Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_01605

Experiment: R2A_PIPES pH 4.25

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntispA and OKGIIK_01605 are separated by 60 nucleotidesOKGIIK_01605 and OKGIIK_01610 are separated by 95 nucleotides OKGIIK_01600: ispA - octaprenyl-diphosphate synthase, at 362,738 to 363,742 ispA OKGIIK_01605: OKGIIK_01605 - putative arabinose efflux permease, MFS family, at 363,803 to 365,077 _01605 OKGIIK_01610: OKGIIK_01610 - Sulfurtransferase, at 365,173 to 366,153 _01610 Position (kb) 363 364 365 366Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 363.773 kb on + strandat 363.774 kb on - strandat 363.774 kb on - strandat 363.775 kb on + strandat 363.775 kb on + strandat 363.776 kb on - strandat 363.776 kb on - strandat 363.836 kb on + strandat 363.836 kb on + strandat 363.836 kb on + strandat 363.836 kb on + strandat 363.836 kb on + strandat 363.836 kb on + strandat 363.836 kb on + strandat 363.836 kb on + strandat 363.836 kb on + strandat 363.836 kb on + strandat 363.836 kb on + strandat 363.836 kb on + strandat 363.836 kb on + strandat 363.836 kb on + strandat 363.837 kb on - strandat 363.837 kb on - strandat 363.837 kb on - strandat 363.837 kb on - strandat 363.837 kb on - strandat 363.837 kb on - strandat 363.837 kb on - strandat 363.837 kb on - strandat 363.837 kb on - strandat 363.838 kb on + strandat 363.838 kb on + strandat 363.838 kb on + strandat 363.838 kb on + strandat 363.838 kb on + strandat 363.838 kb on + strandat 363.838 kb on + strandat 363.838 kb on + strandat 363.838 kb on + strandat 363.838 kb on + strandat 363.838 kb on + strandat 363.839 kb on - strandat 363.839 kb on - strandat 363.839 kb on - strandat 363.980 kb on + strand, within OKGIIK_01605at 364.037 kb on + strand, within OKGIIK_01605at 364.038 kb on - strand, within OKGIIK_01605at 364.038 kb on - strand, within OKGIIK_01605at 364.197 kb on + strand, within OKGIIK_01605at 364.197 kb on + strand, within OKGIIK_01605at 364.197 kb on + strand, within OKGIIK_01605at 364.622 kb on + strand, within OKGIIK_01605at 364.622 kb on + strand, within OKGIIK_01605at 364.622 kb on + strand, within OKGIIK_01605at 364.622 kb on + strand, within OKGIIK_01605at 364.622 kb on + strand, within OKGIIK_01605at 364.622 kb on + strand, within OKGIIK_01605at 364.622 kb on + strand, within OKGIIK_01605at 364.622 kb on + strand, within OKGIIK_01605at 364.622 kb on + strand, within OKGIIK_01605at 364.622 kb on + strand, within OKGIIK_01605at 364.622 kb on + strand, within OKGIIK_01605at 364.623 kb on - strand, within OKGIIK_01605at 364.623 kb on - strand, within OKGIIK_01605at 364.623 kb on - strand, within OKGIIK_01605at 364.623 kb on - strand, within OKGIIK_01605at 364.623 kb on - strand, within OKGIIK_01605at 364.623 kb on - strand, within OKGIIK_01605at 