Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06962

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06961 and MPMX19_06962 overlap by 4 nucleotidesMPMX19_06962 and MPMX19_06963 are separated by 38 nucleotides MPMX19_06961: MPMX19_06961 - Acetyl-CoA:oxalate CoA-transferase, at 237,901 to 239,151 _06961 MPMX19_06962: MPMX19_06962 - hypothetical protein, at 239,148 to 240,014 _06962 MPMX19_06963: MPMX19_06963 - (Z)-2-((N-methylformamido)methylene)-5- hydroxybutyrolactone dehydrogenase, at 240,053 to 241,531 _06963 Position (kb) 239 240 241Strain fitness (log2 ratio) -2 -1 0 1 2at 238.433 kb on + strand, within MPMX19_06961at 238.433 kb on + strand, within MPMX19_06961at 238.433 kb on + strand, within MPMX19_06961at 238.433 kb on + strand, within MPMX19_06961at 238.434 kb on - strand, within MPMX19_06961at 238.497 kb on - strand, within MPMX19_06961at 238.682 kb on + strand, within MPMX19_06961at 238.682 kb on + strand, within MPMX19_06961at 238.682 kb on + strand, within MPMX19_06961at 238.682 kb on + strand, within MPMX19_06961at 238.683 kb on - strand, within MPMX19_06961at 238.683 kb on - strand, within MPMX19_06961at 238.683 kb on - strand, within MPMX19_06961at 238.683 kb on - strand, within MPMX19_06961at 238.683 kb on - strand, within MPMX19_06961at 238.683 kb on - strand, within MPMX19_06961at 238.683 kb on - strand, within MPMX19_06961at 238.683 kb on - strand, within MPMX19_06961at 238.683 kb on - strand, within MPMX19_06961at 238.736 kb on + strand, within MPMX19_06961at 238.769 kb on + strand, within MPMX19_06961at 238.769 kb on + strand, within MPMX19_06961at 238.770 kb on - strand, within MPMX19_06961at 238.770 kb on - strand, within MPMX19_06961at 238.770 kb on - strand, within MPMX19_06961at 238.770 kb on - strand, within MPMX19_06961at 238.955 kb on + strand, within MPMX19_06961at 238.955 kb on + strand, within MPMX19_06961at 238.956 kb on - strand, within MPMX19_06961at 238.956 kb on - strand, within MPMX19_06961at 239.073 kb on + strandat 239.074 kb on - strandat 239.074 kb on - strandat 239.203 kb on + strandat 239.203 kb on + strandat 239.543 kb on + strand, within MPMX19_06962at 239.543 kb on + strand, within MPMX19_06962at 239.647 kb on + strand, within MPMX19_06962at 239.648 kb on - strand, within MPMX19_06962at 239.648 kb on - strand, within MPMX19_06962at 239.648 kb on - strand, within MPMX19_06962at 239.904 kb on + strand, within MPMX19_06962at 239.904 kb on + strand, within MPMX19_06962at 239.904 kb on + strand, within MPMX19_06962at 239.904 kb on + strand, within MPMX19_06962at 239.904 kb on + strand, within MPMX19_06962at 239.904 kb on + strand, within MPMX19_06962at 239.904 kb on + strand, within MPMX19_06962at 239.905 kb on - strand, within MPMX19_06962at 239.905 kb on - strand, within MPMX19_06962at 239.905 kb on - strand, within MPMX19_06962at 239.905 kb on - strand, within MPMX19_06962at 239.905 kb on - strand, within MPMX19_06962at 240.120 kb on + strandat 240.120 kb on + strandat 240.120 kb on + strandat 240.121 kb on - strandat 240.121 kb on - strandat 240.121 kb on - strandat 240.121 kb on - strandat 240.121 kb on - strandat 240.172 kb on - strandat 240.207 kb on + strand, within MPMX19_06963at 240.252 kb on + strand, within MPMX19_06963at 240.252 kb on + strand, within MPMX19_06963at 240.252 kb on + strand, within MPMX19_06963at 240.451 kb on - strand, within MPMX19_06963at 240.451 kb on - strand, within MPMX19_06963at 240.451 kb on - strand, within MPMX19_06963at 240.996 kb on + strand, within MPMX19_06963at 240.996 kb on + strand, within MPMX19_06963at 240.996 kb on + strand, within MPMX19_06963at 240.996 kb on + strand, within MPMX19_06963at 240.997 kb on - strand, within MPMX19_06963at 240.997 kb on - strand, within MPMX19_06963at 240.997 kb on - strand, within MPMX19_06963at 240.997 kb on - strand, within MPMX19_06963

