Experiment: R2A_PIPES pH 4.25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_00850 and OKGIIK_00855 are separated by 26 nucleotides OKGIIK_00855 and OKGIIK_00860 are separated by 48 nucleotides OKGIIK_00860 and OKGIIK_00865 overlap by 4 nucleotides
OKGIIK_00850: OKGIIK_00850 - PepSY domain-containing protein, at 187,949 to 188,221
_00850
OKGIIK_00855: OKGIIK_00855 - Cytochrome B, at 188,248 to 188,799
_00855
OKGIIK_00860: OKGIIK_00860 - DNA-binding response regulator, at 188,848 to 189,522
_00860
OKGIIK_00865: OKGIIK_00865 - Sensor protein QseC, at 189,519 to 190,898
_00865
Position (kb) 188
189
190 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 187.848 kb on - strand at 187.848 kb on - strand at 187.880 kb on + strand at 187.881 kb on - strand at 187.881 kb on - strand at 187.881 kb on - strand at 187.881 kb on - strand at 187.881 kb on - strand at 187.881 kb on - strand at 187.881 kb on - strand at 187.881 kb on - strand at 187.881 kb on - strand at 187.881 kb on - strand at 187.881 kb on - strand at 187.891 kb on + strand at 187.891 kb on + strand at 187.891 kb on + strand at 187.891 kb on + strand at 187.891 kb on + strand at 187.891 kb on + strand at 187.891 kb on + strand at 187.891 kb on + strand at 187.892 kb on - strand at 187.892 kb on - strand at 187.892 kb on - strand at 187.892 kb on - strand at 187.892 kb on - strand at 187.892 kb on - strand at 187.892 kb on - strand at 188.094 kb on - strand, within OKGIIK_00850 at 188.129 kb on + strand, within OKGIIK_00850 at 188.129 kb on + strand, within OKGIIK_00850 at 188.129 kb on + strand, within OKGIIK_00850 at 188.129 kb on + strand, within OKGIIK_00850 at 188.129 kb on + strand, within OKGIIK_00850 at 188.130 kb on - strand, within OKGIIK_00850 at 188.130 kb on - strand, within OKGIIK_00850 at 188.130 kb on - strand, within OKGIIK_00850 at 188.138 kb on + strand, within OKGIIK_00850 at 188.138 kb on + strand, within OKGIIK_00850 at 188.138 kb on + strand, within OKGIIK_00850 at 188.138 kb on + strand, within OKGIIK_00850 at 188.138 kb on + strand, within OKGIIK_00850 at 188.138 kb on + strand, within OKGIIK_00850 at 188.138 kb on + strand, within OKGIIK_00850 at 188.138 kb on + strand, within OKGIIK_00850 at 188.139 kb on - strand, within OKGIIK_00850 at 188.139 kb on - strand, within OKGIIK_00850 at 188.139 kb on - strand, within OKGIIK_00850 at 188.139 kb on - strand, within OKGIIK_00850 at 188.139 kb on - strand, within OKGIIK_00850 at 188.174 kb on + strand, within OKGIIK_00850 at 188.174 kb on + strand, within OKGIIK_00850 at 188.174 kb on + strand, within OKGIIK_00850 at 188.174 kb on + strand, within OKGIIK_00850 at 188.174 kb on + strand, within OKGIIK_00850 at 188.174 kb on + strand, within OKGIIK_00850 at 188.174 kb on + strand, within OKGIIK_00850 at 188.174 kb on + strand, within OKGIIK_00850 at 188.174 kb on + strand, within OKGIIK_00850 at 188.174 kb on + strand, within OKGIIK_00850 at 188.174 kb on + strand, within OKGIIK_00850 at 188.174 kb on + strand, within OKGIIK_00850 at 188.174 kb on + strand, within OKGIIK_00850 at 188.175 kb on - strand, within OKGIIK_00850 at 188.175 kb on - strand, within OKGIIK_00850 at 188.175 kb on - strand, within OKGIIK_00850 at 188.175 kb on - strand, within OKGIIK_00850 at 188.175 kb on - strand, within OKGIIK_00850 at 188.175 kb on - strand, within OKGIIK_00850 at 188.175 kb on - strand, within OKGIIK_00850 at 188.175 kb on - strand, within OKGIIK_00850 at 188.175 kb on - strand, within OKGIIK_00850 at 188.175 kb on - strand, within OKGIIK_00850 at 188.175 kb on - strand, within OKGIIK_00850 at 188.175 kb on - strand, within OKGIIK_00850 at 188.175 kb on - strand, within OKGIIK_00850 at 188.175 kb on - strand, within OKGIIK_00850 at 188.175 kb on - strand, within OKGIIK_00850 at 188.175 kb on - strand, within OKGIIK_00850 at 188.175 kb on - strand, within OKGIIK_00850 at 188.247 kb on + strand at 188.247 kb on + strand at 188.247 kb on + strand at 188.247 kb on + strand at 188.247 kb on + strand at 188.247 kb on + strand at 188.247 kb on + strand at 188.248 kb on - strand at 188.248 kb on - strand at 188.248 kb on - strand at 188.248 kb on - strand at 188.248 kb on - strand at 188.248 kb on - strand at 188.248 kb on - strand at 188.248 kb on - strand at 188.248 kb on - strand at 188.248 kb on - strand at 188.282 kb on + strand at 188.283 kb on - strand at 188.283 kb on - strand at 188.283 kb on - strand at 188.283 kb on - strand at 188.283 kb on - strand at 188.368 kb on + strand, within OKGIIK_00855 at 188.369 kb on - strand, within OKGIIK_00855 at 188.473 kb on + strand, within OKGIIK_00855 at 188.473 kb on + strand, within OKGIIK_00855 at 188.473 kb on + strand, within OKGIIK_00855 at 188.473 kb on + strand, within OKGIIK_00855 at 188.474 kb on - strand, within OKGIIK_00855 at 188.474 kb on - strand, within OKGIIK_00855 at 188.474 kb on - strand, within OKGIIK_00855 at 188.653 kb on + strand, within OKGIIK_00855 at 188.713 kb on + strand, within OKGIIK_00855 at 188.713 kb on + strand, within OKGIIK_00855 at 188.714 kb on - strand, within OKGIIK_00855 at 188.835 kb on + strand at 188.836 kb on + strand at 188.836 kb on + strand at 188.836 kb on + strand at 188.836 kb on + strand at 188.836 kb on + strand at 188.837 kb on - strand at 188.837 kb on - strand at 188.837 kb on - strand at 188.837 kb on - strand at 188.837 kb on - strand at 188.837 kb on - strand at 188.837 kb on - strand