364.623 kb on - strand, within OKGIIK_01605at 364.623 kb on - strand, within OKGIIK_01605at 364.623 kb on - strand, within OKGIIK_01605at 364.623 kb on - strand, within OKGIIK_01605at 364.623 kb on - strand, within OKGIIK_01605at 364.623 kb on - strand, within OKGIIK_01605at 364.673 kb on + strand, within OKGIIK_01605at 364.673 kb on + strand, within OKGIIK_01605at 364.673 kb on + strand, within OKGIIK_01605at 364.673 kb on + strand, within OKGIIK_01605at 364.673 kb on + strand, within OKGIIK_01605at 364.673 kb on + strand, within OKGIIK_01605at 364.673 kb on + strand, within OKGIIK_01605at 364.673 kb on + strand, within OKGIIK_01605at 364.673 kb on + strand, within OKGIIK_01605at 364.673 kb on + strand, within OKGIIK_01605at 364.673 kb on + strand, within OKGIIK_01605at 364.673 kb on + strand, within OKGIIK_01605at 364.673 kb on + strand, within OKGIIK_01605at 364.673 kb on + strand, within OKGIIK_01605at 364.673 kb on + strand, within OKGIIK_01605at 364.673 kb on + strand, within OKGIIK_01605at 364.673 kb on + strand, within OKGIIK_01605at 364.673 kb on + strand, within OKGIIK_01605at 364.673 kb on + strand, within OKGIIK_01605at 364.673 kb on + strand, within OKGIIK_01605at 364.673 kb on + strand, within OKGIIK_01605at 364.673 kb on + strand, within OKGIIK_01605at 364.673 kb on + strand, within OKGIIK_01605at 364.673 kb on + strand, within OKGIIK_01605at 364.673 kb on + strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.674 kb on - strand, within OKGIIK_01605at 364.892 kb on + strand, within OKGIIK_01605at 364.892 kb on + strand, within OKGIIK_01605at 364.892 kb on + strand, within OKGIIK_01605at 364.892 kb on + strand, within OKGIIK_01605at 364.893 kb on - strand, within OKGIIK_01605at 365.075 kb on + strandat 365.075 kb on + strandat 365.075 kb on + strandat 365.075 kb on + strandat 365.075 kb on + strandat 365.076 kb on - strandat 365.076 kb on - strandat 365.076 kb on - strandat 365.083 kb on + strandat 365.083 kb on + strandat 365.084 kb on - strandat 365.377 kb on + strand, within OKGIIK_01610at 365.377 kb on + strand, within OKGIIK_01610at 365.377 kb on + strand, within OKGIIK_01610at 365.377 kb on + strand, within OKGIIK_01610at 365.377 kb on + strand, within OKGIIK_01610at 365.378 kb on - strand, within OKGIIK_01610at 365.731 kb on + strand, within OKGIIK_01610at 365.731 kb on + strand, within OKGIIK_01610at 365.731 kb on + strand, within OKGIIK_01610at 365.731 kb on + strand, within OKGIIK_01610at 365.731 kb on + strand, within OKGIIK_01610at 365.731 kb on + strand, within OKGIIK_01610at 365.731 kb on + strand, within OKGIIK_01610at 365.731 kb on + strand, within OKGIIK_01610at 365.731 kb on + strand, within OKGIIK_01610at 365.731 kb on + strand, within OKGIIK_01610at 365.731 kb on + strand, within OKGIIK_01610at 365.731 kb on + strand, within