Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_01255

Experiment: R2A_PIPES pH 4.25

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_01250 and fixB are separated by 117 nucleotidesfixB and fixA are separated by 112 nucleotidesfixA and OKGIIK_01265 are separated by 117 nucleotides OKGIIK_01250: OKGIIK_01250 - UbiA family prenyltransferase, at 273,419 to 274,843 _01250 OKGIIK_01255: fixB - electron transfer flavoprotein subunit alpha, at 274,961 to 275,902 fixB OKGIIK_01260: fixA - EtfB protein, at 276,015 to 276,761 fixA OKGIIK_01265: OKGIIK_01265 - Glycosyltransferase WbsX, at 276,879 to 278,939 _01265 Position (kb) 274 275 276Strain fitness (log2 ratio) -3 -2 -1 0 1at 274.002 kb on - strand, within OKGIIK_01250at 274.037 kb on - strand, within OKGIIK_01250at 274.108 kb on + strand, within OKGIIK_01250at 274.108 kb on + strand, within OKGIIK_01250at 274.134 kb on + strand, within OKGIIK_01250at 274.134 kb on + strand, within OKGIIK_01250at 274.134 kb on + strand, within OKGIIK_01250at 274.134 kb on + strand, within OKGIIK_01250at 274.134 kb on + strand, within OKGIIK_01250at 274.134 kb on + strand, within OKGIIK_01250at 274.134 kb on + strand, within OKGIIK_01250at 274.135 kb on - strand, within OKGIIK_01250at 274.135 kb on - strand, within OKGIIK_01250at 274.135 kb on - strand, within OKGIIK_01250at 274.135 kb on - strand, within OKGIIK_01250at 274.163 kb on + strand, within OKGIIK_01250at 274.163 kb on + strand, within OKGIIK_01250at 274.164 kb on - strand, within OKGIIK_01250at 274.164 kb on - strand, within OKGIIK_01250at 274.235 kb on + strand, within OKGIIK_01250at 274.235 kb on + strand, within OKGIIK_01250at 274.235 kb on + strand, within OKGIIK_01250at 274.236 kb on - strand, within OKGIIK_01250at 274.236 kb on - strand, within OKGIIK_01250at 274.236 kb on - strand, within OKGIIK_01250at 274.236 kb on - strand, within OKGIIK_01250at 274.236 kb on - strand, within OKGIIK_01250at 274.236 kb on - strand, within OKGIIK_01250at 274.268 kb on + strand, within OKGIIK_01250at 274.268 kb on + strand, within OKGIIK_01250at 274.268 kb on + strand, within OKGIIK_01250at 274.268 kb on + strand, within OKGIIK_01250at 274.269 kb on - strand, within OKGIIK_01250at 274.269 kb on - strand, within OKGIIK_01250at 274.269 kb on - strand, within OKGIIK_01250at 274.269 kb on - strand, within OKGIIK_01250at 274.269 kb on - strand, within OKGIIK_01250at 274.269 kb on - strand, within OKGIIK_01250at 274.324 kb on + strand, within OKGIIK_01250at 274.325 kb on - strand, within OKGIIK_01250at 274.325 kb on - strand, within OKGIIK_01250at 274.325 kb on - strand, within OKGIIK_01250at 274.379 kb on - strand, within OKGIIK_01250at 274.453 kb on - strand, within OKGIIK_01250at 274.453 kb on - strand, within OKGIIK_01250at 274.467 kb on - strand, within OKGIIK_01250at 274.491 kb on - strand, within OKGIIK_01250at 274.514 kb on + strand, within OKGIIK_01250at 274.515 kb on - strand, within OKGIIK_01250at 274.515 kb on - strand, within OKGIIK_01250at 274.515 kb on - strand, within OKGIIK_01250at 274.529 kb on + strand, within OKGIIK_01250at 274.530 kb on - strand, within OKGIIK_01250at 274.598 kb on + strand, within OKGIIK_01250at 274.616 kb on + strand, within OKGIIK_01250at 274.641 kb on + strand, within