Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06979

Experiment: NL-CCM, start OD=0.3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_06978 and MPMX19_06979 are separated by 118 nucleotidesMPMX19_06979 and MPMX19_06980 are separated by 7 nucleotides MPMX19_06978: MPMX19_06978 - Alpha-keto acid-binding periplasmic protein TakP, at 258,544 to 259,629 _06978 MPMX19_06979: MPMX19_06979 - hypothetical protein, at 259,748 to 260,395 _06979 MPMX19_06980: MPMX19_06980 - hypothetical protein, at 260,403 to 262,355 _06980 Position (kb) 259 260 261Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 258.835 kb on + strand, within MPMX19_06978at 258.835 kb on + strand, within MPMX19_06978at 258.835 kb on + strand, within MPMX19_06978at 258.835 kb on + strand, within MPMX19_06978at 258.835 kb on + strand, within MPMX19_06978at 258.835 kb on + strand, within MPMX19_06978at 258.835 kb on + strand, within MPMX19_06978at 258.836 kb on - strand, within MPMX19_06978at 258.836 kb on - strand, within MPMX19_06978at 258.836 kb on - strand, within MPMX19_06978at 258.836 kb on - strand, within MPMX19_06978at 258.836 kb on - strand, within MPMX19_06978at 258.836 kb on - strand, within MPMX19_06978at 258.838 kb on + strand, within MPMX19_06978at 258.838 kb on + strand, within MPMX19_06978at 258.838 kb on + strand, within MPMX19_06978at 258.838 kb on + strand, within MPMX19_06978at 258.838 kb on + strand, within MPMX19_06978at 258.838 kb on + strand, within MPMX19_06978at 258.838 kb on + strand, within MPMX19_06978at 258.838 kb on + strand, within MPMX19_06978at 258.839 kb on - strand, within MPMX19_06978at 258.839 kb on - strand, within MPMX19_06978at 258.839 kb on - strand, within MPMX19_06978at 258.839 kb on - strand, within MPMX19_06978at 258.841 kb on + strand, within MPMX19_06978at 258.841 kb on + strand, within MPMX19_06978at 258.841 kb on + strand, within MPMX19_06978at 258.841 kb on + strand, within MPMX19_06978at 258.841 kb on + strand, within MPMX19_06978at 258.841 kb on + strand, within MPMX19_06978at 258.841 kb on + strand, within MPMX19_06978at 258.841 kb on + strand, within MPMX19_06978at 258.841 kb on + strand, within MPMX19_06978at 258.841 kb on + strand, within MPMX19_06978at 258.841 kb on + strand, within MPMX19_06978at 258.841 kb on + strand, within MPMX19_06978at 258.841 kb on + strand, within MPMX19_06978at 258.842 kb on - strand, within MPMX19_06978at 258.842 kb on - strand, within MPMX19_06978at 258.842 kb on - strand, within MPMX19_06978at 258.842 kb on - strand, within MPMX19_06978at 258.842 kb on - strand, within MPMX19_06978at 258.842 kb on - strand, within MPMX19_06978at 258.842 kb on - strand, within MPMX19_06978at 258.842 kb on - strand, within MPMX19_06978at 258.842 kb on - strand, within MPMX19_06978at 258.842 kb on - strand, within MPMX19_06978at 258.842 kb on - strand, within MPMX19_06978at 258.842 kb on - strand, within MPMX19_06978at 258.922 kb on + strand, within MPMX19_06978at 258.922 kb on + strand, within MPMX19_06978at 258.922 kb on + strand, within MPMX19_06978at 258.923 kb on - strand, within