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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238,433 + MPMX19_06961 0.43 -1.1
238,433 + MPMX19_06961 0.43 +0.3
238,433 + MPMX19_06961 0.43 -0.5
238,433 + MPMX19_06961 0.43 -0.9
238,434 - MPMX19_06961 0.43 -1.5
238,497 - MPMX19_06961 0.48 -1.7
238,682 + MPMX19_06961 0.62 +0.1
238,682 + MPMX19_06961 0.62 -0.7
238,682 + MPMX19_06961 0.62 +0.2
238,682 + MPMX19_06961 0.62 +0.3
238,683 - MPMX19_06961 0.63 -0.7
238,683 - MPMX19_06961 0.63 -0.8
238,683 - MPMX19_06961 0.63 +0.3
238,683 - MPMX19_06961 0.63 +0.0
238,683 - MPMX19_06961 0.63 -0.5
238,683 - MPMX19_06961 0.63 +0.7
238,683 - MPMX19_06961 0.63 -0.1
238,683 - MPMX19_06961 0.63 -0.6
238,683 - MPMX19_06961 0.63 +0.5
238,736 + MPMX19_06961 0.67 -1.5
238,769 + MPMX19_06961 0.69 +1.3
238,769 + MPMX19_06961 0.69 -0.1
238,770 - MPMX19_06961 0.69 +0.3
238,770 - MPMX19_06961 0.69 -0.5
238,770 - MPMX19_06961 0.69 +1.1
238,770 - MPMX19_06961 0.69 +0.4
238,955 + MPMX19_06961 0.84 +0.5
238,955 + MPMX19_06961 0.84 -0.2
238,956 - MPMX19_06961 0.84 -1.2
238,956 - MPMX19_06961 0.84 +0.5
239,073 + +1.3
239,074 - -2.5
239,074 - -1.3
239,203 + -1.0
239,203 + -0.7
239,543 + MPMX19_06962 0.46 +1.1
239,543 + MPMX19_06962 0.46 -1.7
239,647 + MPMX19_06962 0.58 +1.3
239,648 - MPMX19_06962 0.58 -1.4
239,648 - MPMX19_06962 0.58 -1.1
239,648 - MPMX19_06962 0.58 +0.8
239,904 + MPMX19_06962 0.87 +0.0
239,904 + MPMX19_06962 0.87 +0.7
239,904 + MPMX19_06962 0.87 -0.9
239,904 + MPMX19_06962 0.87 -0.2
239,904 + MPMX19_06962 0.87 +1.1
239,904 + MPMX19_06962 0.87 -1.2
239,904 + MPMX19_06962 0.87 -1.7
239,905 - MPMX19_06962 0.87 -1.7
239,905 - MPMX19_06962 0.87 -0.3
239,905 - MPMX19_06962 0.87 -1.5
239,905 - MPMX19_06962 0.87 +1.3
239,905 - MPMX19_06962 0.87 -2.0
240,120 + -1.6
240,120 + -1.2
240,120 + -1.4
240,121 - -0.9
240,121 - -1.2
240,121 - +0.9
240,121 - +1.8
240,121 - -1.1
240,172 - -1.4
240,207 + MPMX19_06963 0.10 -0.7
240,252 + MPMX19_06963 0.13 -1.0
240,252 + MPMX19_06963 0.13 -0.9
240,252 + MPMX19_06963 0.13 +0.8
240,451 - MPMX19_06963 0.27 -0.0
240,451 - MPMX19_06963 0.27 -0.2
240,451 - MPMX19_06963 0.27 -0.0
240,996 + MPMX19_06963 0.64 -0.5
240,996 + MPMX19_06963 0.64 -0.2
240,996 + MPMX19_06963 0.64 -0.9
240,996 + MPMX19_06963 0.64 -0.9
240,997 - MPMX19_06963 0.64 -0.9
240,997 - MPMX19_06963 0.64 -0.7
240,997 - MPMX19_06963 0.64 -0.9
240,997 - MPMX19_06963 0.64 -1.6

Or see this region's nucleotide sequence