Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_00815

Experiment: R2A_PIPES pH 4.25

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcrp and OKGIIK_00810 are separated by 30 nucleotidesOKGIIK_00810 and OKGIIK_00815 are separated by 33 nucleotidesOKGIIK_00815 and OKGIIK_00820 are separated by 141 nucleotides OKGIIK_00805: crp - cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases, at 179,145 to 179,906 crp OKGIIK_00810: OKGIIK_00810 - Universal stress protein UspA, at 179,937 to 180,782 _00810 OKGIIK_00815: OKGIIK_00815 - GNAT family acetyltransferase, at 180,816 to 181,388 _00815 OKGIIK_00820: OKGIIK_00820 - CRP-like protein Clp, at 181,530 to 182,294 _00820 Position (kb) 180 181 182Strain fitness (log2 ratio) -2 -1 0 1 2 3at 179.905 kb on - strandat 179.905 kb on - strandat 180.028 kb on + strand, within OKGIIK_00810at 180.029 kb on - strand, within OKGIIK_00810at 180.115 kb on + strand, within OKGIIK_00810at 180.115 kb on + strand, within OKGIIK_00810at 180.115 kb on + strand, within OKGIIK_00810at 180.115 kb on + strand, within OKGIIK_00810at 180.115 kb on + strand, within OKGIIK_00810at 180.115 kb on + strand, within OKGIIK_00810at 180.115 kb on + strand, within OKGIIK_00810at 180.115 kb on + strand, within OKGIIK_00810at 180.115 kb on + strand, within OKGIIK_00810at 180.115 kb on + strand, within OKGIIK_00810at 180.115 kb on + strand, within OKGIIK_00810at 180.115 kb on + strand, within OKGIIK_00810at 180.115 kb on + strand, within OKGIIK_00810at 180.115 kb on + strand, within OKGIIK_00810at 180.116 kb on - strand, within OKGIIK_00810at 180.116 kb on - strand, within OKGIIK_00810at 180.116 kb on - strand, within OKGIIK_00810at 180.116 kb on - strand, within OKGIIK_00810at 180.116 kb on - strand, within OKGIIK_00810at 180.116 kb on - strand, within OKGIIK_00810at 180.116 kb on - strand, within OKGIIK_00810at 180.116 kb on - strand, within OKGIIK_00810at 180.116 kb on - strand, within OKGIIK_00810at 180.116 kb on - strand, within OKGIIK_00810at 180.151 kb on + strand, within OKGIIK_00810at 180.151 kb on + strand, within OKGIIK_00810at 180.152 kb on - strand, within OKGIIK_00810at 180.152 kb on - strand, within OKGIIK_00810at 180.152 kb on - strand, within OKGIIK_00810at 180.883 kb on + strand, within OKGIIK_00815at 180.883 kb on + strand, within OKGIIK_00815at 180.883 kb on + strand, within OKGIIK_00815at 180.883 kb on + strand, within OKGIIK_00815at 180.884 kb on - strand, within OKGIIK_00815at 180.884 kb on - strand, within OKGIIK_00815at 180.884 kb on - strand, within OKGIIK_00815at 180.884 kb on - strand, within OKGIIK_00815at 181.066 kb on + strand, within OKGIIK_00815at 181.066 kb on + strand, within OKGIIK_00815at 181.067 kb on - strand, within OKGIIK_00815at 181.067 kb on - strand, within OKGIIK_00815at 181.278 kb on + strand, within