MPMX19_06978at 258.958 kb on + strand, within MPMX19_06978at 258.958 kb on + strand, within MPMX19_06978at 258.958 kb on + strand, within MPMX19_06978at 258.959 kb on - strand, within MPMX19_06978at 258.959 kb on - strand, within MPMX19_06978at 258.959 kb on - strand, within MPMX19_06978at 259.144 kb on + strand, within MPMX19_06978at 259.144 kb on + strand, within MPMX19_06978at 259.145 kb on - strand, within MPMX19_06978at 259.145 kb on - strand, within MPMX19_06978at 259.195 kb on + strand, within MPMX19_06978at 259.196 kb on - strand, within MPMX19_06978at 259.196 kb on - strand, within MPMX19_06978at 259.196 kb on - strand, within MPMX19_06978at 259.196 kb on - strand, within MPMX19_06978at 259.219 kb on + strand, within MPMX19_06978at 259.219 kb on + strand, within MPMX19_06978at 259.220 kb on - strand, within MPMX19_06978at 259.237 kb on + strand, within MPMX19_06978at 259.237 kb on + strand, within MPMX19_06978at 259.237 kb on + strand, within MPMX19_06978at 259.237 kb on + strand, within MPMX19_06978at 259.237 kb on + strand, within MPMX19_06978at 259.237 kb on + strand, within MPMX19_06978at 259.237 kb on + strand, within MPMX19_06978at 259.237 kb on + strand, within MPMX19_06978at 259.238 kb on - strand, within MPMX19_06978at 259.238 kb on - strand, within MPMX19_06978at 259.238 kb on - strand, within MPMX19_06978at 259.238 kb on - strand, within MPMX19_06978at 259.238 kb on - strand, within MPMX19_06978at 259.238 kb on - strand, within MPMX19_06978at 259.238 kb on - strand, within MPMX19_06978at 259.238 kb on - strand, within MPMX19_06978at 259.238 kb on - strand, within MPMX19_06978at 259.238 kb on - strand, within MPMX19_06978at 259.238 kb on - strand, within MPMX19_06978at 259.238 kb on - strand, within MPMX19_06978at 259.238 kb on - strand, within MPMX19_06978at 259.238 kb on - strand, within MPMX19_06978at 259.238 kb on - strand, within MPMX19_06978at 259.238 kb on - strand, within MPMX19_06978at 259.240 kb on + strand, within MPMX19_06978at 259.241 kb on - strand, within MPMX19_06978at 259.241 kb on - strand, within MPMX19_06978at 259.321 kb on + strand, within MPMX19_06978at 259.379 kb on - strand, within MPMX19_06978at 259.489 kb on + strand, within MPMX19_06978at 259.489 kb on + strand, within MPMX19_06978at 259.490 kb on - strand, within MPMX19_06978at 259.490 kb on - strand, within MPMX19_06978at 259.531 kb on + strandat 259.532 kb on - strandat 259.588 kb on + strandat 259.588 kb on + strandat 259.588 kb on + strandat 259.589 kb on - strandat 259.589 kb on - strandat 259.594 kb on + strandat 259.594 kb on + strandat 259.595 kb on - strandat 259.776 kb on + strandat 260.135 kb on + strand, within MPMX19_06979at 260.135 kb on + strand, within MPMX19_06979at 260.135 kb on + strand, within MPMX19_06979at 260.135 kb on + strand, within MPMX19_06979at 260.136 kb on - strand, within MPMX19_06979at 260.136 kb on - strand, within MPMX19_06979at 260.136 kb on - strand, within MPMX19_06979at 260.393 kb on + strandat 260.493 kb on + strandat 260.493 kb on + strandat 260.493 kb on + strandat 260.493 kb on + strandat 260.493 