Experiment: R2A_PIPES pH 4.25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tolB and pal are separated by 250 nucleotides pal and ybgF are separated by 41 nucleotides ybgF and OKGIIK_01890 are separated by 11 nucleotides OKGIIK_01890 and queC are separated by 204 nucleotides
OKGIIK_01875: tolB - Tol-Pal system beta propeller repeat protein TolB, at 433,205 to 434,536
tolB
OKGIIK_01880: pal - peptidoglycan-associated lipoprotein Pal, at 434,787 to 435,293
pal
OKGIIK_01885: ybgF - tol-pal system protein YbgF, at 435,335 to 436,156
ybgF
OKGIIK_01890: OKGIIK_01890 - 7-carboxy-7-deazaguanine synthase, at 436,168 to 436,860
_01890
OKGIIK_01895: queC - 7-cyano-7-deazaguanine synthase QueC, at 437,065 to 437,751
queC
Position (kb) 435
436
437 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 434.703 kb on + strand at 435.291 kb on + strand at 435.292 kb on - strand at 435.575 kb on + strand, within ybgF at 435.576 kb on - strand, within ybgF at 435.576 kb on - strand, within ybgF at 435.576 kb on - strand, within ybgF at 435.576 kb on - strand, within ybgF at 435.576 kb on - strand, within ybgF at 435.576 kb on - strand, within ybgF at 435.576 kb on - strand, within ybgF at 435.576 kb on - strand, within ybgF at 435.576 kb on - strand, within ybgF at 435.576 kb on - strand, within ybgF at 435.576 kb on - strand, within ybgF at 435.576 kb on - strand, within ybgF at 435.785 kb on + strand, within ybgF at 435.785 kb on + strand, within ybgF at 435.785 kb on + strand, within ybgF at 435.785 kb on + strand, within ybgF at 435.785 kb on + strand, within ybgF at 435.785 kb on + strand, within ybgF at 435.785 kb on + strand, within ybgF at 435.785 kb on + strand, within ybgF at 435.785 kb on + strand, within ybgF at 435.786 kb on - strand, within ybgF at 435.821 kb on + strand, within ybgF at 435.821 kb on + strand, within ybgF at 435.821 kb on + strand, within ybgF at 435.821 kb on + strand, within ybgF at 435.821 kb on + strand, within ybgF at 435.821 kb on + strand, within ybgF at 435.821 kb on + strand, within ybgF at 435.821 kb on + strand, within ybgF at 435.821 kb on + strand, within ybgF at 435.821 kb on + strand, within ybgF at 435.821 kb on + strand, within ybgF at 435.821 kb on + strand, within ybgF at 435.821 kb on + strand, within ybgF at 435.821 kb on + strand, within ybgF at 435.821 kb on + strand, within ybgF at 435.821 kb on + strand, within ybgF at 435.821 kb on + strand, within ybgF at 435.821 kb on + strand, within ybgF at 435.821 kb on + strand, within ybgF at 435.821 kb on + strand, within ybgF at 435.822 kb on - strand, within ybgF at 435.822 kb on - strand, within ybgF at 435.822 kb on - strand, within ybgF at 435.822 kb on - strand, within ybgF at 435.822 kb on - strand, within ybgF at 435.822 kb on - strand, within ybgF at 435.822 kb on - strand, within ybgF at 435.863 kb on + strand, within ybgF at 435.896 kb on + strand, within ybgF at 435.896 kb on + strand, within ybgF at 435.896 kb on + strand, within ybgF at 435.896 kb on + strand, within