Experiment: R2A_PIPES pH 4.25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fusA and OKGIIK_01475 are separated by 291 nucleotides OKGIIK_01475 and OKGIIK_01480 overlap by 4 nucleotides
OKGIIK_01470: fusA - elongation factor G, at 329,154 to 331,283
fusA
OKGIIK_01475: OKGIIK_01475 - Response regulatory domain-containing protein, at 331,575 to 331,937
_01475
OKGIIK_01480: OKGIIK_01480 - Protein-glutamate O-methyltransferase, at 331,934 to 335,494
_01480
Position (kb) 331
332 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 330.718 kb on + strand, within fusA at 330.718 kb on + strand, within fusA at 330.719 kb on - strand, within fusA at 330.719 kb on - strand, within fusA at 330.719 kb on - strand, within fusA at 330.871 kb on + strand, within fusA at 330.871 kb on + strand, within fusA at 330.871 kb on + strand, within fusA at 330.871 kb on + strand, within fusA at 330.871 kb on + strand, within fusA at 330.871 kb on + strand, within fusA at 330.871 kb on + strand, within fusA at 330.871 kb on + strand, within fusA at 330.872 kb on - strand, within fusA at 330.872 kb on - strand, within fusA at 330.872 kb on - strand, within fusA at 330.872 kb on - strand, within fusA at 330.872 kb on - strand, within fusA at 330.872 kb on - strand, within fusA at 330.872 kb on - strand, within fusA at 330.872 kb on - strand, within fusA at 330.892 kb on + strand, within fusA at 330.892 kb on + strand, within fusA at 330.892 kb on + strand, within fusA at 330.892 kb on + strand, within fusA at 330.892 kb on + strand, within fusA at 330.892 kb on + strand, within fusA at 330.892 kb on + strand, within fusA at 330.892 kb on + strand, within fusA at 330.892 kb on + strand, within fusA at 330.892 kb on + strand, within fusA at 330.892 kb on + strand, within fusA at 330.892 kb on + strand, within fusA at 330.892 kb on + strand, within fusA at 330.893 kb on - strand, within fusA at 330.893 kb on - strand, within fusA at 330.893 kb on - strand, within fusA at 330.893 kb on - strand, within fusA at 330.893 kb on - strand, within fusA at 330.893 kb on - strand, within fusA at 330.893 kb on - strand, within fusA at 330.893 kb on - strand, within fusA at 330.893 kb on - strand, within fusA at 331.114 kb on + strand at 331.114 kb on + strand at 331.114 kb on + strand at 331.114 kb on + strand at 331.114 kb on + strand at 331.114 kb on + strand at 331.115 kb on - strand at 331.115 kb on - strand at 331.115 kb on - strand at 331.115 kb on - strand at 331.115 kb on - strand at 331.115 kb on - strand at 331.115 kb on - strand at 331.115 kb on - strand at 331.186 kb on + strand at 331.186 kb on + strand at 331.186 kb on + strand at 331.187 kb on - strand at 331.187 kb on - strand at 331.187 kb on - strand at 331.187 kb on - strand at 331.187 kb on - strand at 331.189 kb on + strand at 331.189 kb on + strand at 331.189 kb on + strand at 331.189 kb on + strand at 331.189 kb on + strand at 331.189 kb on + strand at 331.189 kb on + strand at 331.189 kb on + strand at 331.190 kb on - strand at 331.190 kb on - strand at 331.190 kb on - strand at 331.190 kb on - strand at 331.255 kb on + strand at 331.335 kb on + strand at 331.335 kb on + strand at 331.335 kb on + strand at 331.335 kb on + strand at 331.335 kb on + strand at 331.335 kb on + strand at 331.335 kb on + strand at 331.335 kb on + strand at 331.335 kb on + strand at 331.336 kb on - strand at 331.336 kb on - strand at 331.336 kb on - strand at 331.336 kb on - strand at 331.336 kb on - strand at 331.336 kb