Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_01445

Experiment: R2A_PIPES pH 4.25

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_01440 and OKGIIK_01445 are separated by 97 nucleotidesOKGIIK_01445 and OKGIIK_01450 are separated by 337 nucleotidesOKGIIK_01450 and OKGIIK_01455 overlap by 4 nucleotides OKGIIK_01440: OKGIIK_01440 - hypothetical protein, at 322,205 to 322,831 _01440 OKGIIK_01445: OKGIIK_01445 - hypothetical protein, at 322,929 to 323,171 _01445 OKGIIK_01450: OKGIIK_01450 - transcriptional regulator, at 323,509 to 323,859 _01450 OKGIIK_01455: OKGIIK_01455 - DUF6516 domain-containing protein, at 323,856 to 324,221 _01455 Position (kb) 322 323 324Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 321.944 kb on + strandat 321.944 kb on + strandat 321.944 kb on + strandat 321.945 kb on - strandat 321.960 kb on - strandat 322.005 kb on + strandat 322.005 kb on + strandat 322.019 kb on - strandat 322.040 kb on + strandat 322.040 kb on + strandat 322.041 kb on - strandat 322.041 kb on - strandat 322.041 kb on - strandat 322.041 kb on - strandat 322.060 kb on + strandat 322.060 kb on + strandat 322.061 kb on - strandat 322.061 kb on - strandat 322.071 kb on - strandat 322.154 kb on + strandat 322.166 kb on + strandat 322.166 kb on + strandat 322.191 kb on + strandat 322.206 kb on + strandat 322.207 kb on - strandat 322.207 kb on - strandat 322.207 kb on - strandat 322.246 kb on + strandat 322.247 kb on - strandat 322.295 kb on + strand, within OKGIIK_01440at 322.295 kb on + strand, within OKGIIK_01440at 322.295 kb on + strand, within OKGIIK_01440at 322.295 kb on + strand, within OKGIIK_01440at 322.295 kb on + strand, within OKGIIK_01440at 322.296 kb on - strand, within OKGIIK_01440at 322.304 kb on + strand, within OKGIIK_01440at 322.317 kb on + strand, within OKGIIK_01440at 322.322 kb on + strand, within OKGIIK_01440at 322.322 kb on + strand, within OKGIIK_01440at 322.322 kb on + strand, within OKGIIK_01440at 322.323 kb on - strand, within OKGIIK_01440at 322.356 kb on + strand, within OKGIIK_01440at 322.356 kb on + strand, within OKGIIK_01440at 322.356 kb on + strand, within OKGIIK_01440at 322.356 kb on + strand, within OKGIIK_01440at 322.357 kb on - strand, within OKGIIK_01440at 322.357 kb on - strand, within OKGIIK_01440at 322.360 kb on + strand, within OKGIIK_01440at 322.361 kb on - strand, within OKGIIK_01440at 322.361 kb on - strand, within OKGIIK_01440at 322.396 kb on + strand, within OKGIIK_01440at 322.397 kb on - strand, within OKGIIK_01440at 322.442 kb on + strand, within OKGIIK_01440at 322.443 kb on - strand, within OKGIIK_01440at 322.450 kb on + strand, within OKGIIK_01440at 322.450 kb on + strand, within OKGIIK_01440at 322.450 kb on + strand, within OKGIIK_01440at 322.450 kb on + strand, within OKGIIK_01440at 322.450 kb on + strand, within OKGIIK_01440at 322.484 kb on + strand, within OKGIIK_01440at 322.531 kb on + strand, within OKGIIK_01440at 322.531 kb on + strand, within OKGIIK_01440at 322.531 kb on + strand, within OKGIIK_01440at 322.648 kb on + strand, within OKGIIK_01440at 322.668 kb on + strand, within OKGIIK_01440at 322.668 