Experiment: R2A_PIPES pH 4.25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_00570 and OKGIIK_00575 overlap by 4 nucleotides OKGIIK_00575 and OKGIIK_00580 overlap by 1 nucleotides OKGIIK_00580 and OKGIIK_00585 overlap by 8 nucleotides OKGIIK_00585 and vgrG overlap by 4 nucleotides vgrG and OKGIIK_00595 are separated by 340 nucleotides
OKGIIK_00570: OKGIIK_00570 - Peptidoglycan-binding protein, at 128,216 to 128,971
_00570
OKGIIK_00575: OKGIIK_00575 - Contractile injection system tube protein, at 128,968 to 129,624
_00575
OKGIIK_00580: OKGIIK_00580 - hypothetical protein, at 129,624 to 129,944
_00580
OKGIIK_00585: OKGIIK_00585 - hypothetical protein, at 129,937 to 131,073
_00585
OKGIIK_00590: vgrG - baseplate assembly protein, at 131,070 to 131,576
vgrG
OKGIIK_00595: OKGIIK_00595 - hypothetical protein, at 131,917 to 132,240
_00595
Position (kb) 129
130
131
132 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 129.064 kb on + strand, within OKGIIK_00575 at 129.064 kb on + strand, within OKGIIK_00575 at 129.064 kb on + strand, within OKGIIK_00575 at 129.064 kb on + strand, within OKGIIK_00575 at 129.064 kb on + strand, within OKGIIK_00575 at 129.064 kb on + strand, within OKGIIK_00575 at 129.064 kb on + strand, within OKGIIK_00575 at 129.064 kb on + strand, within OKGIIK_00575 at 129.064 kb on + strand, within OKGIIK_00575 at 129.064 kb on + strand, within OKGIIK_00575 at 129.064 kb on + strand, within OKGIIK_00575 at 129.065 kb on - strand, within OKGIIK_00575 at 129.065 kb on - strand, within OKGIIK_00575 at 129.065 kb on - strand, within OKGIIK_00575 at 129.065 kb on - strand, within OKGIIK_00575 at 129.065 kb on - strand, within OKGIIK_00575 at 129.065 kb on - strand, within OKGIIK_00575 at 129.065 kb on - strand, within OKGIIK_00575 at 129.065 kb on - strand, within OKGIIK_00575 at 129.065 kb on - strand, within OKGIIK_00575 at 129.065 kb on - strand, within OKGIIK_00575 at 129.098 kb on + strand, within OKGIIK_00575 at 129.098 kb on + strand, within OKGIIK_00575 at 129.099 kb on - strand, within OKGIIK_00575 at 129.099 kb on - strand, within OKGIIK_00575 at 129.099 kb on - strand, within OKGIIK_00575 at 129.283 kb on + strand, within OKGIIK_00575 at 129.284 kb on - strand, within OKGIIK_00575 at 129.547 kb on + strand, within OKGIIK_00575 at 129.547 kb on + strand, within OKGIIK_00575 at 129.547 kb on + strand, within OKGIIK_00575 at 129.547 kb on + strand, within OKGIIK_00575 at 129.547 kb on + strand, within OKGIIK_00575 at 129.548 kb on - strand, within OKGIIK_00575 at 129.548 kb on - strand, within OKGIIK_00575 at 129.548 kb on - strand, within OKGIIK_00575 at 129.548 kb on - strand, within OKGIIK_00575 at 129.708 kb on + strand, within OKGIIK_00580 at 129.708 kb on + strand, within OKGIIK_00580 