Experiment: R2A_PIPES pH 4.25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_00525 and OKGIIK_00530 overlap by 4 nucleotides OKGIIK_00530 and OKGIIK_00535 overlap by 4 nucleotides OKGIIK_00535 and OKGIIK_00540 overlap by 4 nucleotides
OKGIIK_00525: OKGIIK_00525 - PEROXIDASE-4 domain-containing protein, at 118,870 to 119,607
_00525
OKGIIK_00530: OKGIIK_00530 - hypothetical protein, at 119,604 to 120,368
_00530
OKGIIK_00535: OKGIIK_00535 - Pvc16-N domain-containing protein, at 120,365 to 121,606
_00535
OKGIIK_00540: OKGIIK_00540 - AAA family ATPase, at 121,603 to 123,777
_00540
Position (kb) 120
121
122 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 119.524 kb on + strand, within OKGIIK_00525 at 119.524 kb on + strand, within OKGIIK_00525 at 119.524 kb on + strand, within OKGIIK_00525 at 119.524 kb on + strand, within OKGIIK_00525 at 119.524 kb on + strand, within OKGIIK_00525 at 119.524 kb on + strand, within OKGIIK_00525 at 119.524 kb on + strand, within OKGIIK_00525 at 119.524 kb on + strand, within OKGIIK_00525 at 119.524 kb on + strand, within OKGIIK_00525 at 119.524 kb on + strand, within OKGIIK_00525 at 119.525 kb on - strand, within OKGIIK_00525 at 119.525 kb on - strand, within OKGIIK_00525 at 119.525 kb on - strand, within OKGIIK_00525 at 119.525 kb on - strand, within OKGIIK_00525 at 119.525 kb on - strand, within OKGIIK_00525 at 119.525 kb on - strand, within OKGIIK_00525 at 119.531 kb on - strand, within OKGIIK_00525 at 119.531 kb on - strand, within OKGIIK_00525 at 119.584 kb on + strand at 119.584 kb on + strand at 119.584 kb on + strand at 119.585 kb on - strand at 119.585 kb on - strand at 119.904 kb on - strand, within OKGIIK_00530 at 119.911 kb on + strand, within OKGIIK_00530 at 119.912 kb on - strand, within OKGIIK_00530 at 119.912 kb on - strand, within OKGIIK_00530 at 120.262 kb on + strand, within OKGIIK_00530 at 120.262 kb on + strand, within OKGIIK_00530 at 120.262 kb on + strand, within OKGIIK_00530 at 120.262 kb on + strand, within OKGIIK_00530 at 120.262 kb on + strand, within OKGIIK_00530 at 120.262 kb on + strand, within OKGIIK_00530 at 120.263 kb on - strand, within OKGIIK_00530 at 120.263 kb on - strand, within OKGIIK_00530 at 120.333 kb on + strand at 120.334 kb on - strand at 120.334 kb on - strand at 120.530 kb on + strand, within OKGIIK_00535 at 120.531 kb on - strand, within OKGIIK_00535 at 120.531 kb on - strand, within OKGIIK_00535 at 120.531 kb on - strand, within OKGIIK_00535 at 120.630 kb on - strand, within OKGIIK_00535 at 120.860 kb on + strand, within OKGIIK_00535 at 120.860 kb on + strand, within OKGIIK_00535 at 120.860 kb on + strand, within OKGIIK_00535 at 120.861 kb on - strand, within OKGIIK_00535 at 120.861 kb on - strand, within OKGIIK_00535 at 120.861 kb on - strand, within OKGIIK_00535 at 120.861 kb on - strand, within OKGIIK_00535 at 120.878 kb on + strand, within OKGIIK_00535 at 120.879 kb on - strand, within OKGIIK_00535 at 120.879 kb on - strand, within OKGIIK_00535 at 120.879 kb on - strand, within OKGIIK_00535 at 121.010 kb on + strand, within OKGIIK_00535 