Experiment: R2A_PIPES pH 4.25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_01025 and OKGIIK_01030 are separated by 238 nucleotides OKGIIK_01030 and tpx are separated by 26 nucleotides tpx and OKGIIK_01040 are separated by 104 nucleotides OKGIIK_01040 and azu are separated by 89 nucleotides
OKGIIK_01025: OKGIIK_01025 - Nitric oxide reductase large subunit, at 223,149 to 225,431
_01025
OKGIIK_01030: OKGIIK_01030 - hypothetical protein, at 225,670 to 226,107
_01030
OKGIIK_01035: tpx - thiol peroxidase, at 226,134 to 226,634
tpx
OKGIIK_01040: OKGIIK_01040 - Preprotein translocase subunit TatC, at 226,739 to 227,155
_01040
OKGIIK_01045: azu - azurin, at 227,245 to 227,691
azu
Position (kb) 226
227 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 225.286 kb on + strand at 225.286 kb on + strand at 225.286 kb on + strand at 225.286 kb on + strand at 225.286 kb on + strand at 225.286 kb on + strand at 225.286 kb on + strand at 225.287 kb on - strand at 225.287 kb on - strand at 225.287 kb on - strand at 225.446 kb on + strand at 225.446 kb on + strand at 225.446 kb on + strand at 225.447 kb on - strand at 225.447 kb on - strand at 225.639 kb on + strand at 225.639 kb on + strand at 225.639 kb on + strand at 225.639 kb on + strand at 225.639 kb on + strand at 225.639 kb on + strand at 225.639 kb on + strand at 225.639 kb on + strand at 225.639 kb on + strand at 225.639 kb on + strand at 225.639 kb on + strand at 225.640 kb on - strand at 225.640 kb on - strand at 225.683 kb on - strand at 225.749 kb on + strand, within OKGIIK_01030 at 225.749 kb on + strand, within OKGIIK_01030 at 225.749 kb on + strand, within OKGIIK_01030 at 225.749 kb on + strand, within OKGIIK_01030 at 225.749 kb on + strand, within OKGIIK_01030 at 225.749 kb on + strand, within OKGIIK_01030 at 225.749 kb on + strand, within OKGIIK_01030 at 225.749 kb on + strand, within OKGIIK_01030 at 225.750 kb on - strand, within OKGIIK_01030 at 225.750 kb on - strand, within OKGIIK_01030 at 225.750 kb on - strand, within OKGIIK_01030 at 225.750 kb on - strand, within OKGIIK_01030 at 225.750 kb on - strand, within OKGIIK_01030 at 225.864 kb on + strand, within OKGIIK_01030 at 225.864 kb on + strand, within OKGIIK_01030 at 225.865 kb on - strand, within OKGIIK_01030 at 226.038 kb on + strand, within OKGIIK_01030 at 226.038 kb on + strand, within OKGIIK_01030 at 226.039 kb on - strand, within OKGIIK_01030 at 226.039 kb on - strand, within OKGIIK_01030 at 226.099 kb on + strand at 226.099 kb on + strand at 226.099 kb on + strand at 226.099 kb on + strand at 226.099 kb on + strand at 226.099 kb on + strand at 226.099 kb on + strand at 226.099 kb on + strand at 226.100 kb on - strand at 226.100 kb on - strand at 226.100 kb on - strand at 226.100 kb on - strand at 226.100 kb on - strand at 226.100 kb on - strand at 226.100 kb on - strand at 226.100 kb on - strand at 226.100 kb on - strand at 226.100 kb on - strand at 226.100 kb on - strand at 226.100 kb on - strand at 226.100 kb on - strand at 226.100 kb on - strand at 226.105 kb on + strand at 226.105 kb on + strand at 226.105 kb on + strand at 226.105 kb on + strand at 226.105 