kb on + strand, within OKGIIK_01440at 322.674 kb on + strand, within OKGIIK_01440at 322.674 kb on + strand, within OKGIIK_01440at 322.674 kb on + strand, within OKGIIK_01440at 322.675 kb on - strand, within OKGIIK_01440at 322.720 kb on - strand, within OKGIIK_01440at 322.779 kb on + strandat 322.792 kb on - strandat 322.808 kb on + strandat 322.849 kb on + strandat 322.849 kb on + strandat 322.850 kb on - strandat 322.866 kb on + strandat 322.930 kb on + strandat 322.930 kb on + strandat 322.930 kb on + strandat 322.930 kb on + strandat 322.931 kb on - strandat 322.931 kb on - strandat 322.991 kb on + strand, within OKGIIK_01445at 323.053 kb on - strand, within OKGIIK_01445at 323.061 kb on + strand, within OKGIIK_01445at 323.254 kb on - strandat 323.254 kb on - strandat 323.254 kb on - strandat 323.254 kb on - strandat 323.254 kb on - strandat 323.254 kb on - strandat 323.254 kb on - strandat 323.254 kb on - strandat 323.254 kb on - strandat 323.254 kb on - strandat 323.496 kb on + strandat 323.496 kb on + strandat 323.591 kb on + strand, within OKGIIK_01450at 323.591 kb on + strand, within OKGIIK_01450at 323.626 kb on - strand, within OKGIIK_01450at 323.877 kb on + strandat 323.877 kb on + strandat 323.977 kb on + strand, within OKGIIK_01455at 323.978 kb on - strand, within OKGIIK_01455at 323.998 kb on + strand, within OKGIIK_01455at 324.090 kb on + strand, within OKGIIK_01455at 324.090 kb on + strand, within OKGIIK_01455at 324.090 kb on + strand, within OKGIIK_01455at 324.091 kb on - strand, within OKGIIK_01455at 324.091 kb on - strand, within OKGIIK_01455at 324.091 kb on - strand, within OKGIIK_01455at 324.091 kb on - strand, within OKGIIK_01455at 324.091 kb on - strand, within OKGIIK_01455at 324.091 kb on - strand, within OKGIIK_01455at 324.122 kb on + strand, within OKGIIK_01455at 324.166 kb on + strand, within OKGIIK_01455at 324.166 kb on + strand, within OKGIIK_01455at 324.166 kb on + strand, within OKGIIK_01455at 324.166 kb on + strand, within OKGIIK_01455at 324.166 kb on + strand, within OKGIIK_01455at 324.166 kb on + strand, within OKGIIK_01455at 324.166 kb on + strand, within OKGIIK_01455at 324.167 kb on - strand, within OKGIIK_01455at 324.167 kb on - strand, within OKGIIK_01455at 324.167 kb on - strand, within OKGIIK_01455at 324.167 kb on - strand, within OKGIIK_01455at 324.167 kb on - strand, within OKGIIK_01455at 324.167 kb on - strand, within OKGIIK_01455at 324.167 kb on - strand, within OKGIIK_01455at 324.167 kb on - strand, within OKGIIK_01455at 324.167 kb on - strand, within OKGIIK_01455at 324.167 kb on - strand, within OKGIIK_01455at 324.167 kb on - strand, within OKGIIK_01455

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.25
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321,944 + -0.2
321,944 + +0.8
321,944 + +0.1
321,945 - +0.6
321,960 - +0.7
322,005 + -0.3
322,005 + -1.9
322,019 - -1.0
322,040 + +0.1
322,040 + -0.8
322,041 - -1.3
322,041 - +0.5
322,041 - -0.3
322,041 - -0.0
322,060 + -0.5
322,060 + +0.1
322,061 - -0.0
322,061 - -2.0
322,071 - +0.2
322,154 + +0.1
322,166 + -0.4
322,166 + -3.0
322,191 + +1.5
322,206 + +0.2
