Experiment: R2A_PIPES pH 4.25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_00535 and OKGIIK_00540 overlap by 4 nucleotides OKGIIK_00540 and OKGIIK_00545 overlap by 4 nucleotides OKGIIK_00545 and OKGIIK_00550 are separated by 208 nucleotides
OKGIIK_00535: OKGIIK_00535 - Pvc16-N domain-containing protein, at 120,365 to 121,606
_00535
OKGIIK_00540: OKGIIK_00540 - AAA family ATPase, at 121,603 to 123,777
_00540
OKGIIK_00545: OKGIIK_00545 - hypothetical protein, at 123,774 to 124,067
_00545
OKGIIK_00550: OKGIIK_00550 - hypothetical protein, at 124,276 to 124,977
_00550
Position (kb) 121
122
123
124 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 120.630 kb on - strand, within OKGIIK_00535 at 120.860 kb on + strand, within OKGIIK_00535 at 120.860 kb on + strand, within OKGIIK_00535 at 120.860 kb on + strand, within OKGIIK_00535 at 120.861 kb on - strand, within OKGIIK_00535 at 120.861 kb on - strand, within OKGIIK_00535 at 120.861 kb on - strand, within OKGIIK_00535 at 120.861 kb on - strand, within OKGIIK_00535 at 120.878 kb on + strand, within OKGIIK_00535 at 120.879 kb on - strand, within OKGIIK_00535 at 120.879 kb on - strand, within OKGIIK_00535 at 120.879 kb on - strand, within OKGIIK_00535 at 121.010 kb on + strand, within OKGIIK_00535 at 121.011 kb on - strand, within OKGIIK_00535 at 121.226 kb on + strand, within OKGIIK_00535 at 121.226 kb on + strand, within OKGIIK_00535 at 121.226 kb on + strand, within OKGIIK_00535 at 121.226 kb on + strand, within OKGIIK_00535 at 121.226 kb on + strand, within OKGIIK_00535 at 121.226 kb on + strand, within OKGIIK_00535 at 121.226 kb on + strand, within OKGIIK_00535 at 121.226 kb on + strand, within OKGIIK_00535 at 121.226 kb on + strand, within OKGIIK_00535 at 121.226 kb on + strand, within OKGIIK_00535 at 121.226 kb on + strand, within OKGIIK_00535 at 121.226 kb on + strand, within OKGIIK_00535 at 121.226 kb on + strand, within OKGIIK_00535 at 121.226 kb on + strand, within OKGIIK_00535 at 121.226 kb on + strand, within OKGIIK_00535 at 121.226 kb on + strand, within OKGIIK_00535 at 121.226 kb on + strand, within OKGIIK_00535 at 121.226 kb on + strand, within OKGIIK_00535 at 121.226 kb on + strand, within OKGIIK_00535 at 121.227 kb on - strand, within OKGIIK_00535 at 121.227 kb on - strand, within OKGIIK_00535 at 121.227 kb on - strand, within OKGIIK_00535 at 121.227 kb on - strand, within OKGIIK_00535 at 121.227 kb on - strand, within OKGIIK_00535 at 121.227 kb on - strand, within OKGIIK_00535 at 121.227 kb on - strand, within OKGIIK_00535 at 121.227 kb on - strand, within OKGIIK_00535 at 121.227 kb on - strand, within OKGIIK_00535 at 121.227 kb on - strand, within OKGIIK_00535 at 121.227 kb on - strand, within OKGIIK_00535 at 121.227 kb on - strand, within OKGIIK_00535 at 121.227 kb on - strand, within OKGIIK_00535 at 121.227 kb on - strand, within OKGIIK_00535 at 121.227 kb on - strand, within OKGIIK_00535 at 121.228 kb on + strand, within OKGIIK_00535 at 121.229 kb on - strand, within