at 121.011 kb on - strand, within OKGIIK_00535 at 121.226 kb on + strand, within OKGIIK_00535 at 121.226 kb on + strand, within OKGIIK_00535 at 121.226 kb on + strand, within OKGIIK_00535 at 121.226 kb on + strand, within OKGIIK_00535 at 121.226 kb on + strand, within OKGIIK_00535 at 121.226 kb on + strand, within OKGIIK_00535 at 121.226 kb on + strand, within OKGIIK_00535 at 121.226 kb on + strand, within OKGIIK_00535 at 121.226 kb on + strand, within OKGIIK_00535 at 121.226 kb on + strand, within OKGIIK_00535 at 121.226 kb on + strand, within OKGIIK_00535 at 121.226 kb on + strand, within OKGIIK_00535 at 121.226 kb on + strand, within OKGIIK_00535 at 121.226 kb on + strand, within OKGIIK_00535 at 121.226 kb on + strand, within OKGIIK_00535 at 121.226 kb on + strand, within OKGIIK_00535 at 121.226 kb on + strand, within OKGIIK_00535 at 121.226 kb on + strand, within OKGIIK_00535 at 121.226 kb on + strand, within OKGIIK_00535 at 121.227 kb on - strand, within OKGIIK_00535 at 121.227 kb on - strand, within OKGIIK_00535 at 121.227 kb on - strand, within OKGIIK_00535 at 121.227 kb on - strand, within OKGIIK_00535 at 121.227 kb on - strand, within OKGIIK_00535 at 121.227 kb on - strand, within OKGIIK_00535 at 121.227 kb on - strand, within OKGIIK_00535 at 121.227 kb on - strand, within OKGIIK_00535 at 121.227 kb on - strand, within OKGIIK_00535 at 121.227 kb on - strand, within OKGIIK_00535 at 121.227 kb on - strand, within OKGIIK_00535 at 121.227 kb on - strand, within OKGIIK_00535 at 121.227 kb on - strand, within OKGIIK_00535 at 121.227 kb on - strand, within OKGIIK_00535 at 121.227 kb on - strand, within OKGIIK_00535 at 121.228 kb on + strand, within OKGIIK_00535 at 121.229 kb on - strand, within OKGIIK_00535 at 121.229 kb on - strand, within OKGIIK_00535 at 121.229 kb on - strand, within OKGIIK_00535 at 121.229 kb on - strand, within OKGIIK_00535 at 121.473 kb on + strand, within OKGIIK_00535 at 121.473 kb on + strand, within OKGIIK_00535 at 121.474 kb on - strand, within OKGIIK_00535 at 121.474 kb on - strand, within OKGIIK_00535 at 121.474 kb on - strand, within OKGIIK_00535 at 121.474 kb on - strand, within OKGIIK_00535 at 121.501 kb on + strand at 121.502 kb on - strand at 121.502 kb on - strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.505 kb on + strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.506 kb on - strand at 121.612 kb on + strand at 121.613 kb on - strand at 121.613 kb on - strand at 121.613 kb on - strand at 121.642 kb on + strand at 122.113 kb on + strand, within OKGIIK_00540 at 122.113 kb on + strand, within OKGIIK_00540 at 122.113 kb on + strand, within OKGIIK_00540 at 122.114 kb on - strand, within OKGIIK_00540 at 122.114 kb on - strand, within OKGIIK_00540 at 122.114 kb on - strand, within OKGIIK_00540 at 122.114 kb on - strand, within OKGIIK_00540 at 122.114 kb on - strand, within OKGIIK_00540 at 122.114 kb on - strand, within OKGIIK_00540 at 122.183 kb on - strand, within OKGIIK_00540 at 122.183 kb on - strand, within OKGIIK_00540 at 122.284 kb on + strand, within OKGIIK_00540 at 