OKGIIK_00815at 181.278 kb on + strand, within OKGIIK_00815at 181.279 kb on - strand, within OKGIIK_00815at 181.279 kb on - strand, within OKGIIK_00815at 181.279 kb on - strand, within OKGIIK_00815at 181.279 kb on - strand, within OKGIIK_00815at 181.285 kb on - strand, within OKGIIK_00815at 181.477 kb on + strandat 181.477 kb on + strandat 181.477 kb on + strandat 181.477 kb on + strandat 181.477 kb on + strandat 181.477 kb on + strandat 181.477 kb on + strandat 181.477 kb on + strandat 181.477 kb on + strandat 181.477 kb on + strandat 181.478 kb on - strandat 181.478 kb on - strandat 181.478 kb on - strandat 181.478 kb on - strandat 181.478 kb on - strandat 181.478 kb on - strandat 181.478 kb on - strandat 181.478 kb on - strandat 181.478 kb on - strandat 181.478 kb on - strandat 181.478 kb on - strandat 181.635 kb on + strand, within OKGIIK_00820at 181.635 kb on + strand, within OKGIIK_00820at 181.635 kb on + strand, within OKGIIK_00820at 181.635 kb on + strand, within OKGIIK_00820at 181.636 kb on - strand, within OKGIIK_00820at 181.636 kb on - strand, within OKGIIK_00820at 181.636 kb on - strand, within OKGIIK_00820at 181.694 kb on + strand, within OKGIIK_00820at 181.696 kb on + strand, within OKGIIK_00820at 181.696 kb on + strand, within OKGIIK_00820at 181.696 kb on + strand, within OKGIIK_00820at 181.696 kb on + strand, within OKGIIK_00820at 181.696 kb on + strand, within OKGIIK_00820at 181.696 kb on + strand, within OKGIIK_00820at 181.696 kb on + strand, within OKGIIK_00820at 181.697 kb on - strand, within OKGIIK_00820at 181.697 kb on - strand, within OKGIIK_00820at 181.697 kb on - strand, within OKGIIK_00820at 181.697 kb on - strand, within OKGIIK_00820at 181.697 kb on - strand, within OKGIIK_00820at 181.697 kb on - strand, within OKGIIK_00820at 181.697 kb on - strand, within OKGIIK_00820at 181.697 kb on - strand, within OKGIIK_00820at 181.697 kb on - strand, within OKGIIK_00820at 181.711 kb on + strand, within OKGIIK_00820at 181.712 kb on - strand, within OKGIIK_00820at 181.762 kb on + strand, within OKGIIK_00820at 181.763 kb on - strand, within OKGIIK_00820at 181.927 kb on + strand, within OKGIIK_00820at 181.927 kb on + strand, within OKGIIK_00820at 181.927 kb on + strand, within OKGIIK_00820at 181.928 kb on - strand, within OKGIIK_00820at 181.928 kb on - strand, within OKGIIK_00820at 181.928 kb on - strand, within OKGIIK_00820at 181.928 kb on - strand, within OKGIIK_00820at 181.928 kb on - strand, within OKGIIK_00820at 182.098 kb on + strand, within OKGIIK_00820at 182.098 kb on + strand, within OKGIIK_00820at 182.098 kb on + strand, within OKGIIK_00820at 182.098 kb on + strand, within OKGIIK_00820at 182.098 kb on + strand, within OKGIIK_00820at 182.098 kb on + strand, within OKGIIK_00820at 182.098 kb on + strand, within OKGIIK_00820at 182.098 kb on + strand, within OKGIIK_00820at 182.098 kb on + strand, within OKGIIK_00820at 182.098 kb on + strand, within OKGIIK_00820at 182.098 kb on + strand, within OKGIIK_00820at 182.098 kb on + strand, within OKGIIK_00820at 182.098 kb on + strand, within OKGIIK_00820at 182.099 kb on - strand, within OKGIIK_00820at 182.099 kb on - strand, within OKGIIK_00820at 182.099 kb on - strand, within OKGIIK_00820at 182.099 kb on - strand, within OKGIIK_00820at 182.099 kb on - strand, within OKGIIK_00820at 182.099 kb on - strand, within OKGIIK_00820at 182.099 kb on - strand, within OKGIIK_00820at 182.099 kb on - strand, within OKGIIK_00820at 182.099 kb on - strand, within OKGIIK_00820at 182.099 kb on - strand, within OKGIIK_00820at 182.099 kb on - strand, within OKGIIK_00820at 182.128 kb on + strand, within OKGIIK_00820at 182.128 kb on + strand, within OKGIIK_00820at 182.128 kb on + strand, within OKGIIK_00820at 182.129 kb on - strand, within OKGIIK_00820at 182.171 kb on + strand, within OKGIIK_00820at 182.366 kb on + strandat 182.366 kb on + strandat 182.366 kb on + strandat 182.366 kb on + strandat 182.366 kb on + strandat 182.366 kb on + strandat 182.366 kb on + strandat 182.367 kb on - strandat 182.367 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.25
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179,905 - +0.3
179,905 - +1.6
180,028 + OKGIIK_00810 0.11 -0.9
180,029 - OKGIIK_00810 0.11 +1.0
180,115 + OKGIIK_00810 0.21 +0.3
180,115 + OKGIIK_00810 0.21 -0.2
180,115 + OKGIIK_00810 0.21 -1.9
180,115 + OKGIIK_00810 0.21 -1.0
180,115 + OKGIIK_00810 0.21 +1.2
180,115 + OKGIIK_00810 0.21 +0.5
180,115 + OKGIIK_00810 0.21 -0.3
180,115 + OKGIIK_00810 0.21 -0.6
180,115 + OKGIIK_00810 0.21 -0.9
180,115 + OKGIIK_00810 0.21 +1.3
180,115 + OKGIIK_00810 0.21 +0.4
180,115 + OKGIIK_00810 0.21 +0.3
180,115 + OKGIIK_00810 0.21 +0.7
180,115 + OKGIIK_00810 0.21 -1.0
180,116 - OKGIIK_00810 0.21 -0.4
180,116 - OKGIIK_00810 0.21 -2.2
180,116 - OKGIIK_00810 0.21 -0.7
180,116 - OKGIIK_00810 0.21 -2.5
180,116 - OKGIIK_00810 0.21 +0.2
180,116 - OKGIIK_00810 0.21 -1.4
180,116 - OKGIIK_00810 0.21 +0.2
180,116 - OKGIIK_00810 0.21 +1.7
180,116 - OKGIIK_00810 0.21 +0.8
180,116 - OKGIIK_00810 0.21 -0.0
180,151 + OKGIIK_00810 0.25 -0.0
180,151 + OKGIIK_00810 0.25 -1.4
180,152 - OKGIIK_00810 0.25 +0.6
180,152 - OKGIIK_00810 0.25 +0.2
180,152 - OKGIIK_00810 0.25 -0.9
180,883 + OKGIIK_00815 0.12 +0.1
180,883 + OKGIIK_00815 0.12 -1.0
180,883 + OKGIIK_00815 0.12 -0.5
180,883 + OKGIIK_00815 0.12 -0.2
180,884 - OKGIIK_00815 0.12 +0.5
180,884 - OKGIIK_00815 0.12 -0.3
180,884 - OKGIIK_00815 0.12 -0.9
180,884 - OKGIIK_00815 0.12 +1.3
181,066 + OKGIIK_00815 0.44 +1.0
181,066 + OKGIIK_00815 0.44 +1.4
181,067 - OKGIIK_00815 0.44 -0.9
181,067 - OKGIIK_00815 0.44 +1.3
181,278 + OKGIIK_00815 0.81 +0.5
181,278 + OKGIIK_00815 0.81 -1.9