322,207 - -0.7
322,207 - -0.9
322,207 - -3.0
322,246 + -0.0
322,247 - +0.1
322,295 + OKGIIK_01440 0.14 -1.0
322,295 + OKGIIK_01440 0.14 -1.0
322,295 + OKGIIK_01440 0.14 -0.1
322,295 + OKGIIK_01440 0.14 -0.0
322,295 + OKGIIK_01440 0.14 -0.8
322,296 - OKGIIK_01440 0.15 -0.4
322,304 + OKGIIK_01440 0.16 -0.0
322,317 + OKGIIK_01440 0.18 -0.4
322,322 + OKGIIK_01440 0.19 +0.2
322,322 + OKGIIK_01440 0.19 -0.6
322,322 + OKGIIK_01440 0.19 -0.6
322,323 - OKGIIK_01440 0.19 +0.3
322,356 + OKGIIK_01440 0.24 -1.6
322,356 + OKGIIK_01440 0.24 +0.2
322,356 + OKGIIK_01440 0.24 +0.2
322,356 + OKGIIK_01440 0.24 +0.2
322,357 - OKGIIK_01440 0.24 +0.3
322,357 - OKGIIK_01440 0.24 +0.5
322,360 + OKGIIK_01440 0.25 -1.2
322,361 - OKGIIK_01440 0.25 -1.4
322,361 - OKGIIK_01440 0.25 -0.3
322,396 + OKGIIK_01440 0.30 -0.0
322,397 - OKGIIK_01440 0.31 -0.6
322,442 + OKGIIK_01440 0.38 +0.6
322,443 - OKGIIK_01440 0.38 +1.6
322,450 + OKGIIK_01440 0.39 -0.3
322,450 + OKGIIK_01440 0.39 +0.3
322,450 + OKGIIK_01440 0.39 +1.0
322,450 + OKGIIK_01440 0.39 -1.4
322,450 + OKGIIK_01440 0.39 -0.2
322,484 + OKGIIK_01440 0.44 +0.2
322,531 + OKGIIK_01440 0.52 +0.5
322,531 + OKGIIK_01440 0.52 -2.0
322,531 + OKGIIK_01440 0.52 -2.3
322,648 + OKGIIK_01440 0.71 -0.8
322,668 + OKGIIK_01440 0.74 +1.0
322,668 + OKGIIK_01440 0.74 -1.1
322,674 + OKGIIK_01440 0.75 +0.7
322,674 + OKGIIK_01440 0.75 +0.7
322,674 + OKGIIK_01440 0.75 -1.4
322,675 - OKGIIK_01440 0.75 -0.0
322,720 - OKGIIK_01440 0.82 -1.9
322,779 + -0.5
322,792 - +1.4
322,808 + -0.2
322,849 + -0.5
322,849 + -0.3
322,850 - -0.8
322,866 + -0.2
322,930 + -0.6
322,930 + +0.3
322,930 + +0.4
322,930 + -1.1
322,931 - -1.9
322,931 - +0.1
322,991 + OKGIIK_01445 0.26 -0.3
323,053 - OKGIIK_01445 0.51 -1.0
323,061 + OKGIIK_01445 0.54 -0.2
323,254 - -0.3
323,254 - +0.0
323,254 - +1.0
323,254 - -0.5
323,254 - -1.9
323,254 - -0.0
323,254 - -0.2
323,254 - -0.8
323,254 - +0.6
323,254 - +0.9
323,496 + -0.5
323,496 + -0.0
323,591 + OKGIIK_01450 0.23 +0.2
323,591 + OKGIIK_01450 0.23 -0.4
323,626 - OKGIIK_01450 0.33 -0.6
323,877 + -0.6
323,877 + -0.6
323,977 + OKGIIK_01455 0.33 -1.4
323,978 - OKGIIK_01455 0.33 -0.8
323,998 + OKGIIK_01455 0.39 +1.0
324,090 + OKGIIK_01455 0.64 -1.6
324,090 + OKGIIK_01455 0.64 -1.2
324,090 + OKGIIK_01455 0.64 -1.7
324,091 - OKGIIK_01455 0.64 -0.2
324,091 - OKGIIK_01455 0.64 -0.5
324,091 - OKGIIK_01455 0.64 -0.0
324,091 - OKGIIK_01455 0.64 +0.1
324,091 - OKGIIK_01455 0.64 -0.0
324,091 - OKGIIK_01455 0.64 +0.2
324,122 + OKGIIK_01455 0.73 -1.2
324,166 + OKGIIK_01455 0.85 -0.2
324,166 + OKGIIK_01455 0.85 +0.1
324,166 + OKGIIK_01455 0.85 -0.9
324,166 + OKGIIK_01455 0.85 -0.0
324,166 + OKGIIK_01455 0.85 -1.4
324,166 + OKGIIK_01455 0.85 +0.5
324,166 + OKGIIK_01455 0.85 -0.9
324,167 - OKGIIK_01455 0.85 -2.6
324,167 - OKGIIK_01455 0.85 +0.6
324,167 - OKGIIK_01455 0.85 -0.0
324,167 - OKGIIK_01455 0.85 +2.1
324,167 - OKGIIK_01455 0.85 +1.3
324,167 - OKGIIK_01455 0.85 -0.2
324,167 - OKGIIK_01455 0.85 +0.2
324,167 - OKGIIK_01455 0.85 +0.2
324,167 - OKGIIK_01455 0.85 -0.5
324,167 - OKGIIK_01455 0.85 -1.0
324,167 - OKGIIK_01455 0.85 +0.5

Or see this region's nucleotide sequence