at 129.708 kb on + strand, within OKGIIK_00580 at 129.708 kb on + strand, within OKGIIK_00580 at 129.708 kb on + strand, within OKGIIK_00580 at 129.709 kb on - strand, within OKGIIK_00580 at 129.709 kb on - strand, within OKGIIK_00580 at 129.709 kb on - strand, within OKGIIK_00580 at 129.709 kb on - strand, within OKGIIK_00580 at 129.709 kb on - strand, within OKGIIK_00580 at 129.709 kb on - strand, within OKGIIK_00580 at 129.709 kb on - strand, within OKGIIK_00580 at 129.709 kb on - strand, within OKGIIK_00580 at 129.709 kb on - strand, within OKGIIK_00580 at 129.808 kb on - strand, within OKGIIK_00580 at 129.923 kb on - strand at 129.923 kb on - strand at 130.321 kb on + strand, within OKGIIK_00585 at 130.369 kb on + strand, within OKGIIK_00585 at 130.370 kb on - strand, within OKGIIK_00585 at 130.370 kb on - strand, within OKGIIK_00585 at 130.370 kb on - strand, within OKGIIK_00585 at 130.370 kb on - strand, within OKGIIK_00585 at 130.370 kb on - strand, within OKGIIK_00585 at 130.400 kb on + strand, within OKGIIK_00585 at 130.471 kb on + strand, within OKGIIK_00585 at 130.471 kb on + strand, within OKGIIK_00585 at 130.471 kb on + strand, within OKGIIK_00585 at 130.471 kb on + strand, within OKGIIK_00585 at 130.471 kb on + strand, within OKGIIK_00585 at 130.471 kb on + strand, within OKGIIK_00585 at 130.471 kb on + strand, within OKGIIK_00585 at 130.471 kb on + strand, within OKGIIK_00585 at 130.471 kb on + strand, within OKGIIK_00585 at 130.471 kb on + strand, within OKGIIK_00585 at 130.471 kb on + strand, within OKGIIK_00585 at 130.472 kb on - strand, within OKGIIK_00585 at 130.472 kb on - strand, within OKGIIK_00585 at 130.472 kb on - strand, within OKGIIK_00585 at 130.472 kb on - strand, within OKGIIK_00585 at 130.472 kb on - strand, within OKGIIK_00585 at 130.472 kb on - strand, within OKGIIK_00585 at 130.472 kb on - strand, within OKGIIK_00585 at 130.472 kb on - strand, within OKGIIK_00585 at 130.472 kb on - strand, within OKGIIK_00585 at 130.472 kb on - strand, within OKGIIK_00585 at 130.472 kb on - strand, within OKGIIK_00585 at 130.501 kb on + strand, within OKGIIK_00585 at 130.502 kb on - strand, within OKGIIK_00585 at 130.502 kb on - strand, within OKGIIK_00585 at 130.502 kb on - strand, within OKGIIK_00585 at 130.502 kb on - strand, within OKGIIK_00585 at 130.502 kb on - strand, within OKGIIK_00585 at 130.510 kb on + strand, within OKGIIK_00585 at 130.510 kb on + strand, within OKGIIK_00585 at 130.510 kb on + strand, within OKGIIK_00585 at 130.510 kb on + strand, within OKGIIK_00585 at 130.511 kb on - strand, within OKGIIK_00585 at 130.511 kb on - strand, within OKGIIK_00585 at 130.511 kb on - strand, within OKGIIK_00585 at 130.511 kb on - strand, within OKGIIK_00585 at 130.511 kb on - strand, within OKGIIK_00585 at 130.511 kb on - strand, within OKGIIK_00585 at 130.511 kb on - strand, within OKGIIK_00585 at 130.511 kb on - strand, within OKGIIK_00585 at 130.511 kb on - strand, within OKGIIK_00585 at 130.511 kb on - strand, within OKGIIK_00585 at 130.550 kb on - strand, within OKGIIK_00585 at 130.550 kb on - strand, within OKGIIK_00585 at 130.550 kb on - strand, within OKGIIK_00585 at 130.550 kb on - strand, within OKGIIK_00585 at 130.642 kb on + strand, within OKGIIK_00585 at 130.642 kb on + strand, within OKGIIK_00585 at 130.642 kb on + strand, within OKGIIK_00585 at 130.642 kb on + strand, within OKGIIK_00585 at 130.642 kb on + strand, within OKGIIK_00585 at 130.642 kb on + strand, within OKGIIK_00585 at 130.643 kb on - strand, within OKGIIK_00585 at 130.643 kb on - strand, within OKGIIK_00585 at 130.643 kb on - strand, within OKGIIK_00585 at 130.643 kb on - strand, within OKGIIK_00585 at 130.643 kb on - strand, within OKGIIK_00585 at 130.643 kb on - strand, within OKGIIK_00585 at 130.643 kb on - strand, within OKGIIK_00585 at 130.675 kb on + strand, within OKGIIK_00585 at 130.675 kb on + strand, within OKGIIK_00585 at 130.675 kb on + strand, within OKGIIK_00585 at 130.675 kb on + strand, within OKGIIK_00585 at 130.675 kb on + strand, within OKGIIK_00585 at 130.676 kb on - strand, within OKGIIK_00585 at 130.676 kb on - strand, within OKGIIK_00585 at 130.676 kb on - strand, within OKGIIK_00585 at 130.676 kb on - strand, within OKGIIK_00585 at 130.676 kb on - strand, within OKGIIK_00585 at 130.676 kb on - strand, within OKGIIK_00585 at 130.676 kb on - strand, within OKGIIK_00585 at 130.676 kb on - strand, within OKGIIK_00585 at 130.804 kb on + strand, within OKGIIK_00585 at 130.804 kb on + strand, within OKGIIK_00585 at 130.804 kb on + strand, within OKGIIK_00585 at 130.804 kb on + strand, within OKGIIK_00585 at 130.804 kb on + strand, within OKGIIK_00585 at 130.804 kb on + strand, within OKGIIK_00585 at 130.805 kb on - strand, within OKGIIK_00585 at 130.805 kb on - strand, within OKGIIK_00585 at 130.805 kb on - strand, within OKGIIK_00585 at 130.969 kb on + strand at 130.969 kb on + strand at 130.969 kb on + strand at 130.969 kb on + strand at 130.969 kb on + strand at 130.969 kb on + strand at 130.970 kb on - strand at 130.970 kb on - strand at 130.970 kb on - strand at 130.970 kb on - strand at 130.970 kb on - strand at 130.970 kb on - strand at 131.008 kb on + strand at 131.008 kb on + strand at 131.008 kb on + strand at 131.009 kb on - strand at 131.009 kb on - strand at 131.009 kb on - strand at 131.009 kb on - strand at 131.009 kb on - strand at 131.009 kb on - strand at 131.079 kb on + strand at 131.079 kb on + strand at 131.079 kb on + strand at 131.079 kb on + strand at 131.079 kb