Experiment: R2A_PIPES pH 4.25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_01130 and ydcH are separated by 363 nucleotides ydcH and aF2118 are separated by 160 nucleotides
OKGIIK_01130: OKGIIK_01130 - DUF4398 domain-containing protein, at 242,407 to 243,048
_01130
OKGIIK_01135: ydcH - DUF465 domain-containing protein, at 243,412 to 243,639
ydcH
OKGIIK_01140: aF2118 - cystathionine beta-synthase, at 243,800 to 245,170
aF2118
Position (kb) 243
244 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 242.551 kb on + strand, within OKGIIK_01130 at 242.635 kb on + strand, within OKGIIK_01130 at 242.635 kb on + strand, within OKGIIK_01130 at 242.635 kb on + strand, within OKGIIK_01130 at 242.636 kb on - strand, within OKGIIK_01130 at 242.636 kb on - strand, within OKGIIK_01130 at 242.636 kb on - strand, within OKGIIK_01130 at 242.636 kb on - strand, within OKGIIK_01130 at 242.636 kb on - strand, within OKGIIK_01130 at 242.636 kb on - strand, within OKGIIK_01130 at 242.636 kb on - strand, within OKGIIK_01130 at 242.800 kb on + strand, within OKGIIK_01130 at 242.800 kb on + strand, within OKGIIK_01130 at 242.800 kb on + strand, within OKGIIK_01130 at 242.800 kb on + strand, within OKGIIK_01130 at 242.800 kb on + strand, within OKGIIK_01130 at 242.801 kb on - strand, within OKGIIK_01130 at 242.801 kb on - strand, within OKGIIK_01130 at 242.801 kb on - strand, within OKGIIK_01130 at 242.801 kb on - strand, within OKGIIK_01130 at 242.801 kb on - strand, within OKGIIK_01130 at 242.801 kb on - strand, within OKGIIK_01130 at 242.851 kb on + strand, within OKGIIK_01130 at 242.851 kb on + strand, within OKGIIK_01130 at 242.851 kb on + strand, within OKGIIK_01130 at 242.851 kb on + strand, within OKGIIK_01130 at 242.851 kb on + strand, within OKGIIK_01130 at 242.852 kb on - strand, within OKGIIK_01130 at 242.852 kb on - strand, within OKGIIK_01130 at 242.852 kb on - strand, within OKGIIK_01130 at 242.852 kb on - strand, within OKGIIK_01130 at 242.852 kb on - strand, within OKGIIK_01130 at 243.126 kb on + strand at 243.126 kb on + strand at 243.130 kb on + strand at 243.130 kb on + strand at 243.130 kb on + strand at 243.130 kb on + strand at 243.136 kb on + strand at 243.136 kb on + strand at 243.136 kb on + strand at 243.136 kb on + strand at 243.225 kb on + strand at 243.225 kb on + strand at 243.225 kb on + strand at 243.225 kb on + strand at 243.225 kb on + strand at 243.225 kb on + strand at 243.225 kb on + strand at 243.225 kb on + strand at 243.225 kb on + strand at 243.225 kb on + strand at 243.225 kb on + strand at 243.225 kb on + strand at 243.225 kb on + strand at 243.225 kb on + strand at 243.226 kb on - strand at 243.226 kb on - strand at 243.226 kb on - strand at 243.226 kb on - strand at 243.226 kb on - strand at 243.226 kb on - strand at 243.226 kb on - strand at 243.226 kb on - strand at 243.226 kb on - strand at 243.226 kb on - strand at 243.226 kb on - strand at 243.226 kb on - strand at 243.226 kb on - strand at 243.285 kb on + strand at 243.285 kb on + strand at 243.285 kb on + strand at 243.285 kb on + strand at 243.285 kb on + strand at 243.285 kb on + strand at 243.285 kb on + strand at 243.285 kb on + strand at 243.285 kb on + strand at 243.285 kb on + strand at 243.285 kb on + strand at 243.285 kb on + strand at 243.286 kb on - strand at 243.286 kb on - strand at 243.286 kb on - strand at 243.286 kb on - strand at 243.286 kb on - strand at 243.286 kb on - strand at 243.286 kb on - strand at 243.286 kb on - strand at 243.286 kb on - strand at 243.286 kb on - strand at 243.286 kb on - strand at 243.286 kb on - strand at 243.286 kb on - strand at 243.286 kb on - strand at 243.286 kb on - strand at 243.286 kb on - strand at 243.286 kb on - strand at 243.481 kb on + strand, within ydcH at 243.481 kb on + strand, within ydcH at 243.481 kb on + strand, within ydcH at 243.481 kb on + strand, within ydcH at 243.481 kb on + strand, within ydcH at 243.481 kb on + strand, within ydcH at 243.481 kb on + strand, within ydcH at 243.481 kb on + strand, within ydcH at 243.481 kb on + strand, within ydcH at 243.482 kb on - strand, within ydcH at 243.482 kb on - strand, within ydcH at 243.482 kb on - strand, within ydcH at 243.684 kb on + strand at 243.684 kb on + strand at 243.685 kb on - strand at 243.740 kb on + strand at 243.740 kb on + strand at 243.741 kb on - strand at 243.838 kb on + strand at 243.838 kb on + strand at 243.838 kb on + strand at 243.838 kb on + strand at 244.175 kb on + strand, within aF2118 at 244.175 kb on + strand, within aF2118 at 244.175 kb on + strand, within aF2118 at 244.175 kb on + strand, within aF2118 at 244.175 kb on + strand, within aF2118 at 244.176 kb on - strand, within aF2118 at 244.176 kb on - strand, within aF2118 at 244.176 kb on - strand, within aF2118 at 244.176 kb on - strand, within aF2118 at 244.176 kb on - strand, within aF2118 at 244.176 kb on - strand, within aF2118 at 244.176 kb on - strand, within aF2118 at 244.176 kb on - strand, within aF2118 at 244.178 kb on + strand, within aF2118 at 244.178 kb on + strand, within aF2118 at 244.178 kb on + strand, within aF2118 at 244.178 kb on + strand, within aF2118 at 244.178 kb on + strand, within aF2118 at 244.179 kb on - strand, within aF2118 at 244.179 kb on - strand, within aF2118 at 244.179 kb on - strand, within aF2118 at 244.179 kb on - strand, within aF2118 at 244.179 kb on - strand, within aF2118 at 244.179 kb on - strand, within aF2118 at 244.179 kb on - strand, within aF2118 at 244.179 kb on - strand, within aF2118 at 244.179 kb on - strand, within aF2118 at 244.179 kb on - strand, within aF2118 at 244.223 kb on + strand, within aF2118 at 244.223 kb on + strand, within aF2118 at 244.223 kb on + strand, within aF2118 at 244.224 kb on - strand, within aF2118 at 244.224 kb on - strand, within aF2118 at 244.224 kb on - strand, within aF2118 at 244.224 kb on - strand, within aF2118 at 244.439 kb on + strand, within aF2118 