OKGIIK_00535 at 121.229 kb on - strand, within OKGIIK_00535 at 121.229 kb on - strand, within OKGIIK_00535 at 121.229 kb on - strand, within OKGIIK_00535 at 121.473 kb on + strand, within OKGIIK_00535 at 121.473 kb on + strand, within OKGIIK_00535 at 121.474 kb on - strand, within OKGIIK_00535 at 121.474 kb on - strand, within OKGIIK_00535 at 121.474 kb on - strand, within OKGIIK_00535 at 121.474 kb on - strand, within OKGIIK_00535 at 121.501 kb on + strand at 121.502 kb on - strand at 121.502 kb on - strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.612 kb on + strand at 121.613 kb on - strand at 121.613 kb on - strand at 121.613 kb on - strand at 121.642 kb on + strand at 122.113 kb on + strand, within OKGIIK_00540 at 122.113 kb on + strand, within OKGIIK_00540 at 122.113 kb on + strand, within OKGIIK_00540 at 122.114 kb on - strand, within OKGIIK_00540 at 122.114 kb on - strand, within OKGIIK_00540 at 122.114 kb on - strand, within OKGIIK_00540 at 122.114 kb on - strand, within OKGIIK_00540 at 122.114 kb on - strand, within OKGIIK_00540 at 122.114 kb on - strand, within OKGIIK_00540 at 122.183 kb on - strand, within OKGIIK_00540 at 122.183 kb on - strand, within OKGIIK_00540 at 122.284 kb on + strand, within OKGIIK_00540 at 122.284 kb on + strand, within OKGIIK_00540 at 122.284 kb on + strand, within OKGIIK_00540 at 122.284 kb on + strand, within OKGIIK_00540 at 122.284 kb on + strand, within OKGIIK_00540 at 122.284 kb on + strand, within OKGIIK_00540 at 122.285 kb on - strand, within OKGIIK_00540 at 122.285 kb on - strand, within OKGIIK_00540 at 122.285 kb on - strand, within OKGIIK_00540 at 122.285 kb on - strand, within OKGIIK_00540 at 122.285 kb on - strand, within OKGIIK_00540 at 122.285 kb on - strand, within OKGIIK_00540 at 122.494 kb on + strand, within OKGIIK_00540 at 122.593 kb on + strand, within OKGIIK_00540 at 122.593 kb on + strand, within OKGIIK_00540 at 122.593 kb on + strand, within OKGIIK_00540 at 122.593 kb on + strand, within OKGIIK_00540 at 122.594 kb on - strand, within OKGIIK_00540 at 122.937 kb on + strand, within OKGIIK_00540 at 122.937 kb on + strand, within OKGIIK_00540 at 122.938 kb on - strand, within OKGIIK_00540 at 123.200 kb on - strand, within OKGIIK_00540 at 123.232 kb on + strand, within OKGIIK_00540 at 123.232 kb on + strand, within OKGIIK_00540 at 123.232 kb on + strand, within OKGIIK_00540 at 123.232 kb on + strand, within OKGIIK_00540 at 123.232 kb on + strand, within OKGIIK_00540 at 123.233 kb on - strand, within OKGIIK_00540 at 123.233 kb on - strand, within OKGIIK_00540 at 123.233 kb on - strand, within OKGIIK_00540 at 123.233 kb on - strand, within OKGIIK_00540 at 123.233 kb on - strand, within OKGIIK_00540 at 123.233 kb on - strand, within OKGIIK_00540 at 123.233 kb on - strand, within OKGIIK_00540 at 123.373 kb on - strand, within OKGIIK_00540 at 123.385 kb on + strand, within OKGIIK_00540 at 123.385 kb on + strand, within OKGIIK_00540 at 123.385 kb on + strand, within OKGIIK_00540 