Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_00550

Experiment: R2A_PIPES pH 4.25

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_00540 and OKGIIK_00545 overlap by 4 nucleotidesOKGIIK_00545 and OKGIIK_00550 are separated by 208 nucleotidesOKGIIK_00550 and OKGIIK_00555 are separated by 9 nucleotidesOKGIIK_00555 and OKGIIK_00560 overlap by 14 nucleotides OKGIIK_00540: OKGIIK_00540 - AAA family ATPase, at 121,603 to 123,777 _00540 OKGIIK_00545: OKGIIK_00545 - hypothetical protein, at 123,774 to 124,067 _00545 OKGIIK_00550: OKGIIK_00550 - hypothetical protein, at 124,276 to 124,977 _00550 OKGIIK_00555: OKGIIK_00555 - hypothetical protein, at 124,987 to 125,547 _00555 OKGIIK_00560: OKGIIK_00560 - DUF4157 domain-containing protein, at 125,534 to 127,381 _00560 Position (kb) 124 125Strain fitness (log2 ratio) -2 -1 0 1 2 3at 123.373 kb on - strand, within OKGIIK_00540at 123.385 kb on + strand, within OKGIIK_00540at 123.385 kb on + strand, within OKGIIK_00540at 123.385 kb on + strand, within OKGIIK_00540at 123.386 kb on - strand, within OKGIIK_00540at 123.386 kb on - strand, within OKGIIK_00540at 123.386 kb on - strand, within OKGIIK_00540at 123.386 kb on - strand, within OKGIIK_00540at 123.386 kb on - strand, within OKGIIK_00540at 123.386 kb on - strand, within OKGIIK_00540at 123.914 kb on + strand, within OKGIIK_00545at 123.915 kb on - strand, within OKGIIK_00545at 124.370 kb on - strand, within OKGIIK_00550at 124.372 kb on - strand, within OKGIIK_00550at 124.624 kb on + strand, within OKGIIK_00550at 124.624 kb on + strand, within OKGIIK_00550at 124.624 kb on + strand, within OKGIIK_00550at 124.625 kb on - strand, within OKGIIK_00550at 124.625 kb on - strand, within OKGIIK_00550at 124.816 kb on + strand, within OKGIIK_00550at 124.816 kb on + strand, within OKGIIK_00550at 124.816 kb on + strand, within OKGIIK_00550at 124.816 kb on + strand, within OKGIIK_00550at 124.816 kb on + strand, within OKGIIK_00550at 124.817 kb on - strand, within OKGIIK_00550at 124.817 kb on - strand, within OKGIIK_00550at 124.817 kb on - strand, within OKGIIK_00550at 124.870 kb on + strand, within OKGIIK_00550at 124.870 kb on + strand, within OKGIIK_00550at 124.870 kb on + strand, within OKGIIK_00550at 124.871 kb on - strand, within OKGIIK_00550at 124.871 kb on - strand, within OKGIIK_00550at 124.872 kb on + strand, within OKGIIK_00550at 124.872 kb on + strand, within OKGIIK_00550at 124.873 kb on - strand, within OKGIIK_00550at 124.965 kb on + strandat 124.971 kb on + strandat 124.971 kb on + strandat 124.972 kb on - strandat 124.972 kb on - strandat 124.972 kb on - strandat 124.972 kb on - strandat 124.972 kb on - strandat 124.972 kb on - strandat 125.051 kb on - strand, within OKGIIK_00555at 125.051 kb on - strand, within OKGIIK_00555at 125.051 kb on - strand, within OKGIIK_00555at 125.051 kb on - strand, within OKGIIK_00555at 125.128 kb on + strand, within OKGIIK_00555at 125.128 kb on + strand, within OKGIIK_00555at 125.128 kb on + strand, within OKGIIK_00555at 125.128 kb on + strand, within OKGIIK_00555at 