on + strand at 131.079 kb on + strand at 131.079 kb on + strand at 131.079 kb on + strand at 131.079 kb on + strand at 131.079 kb on + strand at 131.079 kb on + strand at 131.079 kb on + strand at 131.079 kb on + strand at 131.079 kb on + strand at 131.080 kb on - strand at 131.080 kb on - strand at 131.080 kb on - strand at 131.080 kb on - strand at 131.080 kb on - strand at 131.080 kb on - strand at 131.080 kb on - strand at 131.080 kb on - strand at 131.080 kb on - strand at 131.080 kb on - strand at 131.080 kb on - strand at 131.080 kb on - strand at 131.080 kb on - strand at 131.080 kb on - strand at 131.080 kb on - strand at 131.080 kb on - strand at 131.081 kb on - strand at 131.082 kb on + strand at 131.082 kb on + strand at 131.082 kb on + strand at 131.082 kb on + strand at 131.083 kb on - strand at 131.083 kb on - strand at 131.083 kb on - strand at 131.091 kb on + strand at 131.091 kb on + strand at 131.091 kb on + strand at 131.092 kb on - strand at 131.229 kb on + strand, within vgrG at 131.229 kb on + strand, within vgrG at 131.229 kb on + strand, within vgrG at 131.229 kb on + strand, within vgrG at 131.230 kb on - strand, within vgrG at 131.230 kb on - strand, within vgrG at 131.230 kb on - strand, within vgrG at 131.230 kb on - strand, within vgrG at 131.230 kb on - strand, within vgrG at 131.230 kb on - strand, within vgrG at 131.289 kb on + strand, within vgrG at 131.600 kb on - strand at 131.717 kb on + strand at 131.717 kb on + strand at 131.717 kb on + strand at 131.717 kb on + strand at 131.718 kb on - strand at 131.719 kb on + strand at 131.719 kb on + strand at 131.720 kb on - strand at 131.720 kb on - strand at 131.720 kb on - strand at 131.903 kb on + strand at 131.903 kb on + strand at 131.904 kb on - strand at 131.904 kb on - strand at 131.904 kb on - strand at 131.904 kb on - strand at 131.904 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.25 remove 129,064 + OKGIIK_00575 0.15 +1.0 129,064 + OKGIIK_00575 0.15 +0.4 129,064 + OKGIIK_00575 0.15 +0.6 129,064 + OKGIIK_00575 0.15 -0.0 129,064 + OKGIIK_00575 0.15 +1.2 129,064 + OKGIIK_00575 0.15 -0.3 129,064 + OKGIIK_00575 0.15 +0.2 129,064 + OKGIIK_00575 0.15 -0.0 129,064 + OKGIIK_00575 0.15 +0.4 129,064 + OKGIIK_00575 0.15 -1.7 129,064 + OKGIIK_00575 0.15 -0.6 129,065 - OKGIIK_00575 0.15 +0.5 129,065 - OKGIIK_00575 0.15 -1.2 129,065 - OKGIIK_00575 0.15 -2.5 129,065 - OKGIIK_00575 0.15 +0.5 129,065 - OKGIIK_00575 0.15 +0.2 129,065 - OKGIIK_00575 0.15 -0.6 129,065 - OKGIIK_00575 0.15 -2.4 129,065 - OKGIIK_00575 0.15 +0.7 129,065 - OKGIIK_00575 0.15 +2.3 129,065 - OKGIIK_00575 0.15 +0.7 129,098 + OKGIIK_00575 0.20 +0.7 129,098 + OKGIIK_00575 0.20 -0.4 129,099 - OKGIIK_00575 0.20 -0.0 129,099 - OKGIIK_00575 0.20 -0.2 129,099 - OKGIIK_00575 0.20 +0.4 129,283 + OKGIIK_00575 0.48 -1.4 129,284 - OKGIIK_00575 0.48 -0.4 129,547 + OKGIIK_00575 0.88 +0.1 129,547 + OKGIIK_00575 0.88 -2.0 129,547 + OKGIIK_00575 0.88 +0.1 129,547 + OKGIIK_00575 0.88 -0.9 129,547 + OKGIIK_00575 0.88 +0.3 129,548 - OKGIIK_00575 0.88 +0.2 129,548 - OKGIIK_00575 0.88 +0.4 129,548 - OKGIIK_00575 0.88 -1.6 129,548 - OKGIIK_00575 0.88 -0.3 129,708 + OKGIIK_00580 0.26 +1.0 129,708 + OKGIIK_00580 0.26 +0.5 129,708 + OKGIIK_00580 0.26 +1.3 129,708 + OKGIIK_00580 0.26 -0.9 129,708 + OKGIIK_00580 0.26 +0.1 129,709 - OKGIIK_00580 0.26 -2.4 129,709 - OKGIIK_00580 0.26 -1.4 129,709 - OKGIIK_00580 0.26 +0.2 129,709 - OKGIIK_00580 0.26 +0.4 129,709 - OKGIIK_00580 0.26 -1.9 129,709 - OKGIIK_00580 0.26 -2.0 129,709 - OKGIIK_00580 0.26 -1.0 129,709 - OKGIIK_00580 0.26 -0.0 129,709 - OKGIIK_00580 0.26 -1.6 129,808 - OKGIIK_00580 0.57 +0.5 129,923 - +1.0 129,923 - -0.2 130,321 + OKGIIK_00585 0.34 +0.1 130,369 + OKGIIK_00585 0.38 +0.8 130,370 - OKGIIK_00585 0.38 -0.4 130,370 - OKGIIK_00585 0.38 -1.0 130,370 - OKGIIK_00585 0.38 -1.0 130,370 - OKGIIK_00585 0.38 -0.4 130,370 - OKGIIK_00585 0.38 +0.7 130,400 + OKGIIK_00585 0.41 +0.5 130,471 + OKGIIK_00585 0.47 +0.5 130,471 + OKGIIK_00585 0.47 -0.9 130,471 + OKGIIK_00585 0.47 -0.0 130,471 + OKGIIK_00585 0.47 +0.5 130,471 + OKGIIK_00585 0.47 +2.5 130,471 + OKGIIK_00585 0.47 +0.4 130,471 + OKGIIK_00585 0.47 +0.2 130,471 + OKGIIK_00585 0.47 +1.5 130,471 + OKGIIK_00585 0.47 +0.2 130,471 + OKGIIK_00585 0.47 +0.2 130,471 + OKGIIK_00585 0.47 -0.6 130,472 - OKGIIK_00585 0.47 +1.8 130,472 - OKGIIK_00585 0.47 +1.0 130,472 - OKGIIK_00585 0.47 +1.5 130,472 - OKGIIK_00585 0.47 +1.0 130,472 - OKGIIK_00585 0.47 -0.0 130,472 - OKGIIK_00585 0.47 -0.1 130,472 - OKGIIK_00585 0.47 +1.7 130,472 - OKGIIK_00585 0.47 +0.5 130,472 - OKGIIK_00585 0.47 -1.0 130,472 - OKGIIK_00585 0.47 +1.2 130,472 - OKGIIK_00585 0.47 +0.2 130,501 + OKGIIK_00585 0.50 +0.8 130,502 - OKGIIK_00585 0.50 -0.6 130,502 - OKGIIK_00585 0.50 +3.0 130,502 - OKGIIK_00585 0.50 +1.0 130,502 - OKGIIK_00585 0.50 -0.6 130,502 - OKGIIK_00585 0.50 -0.2 130,510 + OKGIIK_00585 0.50 -0.4 130,510 + OKGIIK_00585 0.50 +0.6 130,510 + OKGIIK_00585 0.50 -1.5 130,510 + OKGIIK_00585 0.50 +1.4 130,511 - OKGIIK_00585 0.50 -1.6 130,511 - OKGIIK_00585 0.50 +0.1 130,511 - OKGIIK_00585 0.50 +1.2 130,511 - OKGIIK_00585 0.50 -0.6 130,511 - OKGIIK_00585 0.50 -1.6 130,511 - OKGIIK_00585 0.50 +0.1 130,511 - OKGIIK_00585 0.50 +2.0 130,511 - OKGIIK_00585 0.50 +1.8 130,511 - OKGIIK_00585 0.50 -1.0 130,511 - OKGIIK_00585 0.50 -0.0 130,550 - OKGIIK_00585 0.54 +0.3 130,550 - OKGIIK_00585 0.54 +1.1 130,550 - OKGIIK_00585 0.54 -0.4 130,550 - OKGIIK_00585 0.54 +1.0 130,642 + OKGIIK_00585 0.62 -0.9 130,642 + OKGIIK_00585 0.62 -0.5 