ybgF at 435.896 kb on + strand, within ybgF at 435.896 kb on + strand, within ybgF at 435.896 kb on + strand, within ybgF at 435.896 kb on + strand, within ybgF at 435.896 kb on + strand, within ybgF at 435.896 kb on + strand, within ybgF at 435.896 kb on + strand, within ybgF at 435.896 kb on + strand, within ybgF at 435.896 kb on + strand, within ybgF at 435.896 kb on + strand, within ybgF at 435.896 kb on + strand, within ybgF at 435.896 kb on + strand, within ybgF at 435.896 kb on + strand, within ybgF at 435.896 kb on + strand, within ybgF at 435.896 kb on + strand, within ybgF at 435.897 kb on - strand, within ybgF at 435.897 kb on - strand, within ybgF at 435.897 kb on - strand, within ybgF at 435.897 kb on - strand, within ybgF at 435.897 kb on - strand, within ybgF at 435.897 kb on - strand, within ybgF at 435.897 kb on - strand, within ybgF at 435.897 kb on - strand, within ybgF at 435.897 kb on - strand, within ybgF at 435.914 kb on + strand, within ybgF at 435.914 kb on + strand, within ybgF at 435.914 kb on + strand, within ybgF at 435.914 kb on + strand, within ybgF at 435.914 kb on + strand, within ybgF at 435.914 kb on + strand, within ybgF at 435.914 kb on + strand, within ybgF at 435.914 kb on + strand, within ybgF at 435.914 kb on + strand, within ybgF at 435.915 kb on - strand, within ybgF at 435.915 kb on - strand, within ybgF at 435.915 kb on - strand, within ybgF at 435.915 kb on - strand, within ybgF at 435.915 kb on - strand, within ybgF at 435.915 kb on - strand, within ybgF at 435.915 kb on - strand, within ybgF at 435.917 kb on + strand, within ybgF at 435.917 kb on + strand, within ybgF at 435.917 kb on + strand, within ybgF at 435.917 kb on + strand, within ybgF at 435.917 kb on + strand, within ybgF at 435.917 kb on + strand, within ybgF at 435.917 kb on + strand, within ybgF at 435.917 kb on + strand, within ybgF at 435.917 kb on + strand, within ybgF at 435.917 kb on + strand, within ybgF at 435.917 kb on + strand, within ybgF at 435.917 kb on + strand, within ybgF at 435.917 kb on + strand, within ybgF at 435.917 kb on + strand, within ybgF at 435.917 kb on + strand, within ybgF at 435.918 kb on - strand, within ybgF at 435.918 kb on - strand, within ybgF at 435.918 kb on - strand, within ybgF at 435.918 kb on - strand, within ybgF at 435.918 kb on - strand, within ybgF at 435.918 kb on - strand, within ybgF at 435.918 kb on - strand, within ybgF at 435.918 kb on - strand, within ybgF at 435.918 kb on - strand, within ybgF at 435.918 kb on - strand, within ybgF at 435.918 kb on - strand, within ybgF at 435.918 kb on - strand, within ybgF at 435.932 kb on + strand, within ybgF at 435.932 kb on + strand, within ybgF at 435.932 kb on + strand, within ybgF at 435.932 kb on + strand, within ybgF at 435.933 kb on - strand, within ybgF at 435.933 kb on - strand, within ybgF at 436.019 kb on + strand, within ybgF at 436.020 kb on - strand, within ybgF at 436.085 kb on + strand at 436.085 kb on + strand at 436.085 kb on + strand at 436.085 