at 188.862 kb on - strand at 188.921 kb on - strand, within OKGIIK_00860 at 188.921 kb on - strand, within OKGIIK_00860 at 188.980 kb on + strand, within OKGIIK_00860 at 188.981 kb on - strand, within OKGIIK_00860 at 188.981 kb on - strand, within OKGIIK_00860 at 189.139 kb on + strand, within OKGIIK_00860 at 189.139 kb on + strand, within OKGIIK_00860 at 189.139 kb on + strand, within OKGIIK_00860 at 189.139 kb on + strand, within OKGIIK_00860 at 189.139 kb on + strand, within OKGIIK_00860 at 189.139 kb on + strand, within OKGIIK_00860 at 189.139 kb on + strand, within OKGIIK_00860 at 189.139 kb on + strand, within OKGIIK_00860 at 189.139 kb on + strand, within OKGIIK_00860 at 189.139 kb on + strand, within OKGIIK_00860 at 189.139 kb on + strand, within OKGIIK_00860 at 189.139 kb on + strand, within OKGIIK_00860 at 189.140 kb on - strand, within OKGIIK_00860 at 189.140 kb on - strand, within OKGIIK_00860 at 189.140 kb on - strand, within OKGIIK_00860 at 189.140 kb on - strand, within OKGIIK_00860 at 189.140 kb on - strand, within OKGIIK_00860 at 189.140 kb on - strand, within OKGIIK_00860 at 189.140 kb on - strand, within OKGIIK_00860 at 189.140 kb on - strand, within OKGIIK_00860 at 189.310 kb on + strand, within OKGIIK_00860 at 189.311 kb on - strand, within OKGIIK_00860 at 189.352 kb on + strand, within OKGIIK_00860 at 189.352 kb on + strand, within OKGIIK_00860 at 189.352 kb on + strand, within OKGIIK_00860 at 189.352 kb on + strand, within OKGIIK_00860 at 189.352 kb on + strand, within OKGIIK_00860 at 189.352 kb on + strand, within OKGIIK_00860 at 189.353 kb on - strand, within OKGIIK_00860 at 189.353 kb on - strand, within OKGIIK_00860 at 189.382 kb on + strand, within OKGIIK_00860 at 189.382 kb on + strand, within OKGIIK_00860 at 189.382 kb on + strand, within OKGIIK_00860 at 189.382 kb on + strand, within OKGIIK_00860 at 189.383 kb on - strand, within OKGIIK_00860 at 189.383 kb on - strand, within OKGIIK_00860 at 189.383 kb on - strand, within OKGIIK_00860 at 189.383 kb on - strand, within OKGIIK_00860 at 189.383 kb on - strand, within OKGIIK_00860 at 189.383 kb on - strand, within OKGIIK_00860 at 189.383 kb on - strand, within OKGIIK_00860 at 189.383 kb on - strand, within OKGIIK_00860 at 189.559 kb on + strand at 189.870 kb on + strand, within OKGIIK_00865 at 189.871 kb on - strand, within OKGIIK_00865 at 189.871 kb on - strand, within OKGIIK_00865 at 189.892 kb on + strand, within OKGIIK_00865 at 189.921 kb on + strand, within OKGIIK_00865 at 189.921 kb on + strand, within OKGIIK_00865 at 189.921 kb on + strand, within OKGIIK_00865 at 189.921 kb on + strand, within OKGIIK_00865 at 189.922 kb on - strand, within OKGIIK_00865 at 189.922 kb on - strand, within OKGIIK_00865 at 189.922 kb on - strand, within OKGIIK_00865 at 189.922 kb on - strand, within OKGIIK_00865 at 189.922 kb on - strand, within OKGIIK_00865