OKGIIK_01610at 365.731 kb on + strand, within OKGIIK_01610at 365.731 kb on + strand, within OKGIIK_01610at 365.731 kb on + strand, within OKGIIK_01610at 365.732 kb on - strand, within OKGIIK_01610at 365.732 kb on - strand, within OKGIIK_01610at 365.732 kb on - strand, within OKGIIK_01610at 365.732 kb on - strand, within OKGIIK_01610at 365.732 kb on - strand, within OKGIIK_01610at 365.809 kb on + strand, within OKGIIK_01610at 365.810 kb on - strand, within OKGIIK_01610at 365.971 kb on + strand, within OKGIIK_01610at 365.971 kb on + strand, within OKGIIK_01610at 365.971 kb on + strand, within OKGIIK_01610at 365.972 kb on - strand, within OKGIIK_01610at 365.972 kb on - strand, within OKGIIK_01610

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.25
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363,773 + -3.2
363,774 - +0.7
363,774 - -0.4
363,775 + +0.2
363,775 + +0.7
363,776 - -0.0
363,776 - +0.1
363,836 + +0.7
363,836 + +0.5
363,836 + +0.7
363,836 + +1.6
363,836 + +1.3
363,836 + +1.3
363,836 + +1.7
363,836 + -1.0
363,836 + -0.3
363,836 + +0.6
363,836 + -0.8
363,836 + -0.8
363,836 + -0.2
363,836 + +0.1
363,837 - +0.6
363,837 - +1.3
363,837 - +0.6
363,837 - -1.3
363,837 - -0.3
363,837 - -0.2
363,837 - -0.7
363,837 - -0.5
363,837 - -0.1
363,838 + +1.1
363,838 + -0.8
363,838 + +0.2
363,838 + -1.3
363,838 + +0.7
363,838 + +0.3
363,838 + -0.5
363,838 + +0.7
363,838 + +0.3
363,838 + +1.3
363,838 + -1.0
363,839 - +0.3
363,839 - -0.8
363,839 - -0.3
363,980 + OKGIIK_01605 0.14 -0.6
364,037 + OKGIIK_01605 0.18 +1.3
364,038 - OKGIIK_01605 0.18 -1.2
364,038 - OKGIIK_01605 0.18 +0.1
364,197 + OKGIIK_01605 0.31 +1.4
364,197 + OKGIIK_01605 0.31 +0.4
364,197 + OKGIIK_01605 0.31 -0.0
364,622 + OKGIIK_01605 0.64 +0.2
364,622 + OKGIIK_01605 0.64 +0.4
364,622 + OKGIIK_01605 0.64 +1.0
364,622 + OKGIIK_01605 0.64 +0.7
364,622 + OKGIIK_01605 0.64 +0.7
364,622 + OKGIIK_01605 0.64 -0.4
364,622 + OKGIIK_01605 0.64 +0.7
364,622 + OKGIIK_01605 0.64 -0.2
364,622 + OKGIIK_01605 0.64 +1.2
364,622 + OKGIIK_01605 0.64 +0.7
364,622 + OKGIIK_01605 0.64 +0.8
364,623 - OKGIIK_01605 0.64 -0.6
364,623 - OKGIIK_01605 0.64 -0.3
364,623 - OKGIIK_01605 0.64 +0.3
364,623 - OKGIIK_01605 0.64 -2.0
364,623 - OKGIIK_01605 0.64 +0.3
364,623 - OKGIIK_01605 0.64 -0.6
364,623 - OKGIIK_01605 0.64 +1.0
364,623 - OKGIIK_01605 0.64 -0.3
364,623 - OKGIIK_01605 0.64 -0.0
364,623 - OKGIIK_01605 0.64 -0.0
364,623 - OKGIIK_01605 0.64 -0.8
364,623 - OKGIIK_01605 0.64 +0.4
364,673 + OKGIIK_01605 0.68 -2.2
364,673 + OKGIIK_01605 0.68 +0.1
364,673 + OKGIIK_01605 0.68 -0.0
364,673 + OKGIIK_01605 0.68 +1.4
364,673 + OKGIIK_01605 0.68 -1.5
364,673 + OKGIIK_01605 0.68 +0.6
364,673 + OKGIIK_01605 0.68 -2.6
364,673 + OKGIIK_01605 0.68 +0.4
364,673 + OKGIIK_01605 0.68 -0.1
364,673 + OKGIIK_01605 0.68 -0.0
364,673 + OKGIIK_01605 0.68 +0.2