OKGIIK_01250at 274.641 kb on + strand, within OKGIIK_01250at 274.641 kb on + strand, within OKGIIK_01250at 274.642 kb on - strand, within OKGIIK_01250at 274.642 kb on - strand, within OKGIIK_01250at 274.642 kb on - strand, within OKGIIK_01250at 274.642 kb on - strand, within OKGIIK_01250at 274.660 kb on + strand, within OKGIIK_01250at 274.660 kb on + strand, within OKGIIK_01250at 274.660 kb on + strand, within OKGIIK_01250at 274.661 kb on - strand, within OKGIIK_01250at 274.661 kb on - strand, within OKGIIK_01250at 274.661 kb on - strand, within OKGIIK_01250at 274.666 kb on + strand, within OKGIIK_01250at 274.667 kb on - strand, within OKGIIK_01250at 274.735 kb on + strandat 274.735 kb on + strandat 274.791 kb on + strandat 274.791 kb on + strandat 274.792 kb on - strandat 274.793 kb on + strandat 274.793 kb on + strandat 274.793 kb on + strandat 274.793 kb on + strandat 274.794 kb on - strandat 274.794 kb on - strandat 274.794 kb on - strandat 274.820 kb on + strandat 274.820 kb on + strandat 274.820 kb on + strandat 274.820 kb on + strandat 274.820 kb on + strandat 274.820 kb on + strandat 274.820 kb on + strandat 274.821 kb on - strandat 274.821 kb on - strandat 274.821 kb on - strandat 274.845 kb on + strandat 274.845 kb on + strandat 274.845 kb on + strandat 274.846 kb on - strandat 274.846 kb on - strandat 274.846 kb on - strandat 274.854 kb on - strandat 274.906 kb on + strandat 274.942 kb on + strandat 274.942 kb on + strandat 274.942 kb on + strandat 274.943 kb on - strandat 274.943 kb on - strandat 274.943 kb on - strandat 274.943 kb on - strandat 274.943 kb on - strandat 274.977 kb on - strandat 274.977 kb on - strandat 274.977 kb on - strandat 275.053 kb on + strandat 275.130 kb on + strand, within fixBat 275.130 kb on + strand, within fixBat 275.130 kb on + strand, within fixBat 275.130 kb on + strand, within fixBat 275.130 kb on + strand, within fixBat 275.130 kb on + strand, within fixBat 275.130 kb on + strand, within fixBat 275.130 kb on + strand, within fixBat 275.131 kb on + strand, within fixBat 275.131 kb on - strand, within fixBat 275.131 kb on - strand, within fixBat 275.131 kb on - strand, within fixBat 275.131 kb on - strand, within fixBat 275.515 kb on - strand, within fixBat 275.636 kb on + strand, within fixBat 275.636 kb on + strand, within fixBat 275.636 kb on + strand, within fixBat 275.636 kb on + strand, within fixBat 275.636 kb on + strand, within fixBat 275.636 kb on + strand, within fixBat 275.636 kb on + strand, within fixBat 275.636 kb on + strand, within fixBat 275.636 kb on + strand, within fixBat 275.636 kb on + strand, within fixBat 275.636 kb on + strand, within fixBat 275.636 kb on + strand, within fixBat 275.637 kb on - strand, within fixBat 275.637 kb on - strand, within fixBat 275.637 kb on - strand, within fixBat 275.637 kb on - strand, within fixBat 275.637 kb on - strand, within fixBat 275.637 kb on - strand, within fixBat 275.637 kb on - strand, within fixBat 275.637 kb on - strand, within fixBat 275.637 kb on - strand, within fixBat 275.637 kb on - strand, within fixBat 275.637 kb on - strand, within fixBat 275.795 kb on + strand, within fixBat 275.795 kb on + strand, within fixBat 275.795 kb on + strand, within fixBat 275.796 kb on - strand, within