122.284 kb on + strand, within OKGIIK_00540 at 122.284 kb on + strand, within OKGIIK_00540 at 122.284 kb on + strand, within OKGIIK_00540 at 122.284 kb on + strand, within OKGIIK_00540 at 122.284 kb on + strand, within OKGIIK_00540 at 122.285 kb on - strand, within OKGIIK_00540 at 122.285 kb on - strand, within OKGIIK_00540 at 122.285 kb on - strand, within OKGIIK_00540 at 122.285 kb on - strand, within OKGIIK_00540 at 122.285 kb on - strand, within OKGIIK_00540 at 122.285 kb on - strand, within OKGIIK_00540 at 122.494 kb on + strand, within OKGIIK_00540 at 122.593 kb on + strand, within OKGIIK_00540 at 122.593 kb on + strand, within OKGIIK_00540 at 122.593 kb on + strand, within OKGIIK_00540 at 122.593 kb on + strand, within OKGIIK_00540 at 122.594 kb on - strand, within OKGIIK_00540
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4.25 remove 119,524 + OKGIIK_00525 0.89 -1.0 119,524 + OKGIIK_00525 0.89 +2.0 119,524 + OKGIIK_00525 0.89 -0.9 119,524 + OKGIIK_00525 0.89 +1.0 119,524 + OKGIIK_00525 0.89 +1.0 119,524 + OKGIIK_00525 0.89 -0.0 119,524 + OKGIIK_00525 0.89 +0.5 119,524 + OKGIIK_00525 0.89 -0.6 119,524 + OKGIIK_00525 0.89 +0.3 119,524 + OKGIIK_00525 0.89 +1.0 119,525 - OKGIIK_00525 0.89 -0.2 119,525 - OKGIIK_00525 0.89 +2.0 119,525 - OKGIIK_00525 0.89 +0.1 119,525 - OKGIIK_00525 0.89 -0.6 119,525 - OKGIIK_00525 0.89 -0.6 119,525 - OKGIIK_00525 0.89 +0.4 119,531 - OKGIIK_00525 0.90 +0.3 119,531 - OKGIIK_00525 0.90 +0.6 119,584 + -1.2 119,584 + -0.0 119,584 + +2.5 119,585 - +1.0 119,585 - -1.6 119,904 - OKGIIK_00530 0.39 +2.1 119,911 + OKGIIK_00530 0.40 +0.3 119,912 - OKGIIK_00530 0.40 +0.1 119,912 - OKGIIK_00530 0.40 -2.7 120,262 + OKGIIK_00530 0.86 +0.1 120,262 + OKGIIK_00530 0.86 +0.7 120,262 + OKGIIK_00530 0.86 -2.2 120,262 + OKGIIK_00530 0.86 +1.0 120,262 + OKGIIK_00530 0.86 +1.1 120,262 + OKGIIK_00530 0.86 +1.0 120,263 - OKGIIK_00530 0.86 +0.4 120,263 - OKGIIK_00530 0.86 +0.1 120,333 + +1.5 120,334 - +0.1 120,334 - +0.3 120,530 + OKGIIK_00535 0.13 -0.6 120,531 - OKGIIK_00535 0.13 -1.2 120,531 - OKGIIK_00535 0.13 +1.0 120,531 - OKGIIK_00535 0.13 -0.6 120,630 - OKGIIK_00535 0.21 -0.5 120,860 + OKGIIK_00535 0.40 +0.4 120,860 + OKGIIK_00535 0.40 +2.4 120,860 + OKGIIK_00535 0.40 -2.0 120,861 - OKGIIK_00535 0.40 +1.3 120,861 - OKGIIK_00535 0.40 +0.2 120,861 - OKGIIK_00535 0.40 -1.5 120,861 - OKGIIK_00535 0.40 -0.5 120,878 + OKGIIK_00535 0.41 +2.0 120,879 - OKGIIK_00535 0.41 -2.0 120,879 - OKGIIK_00535 0.41 +3.3 120,879 - OKGIIK_00535 0.41 -2.0 121,010 + OKGIIK_00535 0.52 +1.5 121,011 - OKGIIK_00535 0.52 +0.2 121,226 + OKGIIK_00535 0.69 -0.0 121,226 + OKGIIK_00535 0.69 +0.6 121,226 + OKGIIK_00535 0.69 +1.7 121,226 + OKGIIK_00535 0.69 -1.9 121,226 + OKGIIK_00535 0.69 -0.5 121,226 + OKGIIK_00535 0.69 +0.1 121,226 + OKGIIK_00535 0.69 +2.6 121,226 + OKGIIK_00535 0.69 +1.1 121,226 + OKGIIK_00535 0.69 -0.0 121,226 + OKGIIK_00535 0.69 -0.0 121,226 + OKGIIK_00535 0.69 -0.0 121,226 + OKGIIK_00535 0.69 +0.1 121,226 + OKGIIK_00535 0.69 +0.4 121,226 + OKGIIK_00535 0.69 +1.1 121,226 + OKGIIK_00535 0.69 +0.8 121,226 + OKGIIK_00535 