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.25 remove 187,848 - -0.8 187,848 - -0.3 187,880 + -0.9 187,881 - -1.2 187,881 - -1.9 187,881 - -1.2 187,881 - +0.7 187,881 - +1.0 187,881 - +0.3 187,881 - +1.5 187,881 - -0.5 187,881 - +0.1 187,881 - -0.3 187,881 - -0.3 187,891 + -1.0 187,891 + +0.4 187,891 + +0.6 187,891 + -1.0 187,891 + -0.6 187,891 + -0.5 187,891 + -0.5 187,891 + -1.4 187,892 - -1.9 187,892 - +0.7 187,892 - -0.0 187,892 - +0.1 187,892 - +1.0 187,892 - -0.3 187,892 - -0.9 188,094 - OKGIIK_00850 0.53 -0.4 188,129 + OKGIIK_00850 0.66 -0.5 188,129 + OKGIIK_00850 0.66 -0.9 188,129 + OKGIIK_00850 0.66 +0.7 188,129 + OKGIIK_00850 0.66 -0.6 188,129 + OKGIIK_00850 0.66 -0.4 188,130 - OKGIIK_00850 0.66 -0.8 188,130 - OKGIIK_00850 0.66 +1.0 188,130 - OKGIIK_00850 0.66 -0.4 188,138 + OKGIIK_00850 0.69 -1.0 188,138 + OKGIIK_00850 0.69 -0.0 188,138 + OKGIIK_00850 0.69 -1.6 188,138 + OKGIIK_00850 0.69 -1.8 188,138 + OKGIIK_00850 0.69 +0.7 188,138 + OKGIIK_00850 0.69 -0.6 188,138 + OKGIIK_00850 0.69 +0.2 188,138 + OKGIIK_00850 0.69 +1.4 188,139 - OKGIIK_00850 0.70 +1.4 188,139 - OKGIIK_00850 0.70 +0.0 188,139 - OKGIIK_00850 0.70 +1.3 188,139 - OKGIIK_00850 0.70 -0.6 188,139 - OKGIIK_00850 0.70 -0.6 188,174 + OKGIIK_00850 0.82 +1.0 188,174 + OKGIIK_00850 0.82 -0.6 188,174 + OKGIIK_00850 0.82 -0.4 188,174 + OKGIIK_00850 0.82 +0.8 188,174 + OKGIIK_00850 0.82 -0.5 188,174 + OKGIIK_00850 0.82 -0.2 188,174 + OKGIIK_00850 0.82 +0.1 188,174 + OKGIIK_00850 0.82 +0.7 188,174 + OKGIIK_00850 0.82 -0.6 188,174 + OKGIIK_00850 0.82 -2.9 188,174 + OKGIIK_00850 0.82 +2.8 188,174 + OKGIIK_00850 0.82 +1.3 188,174 + OKGIIK_00850 0.82 +0.6 188,175 - OKGIIK_00850 0.83 +1.8 188,175 - OKGIIK_00850 0.83 +0.2 188,175 - OKGIIK_00850 0.83 +0.5 188,175 - OKGIIK_00850 0.83 -3.3 188,175 - OKGIIK_00850 0.83 -0.2 188,175 - OKGIIK_00850 0.83 -0.4 188,175 - OKGIIK_00850 0.83 +0.6 188,175 - OKGIIK_00850 0.83 -0.0 188,175 - OKGIIK_00850 0.83 +0.1 188,175 - OKGIIK_00850 0.83 -0.3 188,175 - OKGIIK_00850 0.83 -0.7 188,175 - OKGIIK_00850 0.83 -0.4 188,175 - OKGIIK_00850 0.83 -1.4 188,175 - OKGIIK_00850 0.83 +0.2 188,175 - OKGIIK_00850 0.83 +2.0 188,175 - OKGIIK_00850 0.83 -0.5 188,175 - OKGIIK_00850 0.83 -0.6 188,247 + +1.0 188,247 + -0.5 188,247 + +2.0 188,247 + +1.0 188,247 + +1.0 188,247 + -1.6 188,247 + -1.4 188,248 - +2.0 188,248 - -2.0 188,248 - +2.0 188,248 - -0.9 188,248 - -0.6 188,248 - -2.2 188,248 - -3.0 188,248 - -0.2 188,248 - -0.5 188,248 - -2.2 188,282 + -1.4 188,283 - -1.6 188,283 - -0.6 188,283 - +1.1 