kb on + strand at 226.105 kb on + strand at 226.105 kb on + strand at 226.105 kb on + strand at 226.105 kb on + strand at 226.106 kb on - strand at 226.106 kb on - strand at 226.106 kb on - strand at 226.106 kb on - strand at 226.106 kb on - strand at 226.106 kb on - strand at 226.106 kb on - strand at 226.257 kb on + strand, within tpx at 226.257 kb on + strand, within tpx at 226.257 kb on + strand, within tpx at 226.258 kb on - strand, within tpx at 226.258 kb on - strand, within tpx at 226.258 kb on - strand, within tpx at 226.258 kb on - strand, within tpx at 226.258 kb on - strand, within tpx at 226.258 kb on - strand, within tpx at 226.361 kb on + strand, within tpx at 226.361 kb on + strand, within tpx at 226.361 kb on + strand, within tpx at 226.362 kb on - strand, within tpx at 226.362 kb on - strand, within tpx at 226.362 kb on - strand, within tpx at 226.362 kb on - strand, within tpx at 226.482 kb on + strand, within tpx at 226.483 kb on - strand, within tpx at 226.483 kb on - strand, within tpx at 226.483 kb on - strand, within tpx at 226.605 kb on + strand at 226.605 kb on + strand at 226.606 kb on - strand at 226.606 kb on - strand at 226.606 kb on - strand at 226.606 kb on - strand at 226.606 kb on - strand at 226.723 kb on + strand at 226.723 kb on + strand at 226.723 kb on + strand at 226.723 kb on + strand at 226.723 kb on + strand at 226.723 kb on + strand at 226.723 kb on + strand at 226.723 kb on + strand at 226.723 kb on + strand at 226.723 kb on + strand at 226.723 kb on + strand at 226.723 kb on + strand at 226.723 kb on + strand at 226.723 kb on + strand at 226.723 kb on + strand at 226.724 kb on - strand at 226.724 kb on - strand at 226.724 kb on - strand at 226.724 kb on - strand at 226.724 kb on - strand at 226.724 kb on - strand at 226.724 kb on - strand at 226.724 kb on - strand at 226.834 kb on - strand, within OKGIIK_01040 at 226.965 kb on + strand, within OKGIIK_01040 at 226.965 kb on + strand, within OKGIIK_01040 at 226.966 kb on - strand, within OKGIIK_01040 at 226.966 kb on - strand, within OKGIIK_01040 at 227.088 kb on + strand, within OKGIIK_01040 at 227.088 kb on + strand, within OKGIIK_01040 at 227.235 kb on + strand at 227.235 kb on + strand at 227.246 kb on + strand at 227.246 kb on + strand at 227.246 kb on + strand at 227.246 kb on + strand at 227.246 kb on + strand at 227.246 kb on + strand at 227.246 kb on + strand at 227.246 kb on + strand at 227.246 kb on + strand at 227.246 kb on + strand at 227.246 kb on + strand at 227.306 kb on + strand, within azu at 227.306 kb on + strand, within azu at 227.306 kb on + strand, within azu at 227.306 kb on + strand, within azu at 227.306 kb on + strand, within azu at 227.306 kb on + strand, within azu at 227.306 kb on + strand, within azu at 227.306 kb on + strand, within azu at 227.306 kb on + strand, within azu at 227.306 kb on + strand, within azu at 227.307 kb on - strand, within azu at 227.307 kb on - strand, within azu at 227.312 kb on + strand, within azu at 227.312 kb on + strand, within azu at 227.312 kb on + strand, within azu at 227.312 kb on + strand, within azu at 227.312 kb on + strand, within azu at 227.312 kb on + strand, within azu at 227.312 kb on + strand, within azu at 227.312 kb on + strand, within azu at 227.312 kb on + strand, within azu at 227.312 kb on + strand, within azu at 227.312 kb on + strand, within azu at 227.312 kb on + strand, within azu at 227.312 kb on + strand, within azu at 227.312 kb on + strand, within azu at 227.313 kb on - strand, within azu at 227.313 kb on - strand, within azu at 227.420 kb on + strand, within azu at 227.420 kb on + strand, within azu at 227.420 kb on + strand, within azu at 227.420 kb on + strand, within azu at 227.420 kb on + strand, within azu at 227.420 kb on + strand, within azu at 227.420 kb on + strand, within azu at 227.420 kb on + strand, within azu at 227.420 kb on + strand, within azu at 227.421 kb on - strand, within azu at 227.421 kb on - strand, within azu at 227.421 kb on - strand, within azu at 227.421 kb on - strand, within azu at 227.421 kb on - strand, within azu at 227.421 kb on - strand, within azu at 227.421 kb on - strand, within azu at 227.421 kb on - strand, within azu at 227.421 kb on - strand, within azu at 227.421 kb on - strand, within azu
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.25 remove 225,286 + +0.5 225,286 + -0.6 225,286 + -0.9 225,286 + -1.5 225,286 + -0.1 225,286 + -1.1 225,286 + -0.8 225,287 - +0.6 225,287 - -0.0 225,287 - -1.1 225,446 + -0.5 225,446 + -0.4 225,446 + +1.5 225,447 - +1.4 225,447 - +0.7 225,639 + -1.9 225,639 + +0.6 225,639 + +0.9 225,639 + -0.6 225,639 + +1.1 225,639 + +0.5 225,639 + -1.9 225,639 + +0.7 225,639 + -1.1 225,639 + -2.1 225,639 + +0.7 225,640 - +0.5 225,640 - +0.5 225,683 - -0.4 225,749 + OKGIIK_01030 0.18 -0.9 225,749 + OKGIIK_01030 0.18 +0.5 225,749 + OKGIIK_01030 0.18 -0.4 225,749 + OKGIIK_01030 0.18 +0.3 225,749 + OKGIIK_01030 0.18 +2.4 225,749 + OKGIIK_01030 0.18 +0.5 225,749 + OKGIIK_01030 0.18 -1.2 225,749 + OKGIIK_01030 0.18 +0.5 225,750 - OKGIIK_01030 0.18 +0.9 225,750 - OKGIIK_01030 0.18 +0.6 225,750 - OKGIIK_01030 0.18 +0.5 225,750 - OKGIIK_01030 0.18 -0.1 225,750 - OKGIIK_01030 0.18 +1.3 225,864 + OKGIIK_01030 0.44 -0.5 225,864 + OKGIIK_01030 0.44 +0.5 225,865 - OKGIIK_01030 0.45 -0.4 226,038 + OKGIIK_01030 0.84 -0.9 226,038 + OKGIIK_01030 0.84 -1.4 226,039 - OKGIIK_01030 0.84 +1.2 226,039 - OKGIIK_01030 0.84 +1.1 226,099 + -0.1 226,099 + +0.7 226,099 + +0.9 226,099 + -0.3 226,099 + +0.4 226,099 + -1.6 226,099 + -2.1 226,099 + +0.5 226,100 - -1.6 226,100 - -1.6 226,100 - -2.6 226,100 - -3.2 226,100 - -1.4 226,100 - -0.4 226,100 - +0.9 226,100 - +2.3 226,100 - -2.1 226,100 - -0.6 226,100 - +0.1 226,100 - +0.6 226,100 - +0.4 226,100 - +0.5 226,105 + +0.3 226,105 + +1.3 226,105 + +0.3 226,105 + -0.2 226,105 + +0.0 226,105 + +0.9 226,105 + +0.6 226,105 + -1.3 226,105 + +0.4 226,106 - -0.7 226,106 - -0.5 226,106 - -0.8 226,106 - +0.1 226,106 - +0.5 226,106 - -1.2 226,106 - +0.9 226,257 + tpx OKGIIK_01035 0.25 -0.1 226,257 + tpx OKGIIK_01035 0.25 -2.6 226,257 + tpx OKGIIK_01035 0.25 +1.4 226,258 - tpx OKGIIK_01035 0.25 -0.1 226,258 - tpx OKGIIK_01035 0.25 -1.2 226,258 - tpx OKGIIK_01035 0.25 +0.4 226,258 - tpx OKGIIK_01035 0.25 -0.2 226,258 - tpx OKGIIK_01035 0.25 -1.2 226,258 - tpx OKGIIK_01035 0.25 -2.6 226,361 + tpx OKGIIK_01035 0.45 -2.1 226,361 + tpx OKGIIK_01035 0.45 +0.0 226,361 + tpx OKGIIK_01035 0.45 -0.4 226,362 - tpx OKGIIK_01035 0.46 -1.1 226,362 - tpx OKGIIK_01035 0.46 -0.7 226,362 - tpx OKGIIK_01035 0.46 +0.5 226,362 - tpx OKGIIK_01035 0.46 -1.1 226,482 + tpx OKGIIK_01035 0.69 -0.9 226,483 - tpx OKGIIK_01035 0.70 -0.5 226,483 - tpx OKGIIK_01035 0.70 +0.7 226,483 - tpx OKGIIK_01035 0.70 -0.5 226,605 + -0.3 226,605 + +1.4 226,606 - +0.5 226,606 - +1.8 226,606 - -0.4 226,606 - -1.5 226,606 - -1.2 226,723 + -2.1 226,723 + -0.2 226,723 + -0.7 226,723 + -0.6 226,723 + -0.6 226,723 + +0.0 226,723 + -0.5 226,723 + -1.4 226,723 + -0.1 226,723 + -1.5 226,723 + -1.1 226,723 + +0.2 226,723 + +0.3 226,723 + -0.9 226,723 + +1.3 226,724 - +0.4 226,724 - -1.2 226,724 - +0.0 226,724 - -0.4 226,724 - +1.0 226,724 - +0.3 226,724 - -0.1 226,724 - +0.5 226,834 - OKGIIK_01040 0.23 -0.3 226,965 + OKGIIK_01040 0.54 -1.6 226,965 + OKGIIK_01040 0.54 -0.1 226,966 - OKGIIK_01040 0.54 -0.7 226,966 - OKGIIK_01040 0.54 +1.7 227,088 + OKGIIK_01040 0.84 +1.3 227,088 + OKGIIK_01040 0.84 -2.2 227,235 + -0.1 227,235 + -0.5 227,246 + +0.2 227,246 + +0.9 227,246 + -1.9 227,246 + -1.1 227,246 + -0.8 227,246 + -0.3 227,246 + -0.1 227,246 + -1.4 227,246 + -0.4 227,246 + +0.2 227,246 + -1.3 227,306 + azu OKGIIK_01045 0.14 -0.1 227,306 + azu OKGIIK_01045 0.14 -0.4 227,306 + azu OKGIIK_01045 0.14 +0.2 227,306 + azu OKGIIK_01045 0.14 -0.7 227,306 + azu OKGIIK_01045 0.14 -0.2 227,306 + azu OKGIIK_01045 0.14 -1.1 227,306 + azu OKGIIK_01045 0.14 +0.3 227,306 + azu OKGIIK_01045 0.14 -0.1 227,306 + azu OKGIIK_01045 0.14 +0.2 227,306 + azu OKGIIK_01045 0.14 +0.6 227,307 - azu OKGIIK_01045 0.14 +0.3 227,307 - azu OKGIIK_01045 0.14 +0.6 227,312 + azu OKGIIK_01045 0.15 +0.4 227,312 + azu OKGIIK_01045 0.15 -0.4 227,312 + azu OKGIIK_01045 0.15 -1.1 227,312 + azu OKGIIK_01045 0.15 +0.2 227,312 + azu OKGIIK_01045 0.15 -1.1 227,312 + azu OKGIIK_01045 0.15 -0.2 227,312 + azu OKGIIK_01045 0.15 +1.8 227,312 + azu OKGIIK_01045 0.15 -1.1 227,312 + azu OKGIIK_01045 0.15 +0.5 227,312 + azu OKGIIK_01045 0.15 -1.1 227,312 + azu OKGIIK_01045 0.15 -0.6 227,312 + azu OKGIIK_01045 0.15 +0.2 227,312 + azu OKGIIK_01045 0.15 +0.5 227,312 + azu OKGIIK_01045 0.15 -0.1 227,313 - azu OKGIIK_01045 0.15 -0.0 227,313 - azu OKGIIK_01045 0.15 -0.8 227,420 + azu OKGIIK_01045 0.39 +1.5 227,420 + azu OKGIIK_01045 0.39 +0.9 227,420 + azu OKGIIK_01045 0.39 +1.4 227,420 + azu OKGIIK_01045 0.39 -1.6 227,420 + azu OKGIIK_01045 0.39 +0.9 227,420 + azu OKGIIK_01045 0.39 +0.5 227,420 + azu OKGIIK_01045 0.39 +1.7 227,420 + azu OKGIIK_01045 0.39 +0.1 227,420 + azu OKGIIK_01045 0.39 +0.2 227,421 - azu OKGIIK_01045 0.39 -0.8 227,421 - azu OKGIIK_01045 0.39 -0.2 227,421 - azu OKGIIK_01045 0.39 -1.1 227,421 - azu OKGIIK_01045 0.39 +0.6 227,421 - azu OKGIIK_01045 0.39 +0.7 227,421 - azu OKGIIK_01045 0.39 +1.2 227,421 - azu OKGIIK_01045 0.39 -0.1 227,421 - azu OKGIIK_01045 0.39 -0.1 227,421 - azu OKGIIK_01045 0.39 -1.8 227,421 - azu OKGIIK_01045 0.39 -1.3
Or see this region's nucleotide sequence