on - strand at 331.336 kb on - strand at 331.336 kb on - strand at 331.400 kb on + strand at 331.624 kb on + strand, within OKGIIK_01475 at 331.624 kb on + strand, within OKGIIK_01475 at 331.624 kb on + strand, within OKGIIK_01475 at 331.625 kb on - strand, within OKGIIK_01475 at 331.625 kb on - strand, within OKGIIK_01475 at 331.625 kb on - strand, within OKGIIK_01475 at 331.704 kb on + strand, within OKGIIK_01475 at 331.704 kb on + strand, within OKGIIK_01475 at 331.704 kb on + strand, within OKGIIK_01475 at 331.704 kb on + strand, within OKGIIK_01475 at 331.705 kb on - strand, within OKGIIK_01475 at 331.705 kb on - strand, within OKGIIK_01475 at 331.917 kb on + strand at 331.918 kb on - strand at 331.918 kb on - strand at 331.918 kb on - strand at 331.918 kb on - strand at 331.918 kb on - strand at 331.918 kb on - strand at 331.918 kb on - strand at 331.918 kb on - strand at 331.925 kb on + strand at 331.925 kb on + strand at 331.925 kb on + strand at 331.926 kb on - strand at 331.926 kb on - strand at 331.926 kb on - strand at 331.961 kb on + strand at 331.961 kb on + strand at 331.961 kb on + strand at 331.961 kb on + strand at 331.961 kb on + strand at 331.961 kb on + strand at 331.962 kb on - strand at 331.962 kb on - strand at 331.962 kb on - strand at 331.962 kb on - strand at 331.962 kb on - strand at 331.962 kb on - strand at 331.962 kb on - strand at 331.962 kb on - strand at 331.963 kb on + strand at 331.963 kb on + strand at 331.963 kb on + strand at 331.963 kb on + strand at 331.963 kb on + strand at 331.963 kb on + strand at 331.963 kb on + strand at 331.963 kb on + strand at 331.963 kb on + strand at 331.964 kb on - strand at 331.964 kb on - strand at 331.966 kb on - strand at 332.006 kb on + strand at 332.006 kb on + strand at 332.007 kb on - strand at 332.007 kb on - strand at 332.025 kb on + strand at 332.026 kb on - strand at 332.026 kb on - strand at 332.193 kb on + strand at 332.193 kb on + strand at 332.193 kb on + strand at 332.193 kb on + strand at 332.194 kb on - strand at 332.194 kb on - strand at 332.279 kb on + strand at 332.279 kb on + strand at 332.280 kb on - strand at 332.280 kb on - strand at 332.493 kb on - strand, within OKGIIK_01480 at 332.548 kb on + strand, within OKGIIK_01480 at 332.548 kb on + strand, within OKGIIK_01480 at 332.548 kb on + strand, within OKGIIK_01480 at 332.637 kb on + strand, within OKGIIK_01480 at 332.637 kb on + strand, within OKGIIK_01480 at 332.638 kb on - strand, within OKGIIK_01480 at 332.765 kb on + strand, within OKGIIK_01480 at 332.766 kb on - strand, within OKGIIK_01480 at 332.766 kb on - strand, within OKGIIK_01480 at 332.766 kb on - strand, within OKGIIK_01480 at 332.766 kb on - strand, within OKGIIK_01480 at 332.766 kb on - strand, within OKGIIK_01480
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.25 remove 330,718 + fusA OKGIIK_01470 0.73 -0.7 330,718 + fusA OKGIIK_01470 0.73 +1.0 330,719 - fusA OKGIIK_01470 0.73 +1.6 330,719 - fusA OKGIIK_01470 0.73 -1.0 330,719 - fusA OKGIIK_01470 0.73 +2.1 330,871 + fusA OKGIIK_01470 0.81 -0.6 330,871 + fusA OKGIIK_01470 0.81 -1.0 330,871 + fusA OKGIIK_01470 0.81 -1.5 330,871 + fusA OKGIIK_01470 0.81 +1.1 330,871 + fusA OKGIIK_01470 0.81 -0.9 330,871 + fusA OKGIIK_01470 0.81 -2.2 330,871 + fusA OKGIIK_01470 0.81 +0.5 330,871 + fusA OKGIIK_01470 0.81 -1.0 330,872 - fusA OKGIIK_01470 0.81 -1.9 330,872 - fusA OKGIIK_01470 0.81 +1.2 330,872 - fusA OKGIIK_01470 0.81 -1.2 330,872 - fusA OKGIIK_01470 0.81 -0.2 330,872 - fusA