130,642 + OKGIIK_00585 0.62 -1.7 130,642 + OKGIIK_00585 0.62 +2.5 130,642 + OKGIIK_00585 0.62 -0.5 130,642 + OKGIIK_00585 0.62 -0.3 130,643 - OKGIIK_00585 0.62 -0.7 130,643 - OKGIIK_00585 0.62 -1.0 130,643 - OKGIIK_00585 0.62 -0.6 130,643 - OKGIIK_00585 0.62 +0.5 130,643 - OKGIIK_00585 0.62 +3.5 130,643 - OKGIIK_00585 0.62 -1.8 130,643 - OKGIIK_00585 0.62 -0.4 130,675 + OKGIIK_00585 0.65 -1.2 130,675 + OKGIIK_00585 0.65 +1.0 130,675 + OKGIIK_00585 0.65 -0.6 130,675 + OKGIIK_00585 0.65 +0.0 130,675 + OKGIIK_00585 0.65 -0.3 130,676 - OKGIIK_00585 0.65 -0.3 130,676 - OKGIIK_00585 0.65 -1.9 130,676 - OKGIIK_00585 0.65 -0.1 130,676 - OKGIIK_00585 0.65 -2.0 130,676 - OKGIIK_00585 0.65 +1.4 130,676 - OKGIIK_00585 0.65 +0.4 130,676 - OKGIIK_00585 0.65 -1.4 130,676 - OKGIIK_00585 0.65 +0.2 130,804 + OKGIIK_00585 0.76 +0.6 130,804 + OKGIIK_00585 0.76 +1.0 130,804 + OKGIIK_00585 0.76 +1.6 130,804 + OKGIIK_00585 0.76 +0.4 130,804 + OKGIIK_00585 0.76 +0.2 130,804 + OKGIIK_00585 0.76 -1.2 130,805 - OKGIIK_00585 0.76 -0.0 130,805 - OKGIIK_00585 0.76 +0.4 130,805 - OKGIIK_00585 0.76 +0.4 130,969 + +2.5 130,969 + -1.6 130,969 + -1.0 130,969 + +0.6 130,969 + +0.0 130,969 + +0.5 130,970 - +0.6 130,970 - +1.0 130,970 - -1.0 130,970 - +1.4 130,970 - -0.8 130,970 - +0.4 131,008 + +2.5 131,008 + +0.6 131,008 + -0.4 131,009 - -0.9 131,009 - -1.7 131,009 - +0.1 131,009 - +0.2 131,009 - -0.6 131,009 - +0.7 131,079 + -0.9 131,079 + +0.6 131,079 + +0.1 131,079 + -1.5 131,079 + -0.6 131,079 + -0.9 131,079 + +0.4 131,079 + +1.0 131,079 + -1.4 131,079 + +0.4 131,079 + -0.3 131,079 + +1.3 131,079 + -0.8 131,079 + -1.0 131,080 - +0.3 131,080 - -0.0 131,080 - +1.0 131,080 - +2.7 131,080 - +1.0 131,080 - +0.1 131,080 - -0.0 131,080 - +0.6 131,080 - -1.4 131,080 - -0.2 131,080 - +1.0 131,080 - +1.3 131,080 - +0.4 131,080 - +1.1 131,080 - -0.0 131,080 - -1.0 131,081 - +0.4 131,082 + -0.4 131,082 + -0.2 131,082 + +1.0 131,082 + -0.0 131,083 - +0.0 131,083 - +0.4 131,083 - -0.5 131,091 + -0.4 131,091 + -1.9 131,091 + +0.5 131,092 - -1.2 131,229 + vgrG OKGIIK_00590 0.31 +1.0 131,229 + vgrG OKGIIK_00590 0.31 -0.9 131,229 + vgrG OKGIIK_00590 0.31 -0.0 131,229 + vgrG OKGIIK_00590 0.31 +0.2 131,230 - vgrG OKGIIK_00590 0.32 -0.0 131,230 - vgrG OKGIIK_00590 0.32 -0.0 131,230 - vgrG OKGIIK_00590 0.32 +0.5 131,230 - vgrG OKGIIK_00590 0.32 +0.4 131,230 - vgrG OKGIIK_00590 0.32 -1.4 131,230 - vgrG OKGIIK_00590 0.32 -1.0 131,289 + vgrG OKGIIK_00590 0.43 -0.3 131,600 - +1.6 131,717 + -1.3 131,717 + -1.4 131,717 + +0.7 131,717 + +0.4 131,718 - -0.0 131,719 + -1.9 131,719 + +0.6 131,720 - +0.0 131,720 - -1.0 131,720 - +0.5 131,903 + -0.9 131,903 + +0.5 131,904 - -0.3 131,904 - -1.2 131,904 - -0.7 131,904 - +1.0 131,904 - +1.7
Or see this region's nucleotide sequence