kb on + strandat 260.494 kb on - strandat 260.494 kb on - strandat 260.494 kb on - strandat 260.494 kb on - strandat 260.494 kb on - strandat 260.494 kb on - strandat 260.494 kb on - strandat 260.494 kb on - strandat 260.494 kb on - strandat 260.721 kb on + strand, within MPMX19_06980at 260.721 kb on + strand, within MPMX19_06980at 260.721 kb on + strand, within MPMX19_06980at 260.721 kb on + strand, within MPMX19_06980at 260.722 kb on - strand, within MPMX19_06980at 260.722 kb on - strand, within MPMX19_06980at 260.863 kb on - strand, within MPMX19_06980at 260.863 kb on - strand, within MPMX19_06980at 260.863 kb on - strand, within MPMX19_06980at 260.863 kb on - strand, within MPMX19_06980at 260.863 kb on - strand, within MPMX19_06980at 260.970 kb on + strand, within MPMX19_06980at 261.090 kb on + strand, within MPMX19_06980at 261.090 kb on + strand, within MPMX19_06980at 261.090 kb on + strand, within MPMX19_06980at 261.090 kb on + strand, within MPMX19_06980at 261.090 kb on + strand, within MPMX19_06980at 261.090 kb on + strand, within MPMX19_06980at 261.090 kb on + strand, within MPMX19_06980at 261.090 kb on + strand, within MPMX19_06980at 261.090 kb on + strand, within MPMX19_06980at 261.090 kb on + strand, within MPMX19_06980at 261.090 kb on + strand, within MPMX19_06980at 261.090 kb on + strand, within MPMX19_06980at 261.090 kb on + strand, within MPMX19_06980at 261.090 kb on + strand, within MPMX19_06980at 261.091 kb on - strand, within MPMX19_06980at 261.091 kb on - strand, within MPMX19_06980at 261.091 kb on - strand, within MPMX19_06980at 261.091 kb on - strand, within MPMX19_06980at 261.091 kb on - strand, within MPMX19_06980at 261.091 kb on - strand, within MPMX19_06980at 261.091 kb on - strand, within MPMX19_06980at 261.091 kb on - strand, within MPMX19_06980at 261.091 kb on - strand, within MPMX19_06980at 261.091 kb on - strand, within MPMX19_06980at 261.091 kb on - strand, within MPMX19_06980at 261.091 kb on - strand, within MPMX19_06980at 261.091 kb on - strand, within MPMX19_06980at 261.091 kb on - strand, within MPMX19_06980at 261.132 kb on + strand, within MPMX19_06980at 261.132 kb on + strand, within MPMX19_06980at 261.133 kb on - strand, within MPMX19_06980at 261.133 kb on - strand, within MPMX19_06980at 261.141 kb on + strand, within MPMX19_06980at 261.141 kb on + strand, within MPMX19_06980at 261.141 kb on + strand, within MPMX19_06980at 261.141 kb on + strand, within MPMX19_06980at 261.141 kb on + strand, within MPMX19_06980at 261.141 kb on + strand, within MPMX19_06980at 261.141 kb on + strand, within MPMX19_06980at 261.142 kb on - strand, within MPMX19_06980at 261.142 kb on - strand, within MPMX19_06980at 261.142 kb on - strand, within MPMX19_06980at 261.142 kb on - strand, within MPMX19_06980at 261.142 kb on - strand, within MPMX19_06980at 261.142 kb on - strand, within MPMX19_06980at 261.321 kb on + strand, within MPMX19_06980at 261.322 kb on - strand, within MPMX19_06980at 261.322 kb on - strand, within MPMX19_06980at 261.322 kb on - strand, within MPMX19_06980

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
