Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06972

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06971 and MPMX19_06972 are separated by 38 nucleotidesMPMX19_06972 and MPMX19_06973 are separated by 39 nucleotides MPMX19_06971: MPMX19_06971 - Macrolide export ATP-binding/permease protein MacB, at 247,719 to 248,921 _06971 MPMX19_06972: MPMX19_06972 - hypothetical protein, at 248,960 to 250,144 _06972 MPMX19_06973: MPMX19_06973 - 2-methylfumaryl-CoA isomerase, at 250,184 to 251,389 _06973 Position (kb) 248 249 250 251Strain fitness (log2 ratio) -2 -1 0 1 2at 248.267 kb on + strand, within MPMX19_06971at 248.267 kb on + strand, within MPMX19_06971at 248.267 kb on + strand, within MPMX19_06971at 248.268 kb on - strand, within MPMX19_06971at 248.769 kb on + strand, within MPMX19_06971at 248.769 kb on + strand, within MPMX19_06971at 248.769 kb on + strand, within MPMX19_06971at 248.769 kb on + strand, within MPMX19_06971at 248.769 kb on + strand, within MPMX19_06971at 248.770 kb on - strand, within MPMX19_06971at 248.770 kb on - strand, within MPMX19_06971at 248.770 kb on - strand, within MPMX19_06971at 248.770 kb on - strand, within MPMX19_06971at 248.770 kb on - strand, within MPMX19_06971at 248.770 kb on - strand, within MPMX19_06971at 249.287 kb on + strand, within MPMX19_06972at 249.287 kb on + strand, within MPMX19_06972at 249.341 kb on - strand, within MPMX19_06972at 249.346 kb on + strand, within MPMX19_06972at 249.346 kb on + strand, within MPMX19_06972at 249.346 kb on + strand, within MPMX19_06972at 249.346 kb on + strand, within MPMX19_06972at 249.346 kb on + strand, within MPMX19_06972at 249.347 kb on - strand, within MPMX19_06972at 249.347 kb on - strand, within MPMX19_06972at 249.347 kb on - strand, within MPMX19_06972at 249.347 kb on - strand, within MPMX19_06972at 249.545 kb on + strand, within MPMX19_06972at 249.545 kb on + strand, within MPMX19_06972at 249.546 kb on - strand, within MPMX19_06972at 249.546 kb on - strand, within MPMX19_06972at 249.546 kb on - strand, within MPMX19_06972at 249.546 kb on - strand, within MPMX19_06972at 249.546 kb on - strand, within MPMX19_06972at 249.546 kb on - strand, within MPMX19_06972at 249.779 kb on - strand, within MPMX19_06972at 250.653 kb on + strand, within MPMX19_06973at 250.707 kb on + strand, within MPMX19_06973at 250.707 kb on + strand, within MPMX19_06973at 250.716 kb on + strand, within MPMX19_06973at 250.716 kb on + strand, within MPMX19_06973at 250.716 kb on + strand, within MPMX19_06973at 250.717 kb on - strand, within MPMX19_06973at 250.887 kb on + strand, within MPMX19_06973at 250.888 kb on - strand, within MPMX19_06973at 250.888 kb on - strand, within MPMX19_06973at 250.986 kb on + strand, within MPMX19_06973at 250.986 kb on + strand, within MPMX19_06973at 250.986 kb on + strand, within MPMX19_06973at 250.986 kb on + strand, within MPMX19_06973at 250.986 kb on + strand, within MPMX19_06973at 250.987 kb on - strand, within MPMX19_06973at 250.987 kb on - strand, within MPMX19_06973at 250.987 kb on - strand, within MPMX19_06973at 250.987 kb on - strand, within MPMX19_06973

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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248,267 + MPMX19_06971 0.46 +0.6
248,267 + MPMX19_06971 0.46 -1.2
248,267 + MPMX19_06971 0.46 -0.7
248,268 - MPMX19_06971 0.46 +0.9
248,769 + MPMX19_06971 0.87 -2.7
248,769 + MPMX19_06971 0.87 +0.5
248,769 + MPMX19_06971 0.87 -1.9
248,769 + MPMX19_06971 0.87 +0.5
248,769 + MPMX19_06971 0.87 -2.0
248,770 - MPMX19_06971 0.87 +0.6
248,770 - MPMX19_06971 0.87 -0.2
248,770 - MPMX19_06971 0.87 -1.0
248,770 - MPMX19_06971 0.87 -0.5
248,770 - MPMX19_06971 0.87 +0.3
248,770 - MPMX19_06971 0.87 -0.7
249,287 + MPMX19_06972 0.28 -0.8
249,287 + MPMX19_06972 0.28 -1.2
249,341 - MPMX19_06972 0.32 +0.1
249,346 + MPMX19_06972 0.33 -0.2
249,346 + MPMX19_06972 0.33 -1.4
249,346 + MPMX19_06972 0.33 -0.9
249,346 + MPMX19_06972 0.33 +0.3
249,346 + MPMX19_06972 0.33 -1.1
249,347 - MPMX19_06972 0.33 -0.0
249,347 - MPMX19_06972 0.33 -0.8
249,347 - MPMX19_06972 0.33 -0.0
249,347 - MPMX19_06972 0.33 -0.2
249,545 + MPMX19_06972 0.49 -0.6
249,545 + MPMX19_06972 0.49 +0.3
249,546 - MPMX19_06972 0.49 -1.0
249,546 - MPMX19_06972 0.49 +1.2
249,546 - MPMX19_06972 0.49 -1.3
249,546 - MPMX19_06972 0.49 -0.8
249,546 - MPMX19_06972 0.49 -1.0
249,546 - MPMX19_06972 0.49 +1.7
249,779 - MPMX19_06972 0.69 +0.3
250,653 + MPMX19_06973 0.39 -0.2
250,707 + MPMX19_06973 0.43 -0.4
250,707 + MPMX19_06973 0.43 -1.5
250,716 + MPMX19_06973 0.44 -0.2
250,716 + MPMX19_06973 0.44 -1.2
250,716 + MPMX19_06973 0.44 +1.2
250,717 - MPMX19_06973 0.44 +0.6
250,887 + MPMX19_06973 0.58 -0.8
250,888 - MPMX19_06973 0.58 +1.9
250,888 - MPMX19_06973 0.58 -0.9
250,986 + MPMX19_06973 0.67 -1.2
250,986 + MPMX19_06973 0.67 +1.1
250,986 + MPMX19_06973 0.67 -0.6
250,986 + MPMX19_06973 0.67 +0.2
250,986 + MPMX19_06973 0.67 -0.7
250,987 - MPMX19_06973 0.67 +0.1
250,987 - MPMX19_06973 0.67 -1.6
250,987 - MPMX19_06973 0.67 -1.1
250,987 - MPMX19_06973 0.67 +0.1

Or see this region's nucleotide sequence