fixBat 275.796 kb on - strand, within fixBat 275.796 kb on - strand, within fixBat 275.796 kb on - strand, within fixBat 275.927 kb on - strandat 275.927 kb on - strandat 275.927 kb on - strandat 275.927 kb on - strandat 275.998 kb on + strandat 275.998 kb on + strandat 275.998 kb on + strandat 275.998 kb on + strandat 275.998 kb on + strandat 275.998 kb on + strandat 275.998 kb on + strandat 275.998 kb on + strandat 275.998 kb on + strandat 276.002 kb on + strandat 276.002 kb on + strandat 276.002 kb on + strandat 276.002 kb on + strandat 276.002 kb on + strandat 276.002 kb on + strandat 276.002 kb on + strandat 276.002 kb on + strandat 276.016 kb on + strandat 276.016 kb on + strandat 276.103 kb on + strand, within fixAat 276.725 kb on - strandat 276.725 kb on - strandat 276.725 kb on - strandat 276.725 kb on - strandat 276.743 kb on - strandat 276.743 kb on - strandat 276.815 kb on + strandat 276.815 kb on + strandat 276.815 kb on + strandat 276.816 kb on - strandat 276.816 kb on - strandat 276.835 kb on + strandat 276.836 kb on - strandat 276.836 kb on - strandat 276.898 kb on + strandat 276.899 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.25
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274,002 - OKGIIK_01250 0.41 +1.0
274,037 - OKGIIK_01250 0.43 -1.2
274,108 + OKGIIK_01250 0.48 -1.1
274,108 + OKGIIK_01250 0.48 +0.4
274,134 + OKGIIK_01250 0.50 +0.5
274,134 + OKGIIK_01250 0.50 -0.5
274,134 + OKGIIK_01250 0.50 +0.4
274,134 + OKGIIK_01250 0.50 -0.5
274,134 + OKGIIK_01250 0.50 +0.7
274,134 + OKGIIK_01250 0.50 +0.7
274,134 + OKGIIK_01250 0.50 +0.5
274,135 - OKGIIK_01250 0.50 -1.1
274,135 - OKGIIK_01250 0.50 -0.4
274,135 - OKGIIK_01250 0.50 -0.1
274,135 - OKGIIK_01250 0.50 -0.3
274,163 + OKGIIK_01250 0.52 -3.1
274,163 + OKGIIK_01250 0.52 -0.4
274,164 - OKGIIK_01250 0.52 -0.2
274,164 - OKGIIK_01250 0.52 +0.4
274,235 + OKGIIK_01250 0.57 +1.0
274,235 + OKGIIK_01250 0.57 -0.1
274,235 + OKGIIK_01250 0.57 +0.9
274,236 - OKGIIK_01250 0.57 +0.8
274,236 - OKGIIK_01250 0.57 +1.3
274,236 - OKGIIK_01250 0.57 -1.1
274,236 - OKGIIK_01250 0.57 -0.3
274,236 - OKGIIK_01250 0.57 -1.0
274,236 - OKGIIK_01250 0.57 -0.1
274,268 + OKGIIK_01250 0.60 +0.8
274,268 + OKGIIK_01250 0.60 -0.4
274,268 + OKGIIK_01250 0.60 -2.4
274,268 + OKGIIK_01250 0.60 -1.1
274,269 - OKGIIK_01250 0.60 +0.1
274,269 - OKGIIK_01250 0.60 -0.4
274,269 - OKGIIK_01250 0.60 -0.2
274,269 - OKGIIK_01250 0.60 +0.2
274,269 - OKGIIK_01250 0.60 -2.4
274,269 - OKGIIK_01250 0.60 -0.3
274,324 + OKGIIK_01250 0.64 -1.9
274,325 - OKGIIK_01250 0.64 -0.1
274,325 - OKGIIK_01250 0.64 -0.8
274,325 - OKGIIK_01250 0.64 -1.2
274,379 - OKGIIK_01250 0.67 -0.5
274,453 - OKGIIK_01250 0.73 -1.1
274,453 - OKGIIK_01250 0.73 -0.1
274,467 - OKGIIK_01250 0.74 +0.6
274,491 - OKGIIK_01250 0.75 +0.8
274,514 + OKGIIK_01250 0.77 -1.5
274,515 - OKGIIK_01250 0.77 -0.1
274,515 - OKGIIK_01250 0.77 +0.9
274,515 - OKGIIK_01250 0.77 +0.4
274,529 + OKGIIK_01250 0.78 -0.6
274,530 - OKGIIK_01250 0.78 -0.1
274,598 + OKGIIK_01250 0.83 -0.1
274,616 + OKGIIK_01250 0.84 -0.2
274,641 + OKGIIK_01250 0.86 -1.5
274,641 + OKGIIK_01250 0.86 -2.0
274,641 + OKGIIK_01250 0.86 +0.4
274,642 - OKGIIK_01250 0.86 +0.1
274,642 - OKGIIK_01250 0.86 -2.1
274,642 - OKGIIK_01250 0.86 +0.5