181,279 - OKGIIK_00815 0.81 -0.8
181,279 - OKGIIK_00815 0.81 -0.4
181,279 - OKGIIK_00815 0.81 -0.4
181,279 - OKGIIK_00815 0.81 +0.7
181,285 - OKGIIK_00815 0.82 +0.3
181,477 + +0.2
181,477 + +0.1
181,477 + -0.7
181,477 + -1.4
181,477 + -1.9
181,477 + +0.8
181,477 + +1.0
181,477 + +0.7
181,477 + +0.4
181,477 + -1.9
181,478 - -0.3
181,478 - +1.0
181,478 - -0.1
181,478 - +2.5
181,478 - +0.5
181,478 - -0.8
181,478 - +0.1
181,478 - +0.4
181,478 - +0.8
181,478 - +0.2
181,478 - +0.8
181,635 + OKGIIK_00820 0.14 +3.3
181,635 + OKGIIK_00820 0.14 +0.4
181,635 + OKGIIK_00820 0.14 -0.9
181,635 + OKGIIK_00820 0.14 -0.4
181,636 - OKGIIK_00820 0.14 -1.6
181,636 - OKGIIK_00820 0.14 -0.0
181,636 - OKGIIK_00820 0.14 -0.3
181,694 + OKGIIK_00820 0.21 +1.0
181,696 + OKGIIK_00820 0.22 +0.7
181,696 + OKGIIK_00820 0.22 +0.5
181,696 + OKGIIK_00820 0.22 +0.2
181,696 + OKGIIK_00820 0.22 -1.4
181,696 + OKGIIK_00820 0.22 +1.3
181,696 + OKGIIK_00820 0.22 -0.0
181,696 + OKGIIK_00820 0.22 +1.3
181,697 - OKGIIK_00820 0.22 -0.0
181,697 - OKGIIK_00820 0.22 -2.4
181,697 - OKGIIK_00820 0.22 +0.8
181,697 - OKGIIK_00820 0.22 -0.1
181,697 - OKGIIK_00820 0.22 +0.2
181,697 - OKGIIK_00820 0.22 +1.4
181,697 - OKGIIK_00820 0.22 +1.8
181,697 - OKGIIK_00820 0.22 +1.0
181,697 - OKGIIK_00820 0.22 +0.5
181,711 + OKGIIK_00820 0.24 +0.4
181,712 - OKGIIK_00820 0.24 +0.4
181,762 + OKGIIK_00820 0.30 -0.6
181,763 - OKGIIK_00820 0.30 -0.2
181,927 + OKGIIK_00820 0.52 +0.3
181,927 + OKGIIK_00820 0.52 +0.8
181,927 + OKGIIK_00820 0.52 -1.6
181,928 - OKGIIK_00820 0.52 -0.0
181,928 - OKGIIK_00820 0.52 +0.3
181,928 - OKGIIK_00820 0.52 +1.4
181,928 - OKGIIK_00820 0.52 -1.6
181,928 - OKGIIK_00820 0.52 -2.3
182,098 + OKGIIK_00820 0.74 +0.5
182,098 + OKGIIK_00820 0.74 -1.2
182,098 + OKGIIK_00820 0.74 -1.0
182,098 + OKGIIK_00820 0.74 -1.3
182,098 + OKGIIK_00820 0.74 +0.7
182,098 + OKGIIK_00820 0.74 -0.8
182,098 + OKGIIK_00820 0.74 +0.6
182,098 + OKGIIK_00820 0.74 +0.6
182,098 + OKGIIK_00820 0.74 -0.4
182,098 + OKGIIK_00820 0.74 -0.3
182,098 + OKGIIK_00820 0.74 -0.2
182,098 + OKGIIK_00820 0.74 +1.7
182,098 + OKGIIK_00820 0.74 +0.4
182,099 - OKGIIK_00820 0.74 -0.5
182,099 - OKGIIK_00820 0.74 +0.3
182,099 - OKGIIK_00820 0.74 -0.0
182,099 - OKGIIK_00820 0.74 -1.4
182,099 - OKGIIK_00820 0.74 +0.3
182,099 - OKGIIK_00820 0.74 +0.2
182,099 - OKGIIK_00820 0.74 +2.0
182,099 - OKGIIK_00820 0.74 -0.6
182,099 - OKGIIK_00820 0.74 -0.1
182,099 - OKGIIK_00820 0.74 -0.3
182,099 - OKGIIK_00820 0.74 -1.8
182,128 + OKGIIK_00820 0.78 -0.0
182,128 + OKGIIK_00820 0.78 +1.0
182,128 + OKGIIK_00820 0.78 +0.4
182,129 - OKGIIK_00820 0.78 +0.5
182,171 + OKGIIK_00820 0.84 -1.5
182,366 + -0.6
182,366 + -0.5
182,366 + +0.9
182,366 + -0.7
182,366 + +1.4
182,366 + +0.7
182,366 + -0.0
182,367 - +0.2
182,367 - +0.7

Or see this region's nucleotide sequence