at 123.386 kb on - strand, within OKGIIK_00540 at 123.386 kb on - strand, within OKGIIK_00540 at 123.386 kb on - strand, within OKGIIK_00540 at 123.386 kb on - strand, within OKGIIK_00540 at 123.386 kb on - strand, within OKGIIK_00540 at 123.386 kb on - strand, within OKGIIK_00540 at 123.914 kb on + strand, within OKGIIK_00545 at 123.915 kb on - strand, within OKGIIK_00545 at 124.370 kb on - strand, within OKGIIK_00550 at 124.372 kb on - strand, within OKGIIK_00550 at 124.624 kb on + strand, within OKGIIK_00550 at 124.624 kb on + strand, within OKGIIK_00550 at 124.624 kb on + strand, within OKGIIK_00550 at 124.625 kb on - strand, within OKGIIK_00550 at 124.625 kb on - strand, within OKGIIK_00550
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.25 remove 120,630 - OKGIIK_00535 0.21 -0.5 120,860 + OKGIIK_00535 0.40 +0.4 120,860 + OKGIIK_00535 0.40 +2.4 120,860 + OKGIIK_00535 0.40 -2.0 120,861 - OKGIIK_00535 0.40 +1.3 120,861 - OKGIIK_00535 0.40 +0.2 120,861 - OKGIIK_00535 0.40 -1.5 120,861 - OKGIIK_00535 0.40 -0.5 120,878 + OKGIIK_00535 0.41 +2.0 120,879 - OKGIIK_00535 0.41 -2.0 120,879 - OKGIIK_00535 0.41 +3.3 120,879 - OKGIIK_00535 0.41 -2.0 121,010 + OKGIIK_00535 0.52 +1.5 121,011 - OKGIIK_00535 0.52 +0.2 121,226 + OKGIIK_00535 0.69 -0.0 121,226 + OKGIIK_00535 0.69 +0.6 121,226 + OKGIIK_00535 0.69 +1.7 121,226 + OKGIIK_00535 0.69 -1.9 121,226 + OKGIIK_00535 0.69 -0.5 121,226 + OKGIIK_00535 0.69 +0.1 121,226 + OKGIIK_00535 0.69 +2.6 121,226 + OKGIIK_00535 0.69 +1.1 121,226 + OKGIIK_00535 0.69 -0.0 121,226 + OKGIIK_00535 0.69 -0.0 121,226 + OKGIIK_00535 0.69 -0.0 121,226 + OKGIIK_00535 0.69 +0.1 121,226 + OKGIIK_00535 0.69 +0.4 121,226 + OKGIIK_00535 0.69 +1.1 121,226 + OKGIIK_00535 0.69 +0.8 121,226 + OKGIIK_00535 0.69 +2.3 121,226 + OKGIIK_00535 0.69 -0.0 121,226 + OKGIIK_00535 0.69 -0.6 121,226 + OKGIIK_00535 0.69 +2.1 121,227 - OKGIIK_00535 0.69 +0.3 121,227 - OKGIIK_00535 0.69 +1.0 121,227 - OKGIIK_00535 0.69 -1.9 121,227 - OKGIIK_00535 0.69 +2.0 121,227 - OKGIIK_00535 0.69 -0.3 121,227 - OKGIIK_00535 0.69 +0.4 121,227 - OKGIIK_00535 0.69 -0.0 121,227 - OKGIIK_00535 0.69 -1.2 121,227 - OKGIIK_00535 0.69 -0.0 121,227 - OKGIIK_00535 0.69 +1.2 121,227 - OKGIIK_00535 0.69 +0.8 121,227 - OKGIIK_00535 0.69 -0.4 121,227 - OKGIIK_00535 0.69 +1.6 121,227 - OKGIIK_00535 0.69 -0.0 121,227 - OKGIIK_00535 0.69 -2.0 121,228 + OKGIIK_00535 0.69 +2.5 121,229 - OKGIIK_00535 0.70 +1.2 121,229 - OKGIIK_00535 0.70 -1.4 121,229 - OKGIIK_00535 0.70 +1.2 121,229 - OKGIIK_00535 0.70 +0.7 121,473 + OKGIIK_00535 0.89 -0.1 121,473 + OKGIIK_00535 0.89 +0.5 121,474 - OKGIIK_00535 0.89 -0.4 121,474 - OKGIIK_00535 0.89 -0.4 121,474 - OKGIIK_00535 0.89 -0.4 121,474 - OKGIIK_00535 0.89 -1.7 121,501 + +1.5 121,502 - -1.0 121,502 - -1.4 121,505 + +0.3 121,505 + +0.5 121,505 + -0.5 121,505 + +0.2 121,505 + +1.5 121,505 + +2.3 121,505 + +0.6 121,505 + +0.5 121,505 + +0.5 121,505 + +1.0 121,505 + +2.6 121,505 + +2.5 121,505 + -0.3 121,505 + -1.4 121,505 + +1.6 