125.129 kb on - strand, within OKGIIK_00555at 125.129 kb on - strand, within OKGIIK_00555at 125.129 kb on - strand, within OKGIIK_00555at 125.148 kb on - strand, within OKGIIK_00555at 125.179 kb on + strand, within OKGIIK_00555at 125.196 kb on - strand, within OKGIIK_00555at 125.210 kb on + strand, within OKGIIK_00555at 125.210 kb on + strand, within OKGIIK_00555at 125.211 kb on - strand, within OKGIIK_00555at 125.211 kb on - strand, within OKGIIK_00555at 125.211 kb on - strand, within OKGIIK_00555at 125.211 kb on - strand, within OKGIIK_00555at 125.293 kb on + strand, within OKGIIK_00555at 125.293 kb on + strand, within OKGIIK_00555at 125.293 kb on + strand, within OKGIIK_00555at 125.293 kb on + strand, within OKGIIK_00555at 125.293 kb on + strand, within OKGIIK_00555at 125.293 kb on + strand, within OKGIIK_00555at 125.293 kb on + strand, within OKGIIK_00555at 125.293 kb on + strand, within OKGIIK_00555at 125.293 kb on + strand, within OKGIIK_00555at 125.293 kb on + strand, within OKGIIK_00555at 125.294 kb on - strand, within OKGIIK_00555at 125.294 kb on - strand, within OKGIIK_00555at 125.294 kb on - strand, within OKGIIK_00555at 125.294 kb on - strand, within OKGIIK_00555at 125.294 kb on - strand, within OKGIIK_00555at 125.294 kb on - strand, within OKGIIK_00555at 125.294 kb on - strand, within OKGIIK_00555at 125.294 kb on - strand, within OKGIIK_00555at 125.294 kb on - strand, within OKGIIK_00555at 125.294 kb on - strand, within OKGIIK_00555at 125.294 kb on - strand, within OKGIIK_00555at 125.294 kb on - strand, within OKGIIK_00555at 125.294 kb on - strand, within OKGIIK_00555at 125.294 kb on - strand, within OKGIIK_00555at 125.294 kb on - strand, within OKGIIK_00555at 125.377 kb on + strand, within OKGIIK_00555at 125.377 kb on + strand, within OKGIIK_00555at 125.377 kb on + strand, within OKGIIK_00555at 125.378 kb on - strand, within OKGIIK_00555at 125.378 kb on - strand, within OKGIIK_00555at 125.378 kb on - strand, within OKGIIK_00555at 125.378 kb on - strand, within OKGIIK_00555at 125.396 kb on + strand, within OKGIIK_00555at 125.397 kb on - strand, within OKGIIK_00555at 125.397 kb on - strand, within OKGIIK_00555at 125.397 kb on - strand, within OKGIIK_00555at 125.545 kb on + strandat 125.545 kb on + strandat 125.545 kb on + strandat 125.626 kb on + strandat 125.626 kb on + strandat 125.626 kb on + strandat 125.627 kb on - strandat 125.627 kb on - strandat 125.627 kb on - strandat 125.870 kb on + strand, within OKGIIK_00560at 125.910 kb on - strand, within OKGIIK_00560at 125.910 kb on - strand, within OKGIIK_00560

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.25
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123,373 - OKGIIK_00540 0.81 -0.4
123,385 + OKGIIK_00540 0.82 -0.0
123,385 + OKGIIK_00540 0.82 +0.2
123,385 + OKGIIK_00540 0.82 -0.4
123,386 - OKGIIK_00540 0.82 -0.0
123,386 - OKGIIK_00540 0.82 +0.9
123,386 - OKGIIK_00540 0.82 -0.4
123,386 - OKGIIK_00540 0.82 -0.3
123,386 - OKGIIK_00540 0.82 +2.0
123,386 - OKGIIK_00540 0.82 -0.0
123,914 + OKGIIK_00545 0.48 -0.0