kb on + strand at 436.085 kb on + strand at 436.085 kb on + strand at 436.085 kb on + strand at 436.085 kb on + strand at 436.085 kb on + strand at 436.085 kb on + strand at 436.086 kb on - strand at 436.086 kb on - strand at 436.086 kb on - strand at 436.086 kb on - strand at 436.086 kb on - strand at 436.345 kb on + strand, within OKGIIK_01890 at 436.354 kb on + strand, within OKGIIK_01890 at 436.405 kb on + strand, within OKGIIK_01890 at 436.405 kb on + strand, within OKGIIK_01890 at 436.405 kb on + strand, within OKGIIK_01890 at 436.405 kb on + strand, within OKGIIK_01890 at 436.405 kb on + strand, within OKGIIK_01890 at 436.405 kb on + strand, within OKGIIK_01890 at 436.405 kb on + strand, within OKGIIK_01890 at 436.405 kb on + strand, within OKGIIK_01890 at 436.405 kb on + strand, within OKGIIK_01890 at 436.405 kb on + strand, within OKGIIK_01890 at 436.405 kb on + strand, within OKGIIK_01890 at 436.405 kb on + strand, within OKGIIK_01890 at 436.405 kb on + strand, within OKGIIK_01890 at 436.405 kb on + strand, within OKGIIK_01890 at 436.405 kb on + strand, within OKGIIK_01890 at 436.405 kb on + strand, within OKGIIK_01890 at 436.405 kb on + strand, within OKGIIK_01890 at 436.405 kb on + strand, within OKGIIK_01890 at 436.405 kb on + strand, within OKGIIK_01890 at 436.405 kb on + strand, within OKGIIK_01890 at 436.406 kb on - strand, within OKGIIK_01890 at 436.406 kb on - strand, within OKGIIK_01890 at 436.406 kb on - strand, within OKGIIK_01890 at 436.406 kb on - strand, within OKGIIK_01890 at 436.406 kb on - strand, within OKGIIK_01890 at 436.406 kb on - strand, within OKGIIK_01890 at 436.406 kb on - strand, within OKGIIK_01890 at 436.406 kb on - strand, within OKGIIK_01890 at 436.406 kb on - strand, within OKGIIK_01890 at 436.406 kb on - strand, within OKGIIK_01890 at 436.406 kb on - strand, within OKGIIK_01890 at 436.406 kb on - strand, within OKGIIK_01890 at 436.406 kb on - strand, within OKGIIK_01890 at 436.406 kb on - strand, within OKGIIK_01890 at 436.406 kb on - strand, within OKGIIK_01890 at 436.495 kb on + strand, within OKGIIK_01890 at 436.495 kb on + strand, within OKGIIK_01890 at 436.496 kb on - strand, within OKGIIK_01890 at 436.676 kb on - strand, within OKGIIK_01890 at 437.155 kb on + strand, within queC at 437.155 kb on + strand, within queC
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.25 remove 434,703 + -1.0 435,291 + -0.3 435,292 - -1.3 435,575 + ybgF OKGIIK_01885 0.29 +2.0 435,576 - ybgF OKGIIK_01885 0.29 +1.6 435,576 - ybgF OKGIIK_01885 0.29 -0.0 435,576 - ybgF OKGIIK_01885 0.29 -0.3 435,576 - ybgF OKGIIK_01885 0.29 -0.8 435,576 - ybgF OKGIIK_01885 0.29 -0.4 435,576 - ybgF OKGIIK_01885 0.29 +1.0 435,576 - ybgF OKGIIK_01885 0.29 -1.1 435,576 - ybgF OKGIIK_01885 0.29 +1.3 435,576 - ybgF OKGIIK_01885 0.29 -1.0 435,576 - ybgF OKGIIK_01885 0.29 +0.7 435,576 - ybgF OKGIIK_01885 0.29 -0.6 435,576 - ybgF OKGIIK_01885 0.29 +0.7 435,785 + ybgF OKGIIK_01885 0.55 -1.2 435,785 + ybgF OKGIIK_01885 0.55 +0.4 435,785 + ybgF OKGIIK_01885 