274,642 - OKGIIK_01250 0.86 -0.3
274,660 + OKGIIK_01250 0.87 +0.4
274,660 + OKGIIK_01250 0.87 -0.5
274,660 + OKGIIK_01250 0.87 +1.3
274,661 - OKGIIK_01250 0.87 +0.4
274,661 - OKGIIK_01250 0.87 -0.3
274,661 - OKGIIK_01250 0.87 +0.4
274,666 + OKGIIK_01250 0.88 -0.1
274,667 - OKGIIK_01250 0.88 +0.4
274,735 + -0.6
274,735 + +0.2
274,791 + +0.7
274,791 + +0.9
274,792 - -1.6
274,793 + -0.7
274,793 + +0.4
274,793 + +0.5
274,793 + +0.8
274,794 - -2.5
274,794 - +1.4
274,794 - -1.1
274,820 + -0.1
274,820 + +0.9
274,820 + +0.2
274,820 + +1.0
274,820 + -0.4
274,820 + -2.1
274,820 + -0.4
274,821 - -2.6
274,821 - +0.2
274,821 - +0.2
274,845 + +0.5
274,845 + -0.4
274,845 + -2.8
274,846 - -0.6
274,846 - -0.1
274,846 - -0.9
274,854 - -1.4
274,906 + -0.4
274,942 + +0.1
274,942 + -1.3
274,942 + -0.5
274,943 - -0.1
274,943 - +0.4
274,943 - -1.5
274,943 - +0.6
274,943 - -0.4
274,977 - +0.4
274,977 - -0.6
274,977 - -0.4
275,053 + -0.5
275,130 + fixB OKGIIK_01255 0.18 -0.6
275,130 + fixB OKGIIK_01255 0.18 -0.4
275,130 + fixB OKGIIK_01255 0.18 +0.1
275,130 + fixB OKGIIK_01255 0.18 -0.6
275,130 + fixB OKGIIK_01255 0.18 -0.9
275,130 + fixB OKGIIK_01255 0.18 -0.8
275,130 + fixB OKGIIK_01255 0.18 -2.6
275,130 + fixB OKGIIK_01255 0.18 -0.2
275,131 + fixB OKGIIK_01255 0.18 -1.1
275,131 - fixB OKGIIK_01255 0.18 -0.7
275,131 - fixB OKGIIK_01255 0.18 -2.1
275,131 - fixB OKGIIK_01255 0.18 +0.5
275,131 - fixB OKGIIK_01255 0.18 -0.4
275,515 - fixB OKGIIK_01255 0.59 -0.1
275,636 + fixB OKGIIK_01255 0.72 +0.1
275,636 + fixB OKGIIK_01255 0.72 -0.9
275,636 + fixB OKGIIK_01255 0.72 -1.5
275,636 + fixB OKGIIK_01255 0.72 -1.1
275,636 + fixB OKGIIK_01255 0.72 -0.3
275,636 + fixB OKGIIK_01255 0.72 -0.5
275,636 + fixB OKGIIK_01255 0.72 +0.0
275,636 + fixB OKGIIK_01255 0.72 -1.4
275,636 + fixB OKGIIK_01255 0.72 +0.9
275,636 + fixB OKGIIK_01255 0.72 +0.6
275,636 + fixB OKGIIK_01255 0.72 -1.2
275,636 + fixB OKGIIK_01255 0.72 -0.5
275,637 - fixB OKGIIK_01255 0.72 -1.1
275,637 - fixB OKGIIK_01255 0.72 -1.1
275,637 - fixB OKGIIK_01255 0.72 -0.1
275,637 - fixB OKGIIK_01255 0.72 -1.6
275,637 - fixB OKGIIK_01255 0.72 -0.1
275,637 - fixB OKGIIK_01255 0.72 +0.1
275,637 - fixB OKGIIK_01255 0.72 +0.9
275,637 - fixB OKGIIK_01255 0.72 -0.1
275,637 - fixB OKGIIK_01255 0.72 -0.6
275,637 - fixB OKGIIK_01255 0.72 -0.4
275,637 - fixB OKGIIK_01255 0.72 -0.9
275,795 + fixB OKGIIK_01255 0.89 -2.1
275,795 + fixB OKGIIK_01255 0.89 -0.5
275,795 + fixB OKGIIK_01255 0.89 -0.1
275,796 - fixB OKGIIK_01255 0.89 +1.2
275,796 - fixB OKGIIK_01255 0.89 -0.1
275,796 - fixB OKGIIK_01255 0.89 -1.1
275,796 - fixB OKGIIK_01255 0.89 -1.1
275,927 - -0.4
275,927 - +0.5
275,927 - +0.4
275,927 - -0.5
275,998 + +1.7
275,998 + -0.2
275,998 + -0.6
275,998 + -1.4
275,998 + +0.9
275,998 + +0.4
275,998 + -1.4
275,998 + +0.6
275,998 + -1.9
276,002 + -2.8
276,002 + -0.1
276,002 + -0.3
276,002 + -0.5
276,002 + +0.7
276,002 + +0.7
276,002 + -0.6
276,002 + -1.3
276,016 + +0.4
276,016 + +0.1
276,103 + fixA OKGIIK_01260 0.12 -0.1
276,725 - -1.1
276,725 - -0.8
276,725 - -0.9
276,725 - -0.9
276,743 - -0.1
276,743 - +1.3
276,815 + -0.6
276,815 + +0.3
276,815 + +0.1
276,816 - -0.8
276,816 - -0.4
276,835 + -0.1
276,836 - +0.3
276,836 - +1.5
276,898 + -0.1
276,899 - -3.3

Or see this region's nucleotide sequence