0.69 +2.3 121,226 + OKGIIK_00535 0.69 -0.0 121,226 + OKGIIK_00535 0.69 -0.6 121,226 + OKGIIK_00535 0.69 +2.1 121,227 - OKGIIK_00535 0.69 +0.3 121,227 - OKGIIK_00535 0.69 +1.0 121,227 - OKGIIK_00535 0.69 -1.9 121,227 - OKGIIK_00535 0.69 +2.0 121,227 - OKGIIK_00535 0.69 -0.3 121,227 - OKGIIK_00535 0.69 +0.4 121,227 - OKGIIK_00535 0.69 -0.0 121,227 - OKGIIK_00535 0.69 -1.2 121,227 - OKGIIK_00535 0.69 -0.0 121,227 - OKGIIK_00535 0.69 +1.2 121,227 - OKGIIK_00535 0.69 +0.8 121,227 - OKGIIK_00535 0.69 -0.4 121,227 - OKGIIK_00535 0.69 +1.6 121,227 - OKGIIK_00535 0.69 -0.0 121,227 - OKGIIK_00535 0.69 -2.0 121,228 + OKGIIK_00535 0.69 +2.5 121,229 - OKGIIK_00535 0.70 +1.2 121,229 - OKGIIK_00535 0.70 -1.4 121,229 - OKGIIK_00535 0.70 +1.2 121,229 - OKGIIK_00535 0.70 +0.7 121,473 + OKGIIK_00535 0.89 -0.1 121,473 + OKGIIK_00535 0.89 +0.5 121,474 - OKGIIK_00535 0.89 -0.4 121,474 - OKGIIK_00535 0.89 -0.4 121,474 - OKGIIK_00535 0.89 -0.4 121,474 - OKGIIK_00535 0.89 -1.7 121,501 + +1.5 121,502 - -1.0 121,502 - -1.4 121,505 + +0.3 121,505 + +0.5 121,505 + -0.5 121,505 + +0.2 121,505 + +1.5 121,505 + +2.3 121,505 + +0.6 121,505 + +0.5 121,505 + +0.5 121,505 + +1.0 121,505 + +2.6 121,505 + +2.5 121,505 + -0.3 121,505 + -1.4 121,505 + +1.6 121,505 + +0.3 121,505 + -1.0 121,505 + -2.0 121,505 + -0.3 121,505 + -0.0 121,505 + -1.6 121,505 + -0.0 121,505 + -0.0 121,505 + +1.0 121,505 + -0.2 121,505 + +0.5 121,505 + +0.8 121,505 + -0.2 121,505 + +0.2 121,505 + -0.9 121,505 + -3.3 121,505 + -1.3 121,505 + -0.5 121,505 + -1.2 121,505 + -1.0 121,505 + +1.4 121,505 + -0.6 121,505 + -1.2 121,506 - +0.1 121,506 - +1.4 121,506 - +0.2 121,506 - +0.0 121,506 - +1.8 121,506 - +0.6 121,506 - -0.9 121,506 - +2.8 121,506 - -2.0 121,506 - -1.3 121,506 - +0.6 121,506 - +0.5 121,506 - +0.6 121,506 - +0.4 121,506 - -0.5 121,506 - +1.0 121,506 - +0.1 121,506 - -0.0 121,506 - +0.4 121,506 - -1.2 121,506 - +1.0 121,506 - +0.5 121,506 - +0.5 121,506 - +1.2 121,506 - +1.0 121,506 - +1.2 121,506 - -0.5 121,506 - -0.4 121,612 + -0.9 121,613 - +0.5 121,613 - -0.0 121,613 - -1.6 121,642 + -0.4 122,113 + OKGIIK_00540 0.23 +0.5 122,113 + OKGIIK_00540 0.23 +0.7 122,113 + OKGIIK_00540 0.23 -0.3 122,114 - OKGIIK_00540 0.23 +1.0 122,114 - OKGIIK_00540 0.23 +1.0 122,114 - OKGIIK_00540 0.23 +1.8 122,114 - OKGIIK_00540 0.23 +1.2 122,114 - OKGIIK_00540 0.23 -2.2 122,114 - OKGIIK_00540 0.23 +1.2 122,183 - OKGIIK_00540 0.27 +1.4 122,183 - OKGIIK_00540 0.27 +0.0 122,284 + OKGIIK_00540 0.31 -0.2 122,284 + OKGIIK_00540 0.31 +1.4 122,284 + OKGIIK_00540 0.31 -0.4 122,284 + OKGIIK_00540 0.31 -1.9 122,284 + OKGIIK_00540 0.31 +1.3 122,284 + OKGIIK_00540 0.31 +1.0 122,285 - OKGIIK_00540 0.31 -0.0 122,285 - OKGIIK_00540 0.31 +0.2 122,285 - OKGIIK_00540 0.31 +0.4 122,285 - OKGIIK_00540 0.31 +0.6 122,285 - OKGIIK_00540 0.31 +0.1 122,285 - OKGIIK_00540 0.31 +0.6 122,494 + OKGIIK_00540 0.41 +0.5 122,593 + OKGIIK_00540 0.46 +2.3 122,593 + OKGIIK_00540 0.46 +1.0 122,593 + OKGIIK_00540 0.46 -2.4 122,593 + OKGIIK_00540 0.46 -0.3 122,594 - OKGIIK_00540 0.46 -0.9
Or see this region's nucleotide sequence