0.55 +2.3 435,785 + ybgF OKGIIK_01885 0.55 -1.8 435,785 + ybgF OKGIIK_01885 0.55 +0.3 435,785 + ybgF OKGIIK_01885 0.55 +2.0 435,785 + ybgF OKGIIK_01885 0.55 +0.4 435,785 + ybgF OKGIIK_01885 0.55 +1.0 435,785 + ybgF OKGIIK_01885 0.55 -1.0 435,786 - ybgF OKGIIK_01885 0.55 +0.6 435,821 + ybgF OKGIIK_01885 0.59 -1.3 435,821 + ybgF OKGIIK_01885 0.59 +1.0 435,821 + ybgF OKGIIK_01885 0.59 -1.0 435,821 + ybgF OKGIIK_01885 0.59 +0.0 435,821 + ybgF OKGIIK_01885 0.59 +1.0 435,821 + ybgF OKGIIK_01885 0.59 +0.7 435,821 + ybgF OKGIIK_01885 0.59 -1.0 435,821 + ybgF OKGIIK_01885 0.59 -0.7 435,821 + ybgF OKGIIK_01885 0.59 +0.6 435,821 + ybgF OKGIIK_01885 0.59 -0.0 435,821 + ybgF OKGIIK_01885 0.59 +0.9 435,821 + ybgF OKGIIK_01885 0.59 -0.4 435,821 + ybgF OKGIIK_01885 0.59 -0.5 435,821 + ybgF OKGIIK_01885 0.59 +0.2 435,821 + ybgF OKGIIK_01885 0.59 -1.6 435,821 + ybgF OKGIIK_01885 0.59 -0.3 435,821 + ybgF OKGIIK_01885 0.59 +1.0 435,821 + ybgF OKGIIK_01885 0.59 -0.6 435,821 + ybgF OKGIIK_01885 0.59 +1.3 435,821 + ybgF OKGIIK_01885 0.59 -0.0 435,822 - ybgF OKGIIK_01885 0.59 +1.0 435,822 - ybgF OKGIIK_01885 0.59 +1.9 435,822 - ybgF OKGIIK_01885 0.59 +0.3 435,822 - ybgF OKGIIK_01885 0.59 +0.5 435,822 - ybgF OKGIIK_01885 0.59 +0.4 435,822 - ybgF OKGIIK_01885 0.59 -0.0 435,822 - ybgF OKGIIK_01885 0.59 +1.3 435,863 + ybgF OKGIIK_01885 0.64 +3.0 435,896 + ybgF OKGIIK_01885 0.68 -0.6 435,896 + ybgF OKGIIK_01885 0.68 +0.2 435,896 + ybgF OKGIIK_01885 0.68 +1.0 435,896 + ybgF OKGIIK_01885 0.68 -0.0 435,896 + ybgF OKGIIK_01885 0.68 -0.9 435,896 + ybgF OKGIIK_01885 0.68 -1.6 435,896 + ybgF OKGIIK_01885 0.68 +1.0 435,896 + ybgF OKGIIK_01885 0.68 -1.5 435,896 + ybgF OKGIIK_01885 0.68 +1.0 435,896 + ybgF OKGIIK_01885 0.68 +0.4 435,896 + ybgF OKGIIK_01885 0.68 +1.0 435,896 + ybgF OKGIIK_01885 0.68 -1.0 435,896 + ybgF OKGIIK_01885 0.68 +1.0 435,896 + ybgF OKGIIK_01885 0.68 -0.6 435,896 + ybgF OKGIIK_01885 0.68 +1.6 435,896 + ybgF OKGIIK_01885 0.68 -0.8 435,896 + ybgF OKGIIK_01885 0.68 +0.1 435,896 + ybgF OKGIIK_01885 0.68 +1.3 435,896 + ybgF OKGIIK_01885 0.68 -0.4 435,897 - ybgF OKGIIK_01885 0.68 +1.8 435,897 - ybgF OKGIIK_01885 0.68 -1.0 435,897 - ybgF OKGIIK_01885 0.68 -1.3 435,897 - ybgF OKGIIK_01885 0.68 -0.0 435,897 - ybgF OKGIIK_01885 0.68 +1.0 435,897 - ybgF OKGIIK_01885 0.68 -0.6 435,897 - ybgF OKGIIK_01885 0.68 -0.8 435,897 - ybgF OKGIIK_01885 0.68 +1.8 435,897 - ybgF OKGIIK_01885 0.68 +2.0 435,914 + ybgF OKGIIK_01885 0.70 +1.2 435,914 + ybgF OKGIIK_01885 0.70 -0.8 435,914 + ybgF OKGIIK_01885 0.70 +0.2 435,914 + ybgF OKGIIK_01885 0.70 -0.8 435,914 + ybgF OKGIIK_01885 0.70 +0.7 435,914 + ybgF OKGIIK_01885 0.70 -1.3 435,914 + ybgF OKGIIK_01885 0.70 -0.3 435,914 + ybgF OKGIIK_01885 0.70 +0.5 435,914 + ybgF OKGIIK_01885 0.70 -0.8 435,915 - ybgF OKGIIK_01885 0.71 -2.0 435,915 - ybgF OKGIIK_01885 0.71 +0.7 435,915 - ybgF OKGIIK_01885 0.71 +1.5 435,915 - ybgF OKGIIK_01885 0.71 +1.7 435,915 - ybgF OKGIIK_01885 0.71 -1.8 435,915 - ybgF OKGIIK_01885 0.71 +0.3 435,915 - ybgF OKGIIK_01885 0.71 -1.3 435,917 + ybgF OKGIIK_01885 0.71 +0.7 435,917 + ybgF OKGIIK_01885 0.71 +1.6 435,917 + ybgF OKGIIK_01885 0.71 -0.6 435,917 + ybgF OKGIIK_01885 0.71 -1.8 435,917 + ybgF OKGIIK_01885 0.71 +1.3 435,917 + ybgF OKGIIK_01885 0.71 +1.3 435,917 + ybgF OKGIIK_01885 0.71 -0.0 435,917 + ybgF OKGIIK_01885 0.71 +0.6 435,917 + ybgF OKGIIK_01885 0.71 +1.6 435,917 + ybgF OKGIIK_01885 0.71 -1.6 435,917 + ybgF OKGIIK_01885 0.71 -0.4 435,917 + ybgF OKGIIK_01885 0.71 -0.0 435,917 + ybgF OKGIIK_01885 0.71 -1.3 435,917 + ybgF OKGIIK_01885 0.71 -0.0 435,917 + ybgF OKGIIK_01885 0.71 +1.0 435,918 - ybgF OKGIIK_01885 0.71 +1.4 435,918 - ybgF OKGIIK_01885 0.71 +1.8 435,918 - ybgF OKGIIK_01885 0.71 +1.4 435,918 - ybgF OKGIIK_01885 0.71 +1.0 435,918 - ybgF OKGIIK_01885 0.71 +1.2 435,918 - ybgF OKGIIK_01885 0.71 +1.2 435,918 - ybgF OKGIIK_01885 0.71 +0.3 435,918 - ybgF OKGIIK_01885 0.71 -0.8 435,918 - ybgF OKGIIK_01885 0.71 +0.7 435,918 - ybgF OKGIIK_01885 0.71 -0.2 435,918 - ybgF OKGIIK_01885 0.71 +1.2 435,918 - ybgF OKGIIK_01885 0.71 -1.3 435,932 + ybgF OKGIIK_01885 0.73 -1.3 435,932 + ybgF OKGIIK_01885 0.73 +1.4 435,932 + ybgF OKGIIK_01885 0.73 +0.5 435,932 + ybgF OKGIIK_01885 0.73 -0.0 435,933 - ybgF OKGIIK_01885 0.73 +0.3 435,933 - ybgF OKGIIK_01885 0.73 +0.4 436,019 + ybgF OKGIIK_01885 0.83 -2.7 436,020 - ybgF OKGIIK_01885 0.83 +1.0 436,085 + +0.3 436,085 + -1.1 436,085 + -0.0 436,085 + +0.7 436,085 + +1.5 436,085 + +0.1 436,085 + -1.8 436,085 + +2.0 436,085 + +1.9 436,085 + +0.6 436,086 - +0.2 436,086 - +1.0 436,086 - -0.6 436,086 - +1.3 436,086 - -0.6 436,345 + OKGIIK_01890 0.26 +2.0 436,354 + OKGIIK_01890 0.27 -1.0 436,405 + OKGIIK_01890 0.34 -2.7 436,405 + OKGIIK_01890 0.34 +1.0 436,405 + OKGIIK_01890 0.34 -2.2 436,405 + OKGIIK_01890 0.34 +1.0 436,405 + OKGIIK_01890 0.34 +0.5 436,405 + OKGIIK_01890 0.34 +0.0 436,405 + OKGIIK_01890 0.34 -0.6 436,405 + OKGIIK_01890 0.34 -0.6 436,405 + OKGIIK_01890 0.34 +1.4 436,405 + OKGIIK_01890 0.34 +1.3 436,405 + OKGIIK_01890 0.34 +0.0 436,405 + OKGIIK_01890 0.34 -0.6 436,405 + OKGIIK_01890 0.34 -0.9 436,405 + OKGIIK_01890 0.34 +0.0 436,405 + OKGIIK_01890 0.34 +0.6 436,405 + OKGIIK_01890 0.34 -1.2 436,405 + OKGIIK_01890 0.34 -0.4 436,405 + OKGIIK_01890 0.34 -0.6 436,405 + OKGIIK_01890 0.34 +0.8 436,405 + OKGIIK_01890 0.34 +0.0 436,406 - OKGIIK_01890 0.34 -0.6 436,406 - OKGIIK_01890 0.34 +1.0 436,406 - OKGIIK_01890 0.34 +1.0 436,406 - OKGIIK_01890 0.34 +0.6 436,406 - OKGIIK_01890 0.34 +0.7 436,406 - OKGIIK_01890 0.34 +0.0 436,406 - OKGIIK_01890 0.34 +3.6 436,406 - OKGIIK_01890 0.34 -0.7 436,406 - OKGIIK_01890 0.34 -0.3 436,406 - OKGIIK_01890 0.34 +0.0 436,406 - OKGIIK_01890 0.34 +0.5 436,406 - OKGIIK_01890 0.34 +1.2 436,406 - OKGIIK_01890 0.34 -1.8 436,406 - OKGIIK_01890 0.34 -1.6 436,406 - OKGIIK_01890 0.34 +1.0 436,495 + OKGIIK_01890 0.47 -1.5 436,495 + OKGIIK_01890 0.47 -1.6 436,496 - OKGIIK_01890 0.47 +1.5 436,676 - OKGIIK_01890 0.73 -1.7 437,155 + queC OKGIIK_01895 0.13 -0.7 437,155 + queC OKGIIK_01895 0.13 +0.0
Or see this region's nucleotide sequence