at 244.439 kb on + strand, within aF2118 at 244.439 kb on + strand, within aF2118 at 244.439 kb on + strand, within aF2118 at 244.439 kb on + strand, within aF2118 at 244.439 kb on + strand, within aF2118 at 244.439 kb on + strand, within aF2118 at 244.439 kb on + strand, within aF2118 at 244.439 kb on + strand, within aF2118 at 244.439 kb on + strand, within aF2118 at 244.439 kb on + strand, within aF2118 at 244.439 kb on + strand, within aF2118 at 244.439 kb on + strand, within aF2118 at 244.439 kb on + strand, within aF2118 at 244.439 kb on + strand, within aF2118 at 244.439 kb on + strand, within aF2118 at 244.440 kb on - strand, within aF2118 at 244.440 kb on - strand, within aF2118 at 244.440 kb on - strand, within aF2118 at 244.440 kb on - strand, within aF2118 at 244.440 kb on - strand, within aF2118 at 244.440 kb on - strand, within aF2118 at 244.440 kb on - strand, within aF2118 at 244.440 kb on - strand, within aF2118 at 244.440 kb on - strand, within aF2118 at 244.440 kb on - strand, within aF2118 at 244.440 kb on - strand, within aF2118 at 244.440 kb on - strand, within aF2118 at 244.440 kb on - strand, within aF2118 at 244.440 kb on - strand, within aF2118 at 244.440 kb on - strand, within aF2118 at 244.440 kb on - strand, within aF2118 at 244.440 kb on - strand, within aF2118 at 244.440 kb on - strand, within aF2118 at 244.440 kb on - strand, within aF2118 at 244.440 kb on - strand, within aF2118 at 244.440 kb on - strand, within aF2118 at 244.440 kb on - strand, within aF2118 at 244.440 kb on - strand, within aF2118 at 244.547 kb on + strand, within aF2118 at 244.547 kb on + strand, within aF2118 at 244.547 kb on + strand, within aF2118 at 244.547 kb on + strand, within aF2118 at 244.547 kb on + strand, within aF2118 at 244.547 kb on + strand, within aF2118 at 244.547 kb on + strand, within aF2118 at 244.547 kb on + strand, within aF2118 at 244.547 kb on + strand, within aF2118 at 244.548 kb on - strand, within aF2118 at 244.548 kb on - strand, within aF2118 at 244.548 kb on - strand, within aF2118 at 244.548 kb on - strand, within aF2118 at 244.548 kb on - strand, within aF2118 at 244.548 kb on - strand, within aF2118 at 244.548 kb on - strand, within aF2118 at 244.548 kb on - strand, within aF2118 at 244.548 kb on - strand, within aF2118 at 244.548 kb on - strand, within aF2118 at 244.548 kb on - strand, within aF2118
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.25 remove 242,551 + OKGIIK_01130 0.22 -1.8 242,635 + OKGIIK_01130 0.36 -1.6 242,635 + OKGIIK_01130 0.36 -0.5 242,635 + OKGIIK_01130 0.36 -1.8 242,636 - OKGIIK_01130 0.36 +0.3 242,636 - OKGIIK_01130 0.36 -0.1 242,636 - OKGIIK_01130 0.36 -0.2 242,636 - OKGIIK_01130 0.36 -1.1 242,636 - OKGIIK_01130 0.36 -1.5 242,636 - OKGIIK_01130 0.36 +1.4 242,636 - OKGIIK_01130 0.36 +0.9 242,800 + OKGIIK_01130 0.61 +0.1 242,800 + OKGIIK_01130 0.61 -0.1 242,800 + OKGIIK_01130 0.61 +0.0 242,800 + OKGIIK_01130 0.61 -3.1 242,800 + OKGIIK_01130 0.61 -0.2 242,801 - OKGIIK_01130 0.61 +1.5 242,801 - OKGIIK_01130 0.61 +0.4 242,801 - OKGIIK_01130 0.61 -1.6 242,801 - OKGIIK_01130 0.61 +0.3 242,801 - OKGIIK_01130 0.61 +0.9 242,801 - OKGIIK_01130 0.61 +0.6 242,851 + OKGIIK_01130 0.69 -0.4 242,851 + OKGIIK_01130 0.69 -0.9 242,851 + OKGIIK_01130 0.69 -0.5 242,851 + OKGIIK_01130 0.69 -0.2 242,851 + OKGIIK_01130 0.69 -0.3 242,852 - OKGIIK_01130 0.69 +0.0 242,852 - OKGIIK_01130 0.69 +0.7 242,852 - OKGIIK_01130 0.69 -0.6 242,852 - OKGIIK_01130 0.69 -0.9 242,852 - OKGIIK_01130 0.69 +0.6 243,126 + -0.9 243,126 + +0.5 243,130 + -0.3 243,130 + +1.4 243,130 + -0.9 243,130 + -0.7 243,136 + -0.3 243,136 + +1.4 243,136 + -0.8 243,136 + +0.9 243,225 + -0.9 243,225 + -0.1 243,225 + -1.2 243,225 + +0.9 243,225 + -0.1 243,225 + -0.1 243,225 + +0.7 243,225 + +0.9 243,225 + -0.3 243,225 + +0.9 243,225 + +0.0 243,225 + -0.3 243,225 + +2.9 243,225 + -0.8 243,226 - +1.9 243,226 - +0.1 243,226 - -0.9 243,226 - -0.9 243,226 - +0.3 243,226 - -2.5 243,226 - -0.2 243,226 - -0.9 243,226 - -0.5 243,226 - -1.4 243,226 - -0.2 243,226 - +2.2 243,226 - -0.7 243,285 + -0.3 243,285 + -1.4 243,285 + -0.1 243,285 + -2.2 243,285 + -1.1 243,285 + -0.9 243,285 + -2.6 243,285 + -0.6 243,285 + +0.7 243,285 + +0.2 243,285 + +0.9 243,285 + -0.3 243,286 - -1.4 243,286 - -1.1 243,286 - -1.1 243,286 - -0.3 243,286 - -0.8 243,286 - -2.1 243,286 - +0.9 243,286 - -0.6 243,286 - -2.1 243,286 - -0.1 243,286 - +0.2 243,286 - +0.4 243,286 - -0.8 243,286 - -1.4 243,286 - +0.7 243,286 - +0.7 243,286 - -0.1 243,481 + ydcH OKGIIK_01135 0.30 -1.1 243,481 + ydcH OKGIIK_01135 0.30 -1.3 243,481 + ydcH OKGIIK_01135 0.30 +0.4 243,481 + ydcH OKGIIK_01135 0.30 +0.3 243,481 + ydcH OKGIIK_01135 0.30 -0.3 243,481 + ydcH OKGIIK_01135 0.30 -1.4 243,481 + ydcH OKGIIK_01135 0.30 -2.5 243,481 + ydcH OKGIIK_01135 0.30 -2.2 243,481 + ydcH OKGIIK_01135 0.30 +0.3 243,482 - ydcH OKGIIK_01135 0.31 -1.3 243,482 - ydcH OKGIIK_01135 0.31 -0.3 243,482 - ydcH OKGIIK_01135 0.31 -1.5 243,684 + -0.3 243,684 + -1.2 243,685 - -0.3 243,740 + -0.8 243,740 + -1.2 243,741 - -2.0 243,838 + -0.3 243,838 + -0.4 243,838 + -1.1 243,838 + -1.4 244,175 + aF2118 OKGIIK_01140 0.27 -0.3 244,175 + aF2118 OKGIIK_01140 0.27 +0.2 244,175 + aF2118 OKGIIK_01140 0.27 -1.2 244,175 + aF2118 OKGIIK_01140 0.27 -0.6 244,175 + aF2118 OKGIIK_01140 0.27 -0.3 244,176 - aF2118 OKGIIK_01140 0.27 -1.1 244,176 - aF2118 OKGIIK_01140 0.27 -0.0 244,176 - aF2118 OKGIIK_01140 0.27 +0.6 244,176 - aF2118 OKGIIK_01140 0.27 +0.9 244,176 - aF2118 OKGIIK_01140 0.27 -0.3 244,176 - aF2118 OKGIIK_01140 0.27 -1.7 244,176 - aF2118 OKGIIK_01140 0.27 -0.5 244,176 - aF2118 OKGIIK_01140 0.27 +0.0 244,178 + aF2118 OKGIIK_01140 0.28 +0.0 244,178 + aF2118 OKGIIK_01140 0.28 -0.1 244,178 + aF2118 OKGIIK_01140 0.28 +0.7 244,178 + aF2118 OKGIIK_01140 0.28 +0.3 244,178 + aF2118 OKGIIK_01140 0.28 +0.6 244,179 - aF2118 OKGIIK_01140 0.28 +0.8 244,179 - aF2118 OKGIIK_01140 0.28 +0.5 244,179 - aF2118 OKGIIK_01140 0.28 +1.4 244,179 - aF2118 OKGIIK_01140 0.28 +1.1 244,179 - aF2118 OKGIIK_01140 0.28 -0.1 244,179 - aF2118 OKGIIK_01140 0.28 -0.1 244,179 - aF2118 OKGIIK_01140 0.28 +0.0 244,179 - aF2118 OKGIIK_01140 0.28 -1.6 244,179 - aF2118 OKGIIK_01140 0.28 +0.3 244,179 - aF2118 OKGIIK_01140 0.28 -0.4 244,223 + aF2118 OKGIIK_01140 0.31 -1.5 244,223 + aF2118 OKGIIK_01140 0.31 -1.2 244,223 + aF2118 OKGIIK_01140 0.31 -0.9 244,224 - aF2118 OKGIIK_01140 0.31 -2.6 244,224 - aF2118 OKGIIK_01140 0.31 -0.5 244,224 - aF2118 OKGIIK_01140 0.31 -0.4 244,224 - aF2118 OKGIIK_01140 0.31 -1.1 244,439 + aF2118 OKGIIK_01140 0.47 -1.1 244,439 + aF2118 OKGIIK_01140 0.47 -0.8 244,439 + aF2118 OKGIIK_01140 0.47 -0.8 244,439 + aF2118 OKGIIK_01140 0.47 -1.6 244,439 + aF2118 OKGIIK_01140 0.47 -2.9 244,439 + aF2118 OKGIIK_01140 0.47 -0.8 244,439 + aF2118 OKGIIK_01140 0.47 -0.8 244,439 + aF2118 OKGIIK_01140 0.47 +0.1 244,439 + aF2118 OKGIIK_01140 0.47 -1.1 244,439 + aF2118 OKGIIK_01140 0.47 +0.3 244,439 + aF2118 OKGIIK_01140 0.47 -0.1 244,439 + aF2118 OKGIIK_01140 0.47 +0.6 244,439 + aF2118 OKGIIK_01140 0.47 -0.5 244,439 + aF2118 OKGIIK_01140 0.47 -1.6 244,439 + aF2118 OKGIIK_01140 0.47 -0.6 244,439 + aF2118 OKGIIK_01140 0.47 -1.1 244,440 - aF2118 OKGIIK_01140 0.47 +0.7 244,440 - aF2118 OKGIIK_01140 0.47 +0.1 244,440 - aF2118 OKGIIK_01140 0.47 -0.1 244,440 - aF2118 OKGIIK_01140 0.47 -0.1 244,440 - aF2118 OKGIIK_01140 0.47 +0.2 244,440 - aF2118 OKGIIK_01140 0.47 -1.6 244,440 - aF2118 OKGIIK_01140 0.47 +0.6 244,440 - aF2118 OKGIIK_01140 0.47 +0.4 244,440 - aF2118 OKGIIK_01140 0.47 +0.4 244,440 - aF2118 OKGIIK_01140 0.47 +0.2 244,440 - aF2118 OKGIIK_01140 0.47 +0.9 244,440 - aF2118 OKGIIK_01140 0.47 +1.5 244,440 - aF2118 OKGIIK_01140 0.47 +1.7 244,440 - aF2118 OKGIIK_01140 0.47 -0.2 244,440 - aF2118 OKGIIK_01140 0.47 +3.1 244,440 - aF2118 OKGIIK_01140 0.47 -1.2 244,440 - aF2118 OKGIIK_01140 0.47 -1.4 244,440 - aF2118 OKGIIK_01140 0.47 -0.6 244,440 - aF2118 OKGIIK_01140 0.47 -0.4 244,440 - aF2118 OKGIIK_01140 0.47 -1.6 244,440 - aF2118 OKGIIK_01140 0.47 -0.3 244,440 - aF2118 OKGIIK_01140 0.47 +0.2 244,440 - aF2118 OKGIIK_01140 0.47 -0.1 244,547 + aF2118 OKGIIK_01140 0.54 -0.9 244,547 + aF2118 OKGIIK_01140 0.54 +2.9 244,547 + aF2118 OKGIIK_01140 0.54 +0.6 244,547 + aF2118 OKGIIK_01140 0.54 +1.2 244,547 + aF2118 OKGIIK_01140 0.54 +0.1 244,547 + aF2118 OKGIIK_01140 0.54 -0.6 244,547 + aF2118 OKGIIK_01140 0.54 +1.1 244,547 + aF2118 OKGIIK_01140 0.54 +0.2 244,547 + aF2118 OKGIIK_01140 0.54 -0.1 244,548 - aF2118 OKGIIK_01140 0.55 +0.7 244,548 - aF2118 OKGIIK_01140 0.55 -1.4 244,548 - aF2118 OKGIIK_01140 0.55 -1.1 244,548 - aF2118 OKGIIK_01140 0.55 -1.9 244,548 - aF2118 OKGIIK_01140 0.55 +0.2 244,548 - aF2118 OKGIIK_01140 0.55 +0.1 244,548 - aF2118 OKGIIK_01140 0.55 -0.6 244,548 - aF2118 OKGIIK_01140 0.55 +0.4 244,548 - aF2118 OKGIIK_01140 0.55 -4.6 244,548 - aF2118 OKGIIK_01140 0.55 +1.1 244,548 - aF2118 OKGIIK_01140 0.55 -0.2
Or see this region's nucleotide sequence