188,283 - -0.5 188,283 - -2.0 188,368 + OKGIIK_00855 0.22 +0.8 188,369 - OKGIIK_00855 0.22 +1.8 188,473 + OKGIIK_00855 0.41 +1.0 188,473 + OKGIIK_00855 0.41 +0.2 188,473 + OKGIIK_00855 0.41 +1.0 188,473 + OKGIIK_00855 0.41 +0.6 188,474 - OKGIIK_00855 0.41 +0.2 188,474 - OKGIIK_00855 0.41 -1.6 188,474 - OKGIIK_00855 0.41 +0.7 188,653 + OKGIIK_00855 0.73 +0.6 188,713 + OKGIIK_00855 0.84 -0.9 188,713 + OKGIIK_00855 0.84 +0.3 188,714 - OKGIIK_00855 0.84 -0.4 188,835 + +1.5 188,836 + +0.3 188,836 + +1.4 188,836 + +0.6 188,836 + +1.5 188,836 + +0.6 188,837 - -0.6 188,837 - +0.7 188,837 - +0.6 188,837 - +0.1 188,837 - +0.1 188,837 - +1.0 188,837 - -0.6 188,862 - +0.7 188,921 - OKGIIK_00860 0.11 +0.5 188,921 - OKGIIK_00860 0.11 +0.5 188,980 + OKGIIK_00860 0.20 -0.5 188,981 - OKGIIK_00860 0.20 -0.2 188,981 - OKGIIK_00860 0.20 -0.2 189,139 + OKGIIK_00860 0.43 +2.0 189,139 + OKGIIK_00860 0.43 -1.4 189,139 + OKGIIK_00860 0.43 +1.2 189,139 + OKGIIK_00860 0.43 -0.5 189,139 + OKGIIK_00860 0.43 -1.8 189,139 + OKGIIK_00860 0.43 +0.2 189,139 + OKGIIK_00860 0.43 +0.6 189,139 + OKGIIK_00860 0.43 -1.8 189,139 + OKGIIK_00860 0.43 +1.6 189,139 + OKGIIK_00860 0.43 -1.0 189,139 + OKGIIK_00860 0.43 +0.7 189,139 + OKGIIK_00860 0.43 +3.1 189,140 - OKGIIK_00860 0.43 -1.4 189,140 - OKGIIK_00860 0.43 -0.0 189,140 - OKGIIK_00860 0.43 +0.2 189,140 - OKGIIK_00860 0.43 +0.3 189,140 - OKGIIK_00860 0.43 -1.0 189,140 - OKGIIK_00860 0.43 +2.5 189,140 - OKGIIK_00860 0.43 -1.6 189,140 - OKGIIK_00860 0.43 -0.5 189,310 + OKGIIK_00860 0.68 +1.3 189,311 - OKGIIK_00860 0.69 +2.0 189,352 + OKGIIK_00860 0.75 -1.0 189,352 + OKGIIK_00860 0.75 +0.4 189,352 + OKGIIK_00860 0.75 +1.0 189,352 + OKGIIK_00860 0.75 +1.3 189,352 + OKGIIK_00860 0.75 -1.0 189,352 + OKGIIK_00860 0.75 +2.5 189,353 - OKGIIK_00860 0.75 -0.6 189,353 - OKGIIK_00860 0.75 +0.4 189,382 + OKGIIK_00860 0.79 -0.0 189,382 + OKGIIK_00860 0.79 +0.1 189,382 + OKGIIK_00860 0.79 -1.4 189,382 + OKGIIK_00860 0.79 +0.4 189,383 - OKGIIK_00860 0.79 -1.4 189,383 - OKGIIK_00860 0.79 -1.4 189,383 - OKGIIK_00860 0.79 -0.8 189,383 - OKGIIK_00860 0.79 +0.2 189,383 - OKGIIK_00860 0.79 -2.2 189,383 - OKGIIK_00860 0.79 -0.0 189,383 - OKGIIK_00860 0.79 +0.4 189,383 - OKGIIK_00860 0.79 +0.1 189,559 + +0.3 189,870 + OKGIIK_00865 0.25 +1.3 189,871 - OKGIIK_00865 0.26 +0.1 189,871 - OKGIIK_00865 0.26 -0.8 189,892 + OKGIIK_00865 0.27 +1.5 189,921 + OKGIIK_00865 0.29 -1.6 189,921 + OKGIIK_00865 0.29 -0.9 189,921 + OKGIIK_00865 0.29 +1.0 189,921 + OKGIIK_00865 0.29 -2.0 189,922 - OKGIIK_00865 0.29 +0.8 189,922 - OKGIIK_00865 0.29 -0.2 189,922 - OKGIIK_00865 0.29 -0.8 189,922 - OKGIIK_00865 0.29 -1.0 189,922 - OKGIIK_00865 0.29 +0.2
Or see this region's nucleotide sequence