123,915 - OKGIIK_00545 0.48 -0.3
124,370 - OKGIIK_00550 0.13 +0.4
124,372 - OKGIIK_00550 0.14 -2.2
124,624 + OKGIIK_00550 0.50 +2.5
124,624 + OKGIIK_00550 0.50 +0.5
124,624 + OKGIIK_00550 0.50 -1.0
124,625 - OKGIIK_00550 0.50 +0.3
124,625 - OKGIIK_00550 0.50 +1.2
124,816 + OKGIIK_00550 0.77 -0.8
124,816 + OKGIIK_00550 0.77 +0.2
124,816 + OKGIIK_00550 0.77 +0.3
124,816 + OKGIIK_00550 0.77 +0.3
124,816 + OKGIIK_00550 0.77 -1.4
124,817 - OKGIIK_00550 0.77 -0.4
124,817 - OKGIIK_00550 0.77 +0.3
124,817 - OKGIIK_00550 0.77 +1.0
124,870 + OKGIIK_00550 0.85 -0.5
124,870 + OKGIIK_00550 0.85 +2.0
124,870 + OKGIIK_00550 0.85 +2.0
124,871 - OKGIIK_00550 0.85 +2.1
124,871 - OKGIIK_00550 0.85 +0.5
124,872 + OKGIIK_00550 0.85 -0.5
124,872 + OKGIIK_00550 0.85 +0.1
124,873 - OKGIIK_00550 0.85 +0.5
124,965 + -0.9
124,971 + +1.0
124,971 + +1.0
124,972 - -1.5
124,972 - -0.0
124,972 - -0.3
124,972 - +1.4
124,972 - +3.0
124,972 - -1.9
125,051 - OKGIIK_00555 0.11 +0.3
125,051 - OKGIIK_00555 0.11 -0.8
125,051 - OKGIIK_00555 0.11 +0.4
125,051 - OKGIIK_00555 0.11 +0.4
125,128 + OKGIIK_00555 0.25 -1.9
125,128 + OKGIIK_00555 0.25 +0.5
125,128 + OKGIIK_00555 0.25 -1.5
125,128 + OKGIIK_00555 0.25 +0.4
125,129 - OKGIIK_00555 0.25 -2.5
125,129 - OKGIIK_00555 0.25 +0.3
125,129 - OKGIIK_00555 0.25 -0.0
125,148 - OKGIIK_00555 0.29 -1.0
125,179 + OKGIIK_00555 0.34 -2.0
125,196 - OKGIIK_00555 0.37 -2.2
125,210 + OKGIIK_00555 0.40 -0.1
125,210 + OKGIIK_00555 0.40 +0.2
125,211 - OKGIIK_00555 0.40 -0.6
125,211 - OKGIIK_00555 0.40 +2.5
125,211 - OKGIIK_00555 0.40 -1.5
125,211 - OKGIIK_00555 0.40 +0.5
125,293 + OKGIIK_00555 0.55 -0.4
125,293 + OKGIIK_00555 0.55 +2.0
125,293 + OKGIIK_00555 0.55 +0.9
125,293 + OKGIIK_00555 0.55 -0.5
125,293 + OKGIIK_00555 0.55 +1.0
125,293 + OKGIIK_00555 0.55 +2.3
125,293 + OKGIIK_00555 0.55 -0.6
125,293 + OKGIIK_00555 0.55 -1.4
125,293 + OKGIIK_00555 0.55 +0.8
125,293 + OKGIIK_00555 0.55 -0.6
125,294 - OKGIIK_00555 0.55 +0.5
125,294 - OKGIIK_00555 0.55 +1.0
125,294 - OKGIIK_00555 0.55 +1.6
125,294 - OKGIIK_00555 0.55 -0.2
125,294 - OKGIIK_00555 0.55 +2.0
125,294 - OKGIIK_00555 0.55 +0.6
125,294 - OKGIIK_00555 0.55 +0.1
125,294 - OKGIIK_00555 0.55 +2.1
125,294 - OKGIIK_00555 0.55 -1.5
125,294 - OKGIIK_00555 0.55 +1.0
125,294 - OKGIIK_00555 0.55 +0.5
125,294 - OKGIIK_00555 0.55 -1.0
125,294 - OKGIIK_00555 0.55 -0.0
125,294 - OKGIIK_00555 0.55 +0.1
125,294 - OKGIIK_00555 0.55 -1.0
125,377 + OKGIIK_00555 0.70 +0.2
125,377 + OKGIIK_00555 0.70 -0.6
125,377 + OKGIIK_00555 0.70 -0.2
125,378 - OKGIIK_00555 0.70 -1.3
125,378 - OKGIIK_00555 0.70 -0.3
125,378 - OKGIIK_00555 0.70 -1.5
125,378 - OKGIIK_00555 0.70 +1.2
125,396 + OKGIIK_00555 0.73 +0.5
125,397 - OKGIIK_00555 0.73 -0.2
125,397 - OKGIIK_00555 0.73 +0.5
125,397 - OKGIIK_00555 0.73 +1.5
125,545 + -1.9
125,545 + +1.0
125,545 + +1.5
125,626 + -1.5
125,626 + +1.0
125,626 + -0.2
125,627 - +1.4
125,627 - -0.9
125,627 - +0.3
125,870 + OKGIIK_00560 0.18 +1.0
125,910 - OKGIIK_00560 0.20 +0.6
125,910 - OKGIIK_00560 0.20 +0.9

Or see this region's nucleotide sequence