364,673 + OKGIIK_01605 0.68 -1.3
364,673 + OKGIIK_01605 0.68 +0.3
364,673 + OKGIIK_01605 0.68 +1.0
364,673 + OKGIIK_01605 0.68 +2.1
364,673 + OKGIIK_01605 0.68 -0.8
364,673 + OKGIIK_01605 0.68 +0.7
364,673 + OKGIIK_01605 0.68 +1.3
364,673 + OKGIIK_01605 0.68 +0.7
364,673 + OKGIIK_01605 0.68 +1.0
364,673 + OKGIIK_01605 0.68 -0.2
364,673 + OKGIIK_01605 0.68 +1.4
364,673 + OKGIIK_01605 0.68 +0.5
364,673 + OKGIIK_01605 0.68 +0.3
364,673 + OKGIIK_01605 0.68 -1.6
364,674 - OKGIIK_01605 0.68 -0.6
364,674 - OKGIIK_01605 0.68 +0.3
364,674 - OKGIIK_01605 0.68 -0.1
364,674 - OKGIIK_01605 0.68 -1.2
364,674 - OKGIIK_01605 0.68 +0.7
364,674 - OKGIIK_01605 0.68 +1.4
364,674 - OKGIIK_01605 0.68 -0.7
364,674 - OKGIIK_01605 0.68 -0.0
364,674 - OKGIIK_01605 0.68 -0.3
364,674 - OKGIIK_01605 0.68 -2.5
364,674 - OKGIIK_01605 0.68 +0.7
364,674 - OKGIIK_01605 0.68 -1.6
364,674 - OKGIIK_01605 0.68 +0.2
364,674 - OKGIIK_01605 0.68 +1.5
364,674 - OKGIIK_01605 0.68 -0.8
364,674 - OKGIIK_01605 0.68 -0.0
364,674 - OKGIIK_01605 0.68 -0.1
364,674 - OKGIIK_01605 0.68 -0.5
364,674 - OKGIIK_01605 0.68 -1.8
364,674 - OKGIIK_01605 0.68 -0.2
364,674 - OKGIIK_01605 0.68 -0.3
364,674 - OKGIIK_01605 0.68 -0.3
364,674 - OKGIIK_01605 0.68 +0.3
364,674 - OKGIIK_01605 0.68 +0.1
364,674 - OKGIIK_01605 0.68 +1.3
364,674 - OKGIIK_01605 0.68 +0.6
364,674 - OKGIIK_01605 0.68 -0.0
364,892 + OKGIIK_01605 0.85 +0.4
364,892 + OKGIIK_01605 0.85 -0.4
364,892 + OKGIIK_01605 0.85 -0.4
364,892 + OKGIIK_01605 0.85 -0.0
364,893 - OKGIIK_01605 0.85 -0.2
365,075 + +0.4
365,075 + -1.5
365,075 + +1.0
365,075 + -2.3
365,075 + +1.0
365,076 - +0.5
365,076 - +0.1
365,076 - +0.4
365,083 + +0.2
365,083 + -1.0
365,084 - +1.2
365,377 + OKGIIK_01610 0.21 -1.1
365,377 + OKGIIK_01610 0.21 -0.6
365,377 + OKGIIK_01610 0.21 +0.3
365,377 + OKGIIK_01610 0.21 -0.8
365,377 + OKGIIK_01610 0.21 +0.3
365,378 - OKGIIK_01610 0.21 -0.4
365,731 + OKGIIK_01610 0.57 -1.2
365,731 + OKGIIK_01610 0.57 +1.0
365,731 + OKGIIK_01610 0.57 +0.1
365,731 + OKGIIK_01610 0.57 +1.6
365,731 + OKGIIK_01610 0.57 +0.7
365,731 + OKGIIK_01610 0.57 -0.0
365,731 + OKGIIK_01610 0.57 +0.2
365,731 + OKGIIK_01610 0.57 +1.0
365,731 + OKGIIK_01610 0.57 -0.0
365,731 + OKGIIK_01610 0.57 -1.7
365,731 + OKGIIK_01610 0.57 +0.6
365,731 + OKGIIK_01610 0.57 +1.2
365,731 + OKGIIK_01610 0.57 -1.2
365,731 + OKGIIK_01610 0.57 +0.7
365,731 + OKGIIK_01610 0.57 -1.0
365,732 - OKGIIK_01610 0.57 +0.1
365,732 - OKGIIK_01610 0.57 -1.0
365,732 - OKGIIK_01610 0.57 +1.0
365,732 - OKGIIK_01610 0.57 +1.0
365,732 - OKGIIK_01610 0.57 +1.1
365,809 + OKGIIK_01610 0.65 -0.3
365,810 - OKGIIK_01610 0.65 -0.0
365,971 + OKGIIK_01610 0.81 -0.6
365,971 + OKGIIK_01610 0.81 +1.6
365,971 + OKGIIK_01610 0.81 +0.6
365,972 - OKGIIK_01610 0.81 -1.3
365,972 - OKGIIK_01610 0.81 -0.1

Or see this region's nucleotide sequence