 0.39 +0.6 511,259 + OKGIIK_02175 0.39 -0.3 511,259 + OKGIIK_02175 0.39 -0.6 511,259 + OKGIIK_02175 0.39 -0.8 511,259 + OKGIIK_02175 0.39 -0.3 511,259 + OKGIIK_02175 0.39 +0.3 511,259 + OKGIIK_02175 0.39 +1.6 511,259 + OKGIIK_02175 0.39 +1.3 511,260 - OKGIIK_02175 0.39 -0.6 511,931 + OKGIIK_02175 0.79 -0.0 511,931 + OKGIIK_02175 0.79 +0.5 511,931 + OKGIIK_02175 0.79 +0.5 511,931 + OKGIIK_02175 0.79 -0.0 511,932 - OKGIIK_02175 0.79 -0.6 511,932 - OKGIIK_02175 0.79 +1.0 511,941 - OKGIIK_02175 0.80 -0.3 511,941 - OKGIIK_02175 0.80 +0.7 511,941 - OKGIIK_02175 0.80 -0.3 512,700 + wcaG OKGIIK_02180 0.49 +0.2 512,700 + wcaG OKGIIK_02180 0.49 -0.9 513,126 + -0.5 513,126 + +0.2 513,127 - -0.3 513,127 - -0.3 513,166 + -1.0 513,166 + -1.0 513,166 + -0.0 513,166 + -0.6 513,167 - -0.2 513,167 - +0.2 513,167 - -2.7 513,167 - -0.0
Or see this region's nucleotide sequence