remove
258,835 + MPMX19_06978 0.27 -0.9
258,835 + MPMX19_06978 0.27 -1.1
258,835 + MPMX19_06978 0.27 -0.7
258,835 + MPMX19_06978 0.27 -0.3
258,835 + MPMX19_06978 0.27 -0.8
258,835 + MPMX19_06978 0.27 -1.4
258,835 + MPMX19_06978 0.27 -0.7
258,836 - MPMX19_06978 0.27 -0.2
258,836 - MPMX19_06978 0.27 +0.3
258,836 - MPMX19_06978 0.27 -0.0
258,836 - MPMX19_06978 0.27 +0.1
258,836 - MPMX19_06978 0.27 +0.2
258,836 - MPMX19_06978 0.27 -0.2
258,838 + MPMX19_06978 0.27 -0.1
258,838 + MPMX19_06978 0.27 -2.5
258,838 + MPMX19_06978 0.27 -1.2
258,838 + MPMX19_06978 0.27 -1.2
258,838 + MPMX19_06978 0.27 -0.9
258,838 + MPMX19_06978 0.27 +0.5
258,838 + MPMX19_06978 0.27 +0.2
258,838 + MPMX19_06978 0.27 +0.0
258,839 - MPMX19_06978 0.27 +0.1
258,839 - MPMX19_06978 0.27 -1.4
258,839 - MPMX19_06978 0.27 +0.3
258,839 - MPMX19_06978 0.27 +0.3
258,841 + MPMX19_06978 0.27 +0.5
258,841 + MPMX19_06978 0.27 -0.1
258,841 + MPMX19_06978 0.27 +0.3
258,841 + MPMX19_06978 0.27 +0.5
258,841 + MPMX19_06978 0.27 +1.3
258,841 + MPMX19_06978 0.27 -0.7
258,841 + MPMX19_06978 0.27 +0.3
258,841 + MPMX19_06978 0.27 -0.8
258,841 + MPMX19_06978 0.27 -1.1
258,841 + MPMX19_06978 0.27 -0.2
258,841 + MPMX19_06978 0.27 -0.3
258,841 + MPMX19_06978 0.27 -0.1
258,841 + MPMX19_06978 0.27 +1.1
258,842 - MPMX19_06978 0.27 +2.7
258,842 - MPMX19_06978 0.27 +0.1
258,842 - MPMX19_06978 0.27 -1.2
258,842 - MPMX19_06978 0.27 -0.3
258,842 - MPMX19_06978 0.27 -0.1
258,842 - MPMX19_06978 0.27 +0.3
258,842 - MPMX19_06978 0.27 +0.9
258,842 - MPMX19_06978 0.27 -1.6
258,842 - MPMX19_06978 0.27 +0.2
258,842 - MPMX19_06978 0.27 -1.1
258,842 - MPMX19_06978 0.27 -1.4
258,842 - MPMX19_06978 0.27 -0.2
258,922 + MPMX19_06978 0.35 -1.4
258,922 + MPMX19_06978 0.35 +0.5
258,922 + MPMX19_06978 0.35 -1.7
258,923 - MPMX19_06978 0.35 -0.7
258,958 + MPMX19_06978 0.38 -1.6
258,958 + MPMX19_06978 0.38 -3.1
258,958 + MPMX19_06978 0.38 +0.8
258,959 - MPMX19_06978 0.38 -1.4
258,959 - MPMX19_06978 0.38 -0.1
258,959 - MPMX19_06978 0.38 +0.1
259,144 + MPMX19_06978 0.55 -0.7
259,144 + MPMX19_06978 0.55 -0.2
259,145 - MPMX19_06978 0.55 -0.9
259,145 - MPMX19_06978 0.55 -0.9
259,195 + MPMX19_06978 0.60 +0.5
259,196 - MPMX19_06978 0.60 +1.5
259,196 - MPMX19_06978 0.60 -0.4
259,196 - MPMX19_06978 0.60 -0.0
259,196 - MPMX19_06978 0.60 +0.1
259,219 + MPMX19_06978 0.62 -1.8
259,219 + MPMX19_06978 0.62 -2.2
259,220 - MPMX19_06978 0.62 -0.1
259,237 + MPMX19_06978 0.64 +1.8
259,237 + MPMX19_06978 0.64 -0.7
259,237 + MPMX19_06978 0.64 +1.1
259,237 + MPMX19_06978 0.64 +0.3
259,237 + MPMX19_06978 0.64 -0.2
259,237 + MPMX19_06978 0.64 +1.3
259,237 + MPMX19_06978 0.64 +0.5
259,237 + MPMX19_06978 0.64 +1.1
259,238 - MPMX19_06978 0.64 -0.1
259,238 - MPMX19_06978 0.64 -0.6
259,238 - MPMX19_06978 0.64 -1.4
259,238 - MPMX19_06978 0.64 +0.2
259,238 - MPMX19_06978 0.64 +1.0
259,238 - MPMX19_06978 0.64 -0.5
259,238 - MPMX19_06978 0.64 -1.4
259,238 - MPMX19_06978 0.64 +1.0
259,238 - MPMX19_06978 0.64 -0.3
259,238 - MPMX19_06978 0.64 -0.7
259,238 - MPMX19_06978 0.64 -1.1
259,238 - MPMX19_06978 0.64 -1.1
259,238 - MPMX19_06978 0.64 +0.5