121,505 + +0.3 121,505 + -1.0 121,505 + -2.0 121,505 + -0.3 121,505 + -0.0 121,505 + -1.6 121,505 + -0.0 121,505 + -0.0 121,505 + +1.0 121,505 + -0.2 121,505 + +0.5 121,505 + +0.8 121,505 + -0.2 121,505 + +0.2 121,505 + -0.9 121,505 + -3.3 121,505 + -1.3 121,505 + -0.5 121,505 + -1.2 121,505 + -1.0 121,505 + +1.4 121,505 + -0.6 121,505 + -1.2 121,506 - +0.1 121,506 - +1.4 121,506 - +0.2 121,506 - +0.0 121,506 - +1.8 121,506 - +0.6 121,506 - -0.9 121,506 - +2.8 121,506 - -2.0 121,506 - -1.3 121,506 - +0.6 121,506 - +0.5 121,506 - +0.6 121,506 - +0.4 121,506 - -0.5 121,506 - +1.0 121,506 - +0.1 121,506 - -0.0 121,506 - +0.4 121,506 - -1.2 121,506 - +1.0 121,506 - +0.5 121,506 - +0.5 121,506 - +1.2 121,506 - +1.0 121,506 - +1.2 121,506 - -0.5 121,506 - -0.4 121,612 + -0.9 121,613 - +0.5 121,613 - -0.0 121,613 - -1.6 121,642 + -0.4 122,113 + OKGIIK_00540 0.23 +0.5 122,113 + OKGIIK_00540 0.23 +0.7 122,113 + OKGIIK_00540 0.23 -0.3 122,114 - OKGIIK_00540 0.23 +1.0 122,114 - OKGIIK_00540 0.23 +1.0 122,114 - OKGIIK_00540 0.23 +1.8 122,114 - OKGIIK_00540 0.23 +1.2 122,114 - OKGIIK_00540 0.23 -2.2 122,114 - OKGIIK_00540 0.23 +1.2 122,183 - OKGIIK_00540 0.27 +1.4 122,183 - OKGIIK_00540 0.27 +0.0 122,284 + OKGIIK_00540 0.31 -0.2 122,284 + OKGIIK_00540 0.31 +1.4 122,284 + OKGIIK_00540 0.31 -0.4 122,284 + OKGIIK_00540 0.31 -1.9 122,284 + OKGIIK_00540 0.31 +1.3 122,284 + OKGIIK_00540 0.31 +1.0 122,285 - OKGIIK_00540 0.31 -0.0 122,285 - OKGIIK_00540 0.31 +0.2 122,285 - OKGIIK_00540 0.31 +0.4 122,285 - OKGIIK_00540 0.31 +0.6 122,285 - OKGIIK_00540 0.31 +0.1 122,285 - OKGIIK_00540 0.31 +0.6 122,494 + OKGIIK_00540 0.41 +0.5 122,593 + OKGIIK_00540 0.46 +2.3 122,593 + OKGIIK_00540 0.46 +1.0 122,593 + OKGIIK_00540 0.46 -2.4 122,593 + OKGIIK_00540 0.46 -0.3 122,594 - OKGIIK_00540 0.46 -0.9 122,937 + OKGIIK_00540 0.61 +0.1 122,937 + OKGIIK_00540 0.61 +0.6 122,938 - OKGIIK_00540 0.61 -0.0 123,200 - OKGIIK_00540 0.73 -0.7 123,232 + OKGIIK_00540 0.75 +1.0 123,232 + OKGIIK_00540 0.75 +0.0 123,232 + OKGIIK_00540 0.75 +0.2 123,232 + OKGIIK_00540 0.75 +2.1 123,232 + OKGIIK_00540 0.75 +0.1 123,233 - OKGIIK_00540 0.75 +0.1 123,233 - OKGIIK_00540 0.75 -0.5 123,233 - OKGIIK_00540 0.75 +0.6 123,233 - OKGIIK_00540 0.75 +0.4 123,233 - OKGIIK_00540 0.75 -1.0 123,233 - OKGIIK_00540 0.75 -0.2 123,233 - OKGIIK_00540 0.75 +1.4 123,373 - OKGIIK_00540 0.81 -0.4 123,385 + OKGIIK_00540 0.82 -0.0 123,385 + OKGIIK_00540 0.82 +0.2 123,385 + OKGIIK_00540 0.82 -0.4 123,386 - OKGIIK_00540 0.82 -0.0 123,386 - OKGIIK_00540 0.82 +0.9 123,386 - OKGIIK_00540 0.82 -0.4 123,386 - OKGIIK_00540 0.82 -0.3 123,386 - OKGIIK_00540 0.82 +2.0 123,386 - OKGIIK_00540 0.82 -0.0 123,914 + OKGIIK_00545 0.48 -0.0 123,915 - OKGIIK_00545 0.48 -0.3 124,370 - OKGIIK_00550 0.13 +0.4 124,372 - OKGIIK_00550 0.14 -2.2 124,624 + OKGIIK_00550 0.50 +2.5 124,624 + OKGIIK_00550 0.50 +0.5 124,624 + OKGIIK_00550 0.50 -1.0 124,625 - OKGIIK_00550 0.50 +0.3 124,625 - OKGIIK_00550 0.50 +1.2
Or see this region's nucleotide sequence