OKGIIK_01470 0.81 -2.0 330,872 - fusA OKGIIK_01470 0.81 -1.2 330,872 - fusA OKGIIK_01470 0.81 -1.7 330,872 - fusA OKGIIK_01470 0.81 -1.9 330,892 + fusA OKGIIK_01470 0.82 -2.0 330,892 + fusA OKGIIK_01470 0.82 -0.2 330,892 + fusA OKGIIK_01470 0.82 -0.0 330,892 + fusA OKGIIK_01470 0.82 +2.0 330,892 + fusA OKGIIK_01470 0.82 -0.6 330,892 + fusA OKGIIK_01470 0.82 -0.7 330,892 + fusA OKGIIK_01470 0.82 -0.0 330,892 + fusA OKGIIK_01470 0.82 +3.1 330,892 + fusA OKGIIK_01470 0.82 -0.0 330,892 + fusA OKGIIK_01470 0.82 -0.4 330,892 + fusA OKGIIK_01470 0.82 +0.4 330,892 + fusA OKGIIK_01470 0.82 +0.0 330,892 + fusA OKGIIK_01470 0.82 -2.2 330,893 - fusA OKGIIK_01470 0.82 +1.5 330,893 - fusA OKGIIK_01470 0.82 -3.9 330,893 - fusA OKGIIK_01470 0.82 +0.7 330,893 - fusA OKGIIK_01470 0.82 +0.1 330,893 - fusA OKGIIK_01470 0.82 +0.5 330,893 - fusA OKGIIK_01470 0.82 +1.8 330,893 - fusA OKGIIK_01470 0.82 -1.0 330,893 - fusA OKGIIK_01470 0.82 +0.1 330,893 - fusA OKGIIK_01470 0.82 +0.9 331,114 + -2.5 331,114 + +0.6 331,114 + +1.0 331,114 + -1.2 331,114 + -1.0 331,114 + +0.1 331,115 - -0.9 331,115 - -0.4 331,115 - -0.8 331,115 - -0.3 331,115 - -0.7 331,115 - -2.2 331,115 - +0.4 331,115 - +0.1 331,186 + +1.0 331,186 + -1.4 331,186 + -0.3 331,187 - -1.2 331,187 - +0.2 331,187 - +0.1 331,187 - -1.9 331,187 - -0.4 331,189 + +0.4 331,189 + +1.2 331,189 + -1.3 331,189 + +0.1 331,189 + -0.6 331,189 + +0.5 331,189 + -2.4 331,189 + -1.2 331,190 - +0.6 331,190 - -1.7 331,190 - +0.5 331,190 - -0.0 331,255 + -0.6 331,335 + +1.6 331,335 + -0.9 331,335 + -0.6 331,335 + -1.8 331,335 + +0.4 331,335 + -1.4 331,335 + -0.0 331,335 + -1.2 331,335 + -1.0 331,336 - -1.0 331,336 - +2.0 331,336 - -0.6 331,336 - -0.4 331,336 - -0.0 331,336 - -0.4 331,336 - +1.0 331,336 - -1.0 331,400 + -1.2 331,624 + OKGIIK_01475 0.13 -1.4 331,624 + OKGIIK_01475 0.13 +0.0 331,624 + OKGIIK_01475 0.13 -0.2 331,625 - OKGIIK_01475 0.14 -0.6 331,625 - OKGIIK_01475 0.14 -1.0 331,625 - OKGIIK_01475 0.14 -0.3 331,704 + OKGIIK_01475 0.36 +1.0 331,704 + OKGIIK_01475 0.36 -0.2 331,704 + OKGIIK_01475 0.36 -1.2 331,704 + OKGIIK_01475 0.36 +0.3 331,705 - OKGIIK_01475 0.36 -0.4 331,705 - OKGIIK_01475 0.36 -2.4 331,917 + +0.2 331,918 - -0.0 331,918 - +0.3 331,918 - -0.4 331,918 - -1.3 331,918 - +1.6 331,918 - +0.4 331,918 - +0.4 331,918 - -0.2 331,925 + -2.0 331,925 + -1.3 331,925 + +0.4 331,926 - -0.4 331,926 - -0.4 331,926 - -0.2 331,961 + -0.4 331,961 + +0.6 331,961 + -1.9 331,961 + -1.9 331,961 + -1.2 331,961 + -1.6 331,962 - +0.1 331,962 - +0.7 331,962 - -0.8 331,962 - -0.9 331,962 - +0.3 331,962 - +0.6 331,962 - -0.9 331,962 - -0.0 331,963 + +1.0 331,963 + +0.1 331,963 + -1.0 331,963 + -1.1 331,963 + +0.4 331,963 + -2.2 331,963 + +0.2 331,963 + -0.6 331,963 + +0.7 331,964 - -2.0 331,964 - +1.5 331,966 - -1.4 332,006 + +0.8 332,006 + +0.1 332,007 - -0.5 332,007 - +1.0 332,025 + +0.1 332,026 - -1.0 332,026 - +0.3 332,193 + -1.0 332,193 + -1.6 332,193 + +0.3 332,193 + +0.6 332,194 - -0.6 332,194 - -1.0 332,279 + +0.4 332,279 + -1.9 332,280 - -2.2 332,280 - -0.6 332,493 - OKGIIK_01480 0.16 -0.6 332,548 + OKGIIK_01480 0.17 -0.6 332,548 + OKGIIK_01480 0.17 +0.8 332,548 + OKGIIK_01480 0.17 -1.9 332,637 + OKGIIK_01480 0.20 +0.5 332,637 + OKGIIK_01480 0.20 +0.9 332,638 - OKGIIK_01480 0.20 +1.0 332,765 + OKGIIK_01480 0.23 +0.1 332,766 - OKGIIK_01480 0.23 +0.2 332,766 - OKGIIK_01480 0.23 -0.3 332,766 - OKGIIK_01480 0.23 -1.8 332,766 - OKGIIK_01480 0.23 -0.7 332,766 - OKGIIK_01480 0.23 -0.6
Or see this region's nucleotide sequence