259,238 - MPMX19_06978 0.64 -0.5
259,238 - MPMX19_06978 0.64 +0.1
259,238 - MPMX19_06978 0.64 -0.2
259,240 + MPMX19_06978 0.64 -0.2
259,241 - MPMX19_06978 0.64 -0.5
259,241 - MPMX19_06978 0.64 +1.7
259,321 + MPMX19_06978 0.72 +0.5
259,379 - MPMX19_06978 0.77 -1.4
259,489 + MPMX19_06978 0.87 +0.6
259,489 + MPMX19_06978 0.87 -0.6
259,490 - MPMX19_06978 0.87 +0.1
259,490 - MPMX19_06978 0.87 -2.1
259,531 + -0.4
259,532 - +0.1
259,588 + -1.1
259,588 + -0.5
259,588 + +0.2
259,589 - +0.1
259,589 - +1.3
259,594 + -0.1
259,594 + -1.1
259,595 - -1.3
259,776 + -0.6
260,135 + MPMX19_06979 0.60 -0.5
260,135 + MPMX19_06979 0.60 -1.1
260,135 + MPMX19_06979 0.60 +0.3
260,135 + MPMX19_06979 0.60 -1.2
260,136 - MPMX19_06979 0.60 +0.6
260,136 - MPMX19_06979 0.60 -1.8
260,136 - MPMX19_06979 0.60 +0.1
260,393 + -0.1
260,493 + -1.8
260,493 + +1.3
260,493 + -0.5
260,493 + -1.2
260,493 + -0.1
260,494 - -0.0
260,494 - -0.7
260,494 - -0.9
260,494 - -0.7
260,494 - +1.1
260,494 - -0.9
260,494 - -1.8
260,494 - -0.2
260,494 - -1.8
260,721 + MPMX19_06980 0.16 -0.1
260,721 + MPMX19_06980 0.16 +0.6
260,721 + MPMX19_06980 0.16 +0.5
260,721 + MPMX19_06980 0.16 -1.2
260,722 - MPMX19_06980 0.16 -0.6
260,722 - MPMX19_06980 0.16 -0.2
260,863 - MPMX19_06980 0.24 -1.8
260,863 - MPMX19_06980 0.24 -0.9
260,863 - MPMX19_06980 0.24 -1.3
260,863 - MPMX19_06980 0.24 -0.6
260,863 - MPMX19_06980 0.24 -0.2
260,970 + MPMX19_06980 0.29 -1.1
261,090 + MPMX19_06980 0.35 -0.4
261,090 + MPMX19_06980 0.35 +0.0
261,090 + MPMX19_06980 0.35 -1.7
261,090 + MPMX19_06980 0.35 -0.6
261,090 + MPMX19_06980 0.35 +0.4
261,090 + MPMX19_06980 0.35 -1.1
261,090 + MPMX19_06980 0.35 -0.3
261,090 + MPMX19_06980 0.35 -1.5
261,090 + MPMX19_06980 0.35 -0.8
261,090 + MPMX19_06980 0.35 +0.1
261,090 + MPMX19_06980 0.35 -1.2
261,090 + MPMX19_06980 0.35 -0.3
261,090 + MPMX19_06980 0.35 -0.2
261,090 + MPMX19_06980 0.35 +0.0
261,091 - MPMX19_06980 0.35 -1.0
261,091 - MPMX19_06980 0.35 -0.5
261,091 - MPMX19_06980 0.35 -0.6
261,091 - MPMX19_06980 0.35 +1.1
261,091 - MPMX19_06980 0.35 -1.6
261,091 - MPMX19_06980 0.35 -0.1
261,091 - MPMX19_06980 0.35 +0.7
261,091 - MPMX19_06980 0.35 +0.1
261,091 - MPMX19_06980 0.35 -1.4
261,091 - MPMX19_06980 0.35 -0.8
261,091 - MPMX19_06980 0.35 -1.1
261,091 - MPMX19_06980 0.35 -0.1
261,091 - MPMX19_06980 0.35 -1.1
261,091 - MPMX19_06980 0.35 -0.2
261,132 + MPMX19_06980 0.37 +0.9
261,132 + MPMX19_06980 0.37 -0.7
261,133 - MPMX19_06980 0.37 -0.5
261,133 - MPMX19_06980 0.37 -0.5
261,141 + MPMX19_06980 0.38 -1.8
261,141 + MPMX19_06980 0.38 -1.1
261,141 + MPMX19_06980 0.38 -0.2
261,141 + MPMX19_06980 0.38 -1.4
261,141 + MPMX19_06980 0.38 -0.4
261,141 + MPMX19_06980 0.38 +0.1
261,141 + MPMX19_06980 0.38 -1.5
261,142 - MPMX19_06980 0.38 -0.5
261,142 - MPMX19_06980 0.38 +0.1
261,142 - MPMX19_06980 0.38 -0.2
261,142 - MPMX19_06980 0.38 -0.2
261,142 - MPMX19_06980 0.38 -0.1
261,142 - MPMX19_06980 0.38 -2.2
261,321 + MPMX19_06980 0.47 -2.4
261,322 - MPMX19_06980 0.47 -0.6
261,322 - MPMX19_06980 0.47 -0.7
261,322 - MPMX19_06980 0.47 +1.1

Or see this region's nucleotide sequence