Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06956 and MPMX19_06957 overlap by 8 nucleotides MPMX19_06957 and MPMX19_06958 overlap by 4 nucleotides MPMX19_06958 and MPMX19_06959 are separated by 164 nucleotides
MPMX19_06956: MPMX19_06956 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 232,355 to 233,077
_06956
MPMX19_06957: MPMX19_06957 - Lipopolysaccharide export system ATP-binding protein LptB, at 233,070 to 233,846
_06957
MPMX19_06958: MPMX19_06958 - Citrate synthase 1, at 233,843 to 234,931
_06958
MPMX19_06959: MPMX19_06959 - hypothetical protein, at 235,096 to 236,325
_06959
Position (kb) 233
234
235 Strain fitness (log2 ratio) -2
-1
0
1
2 at 233.016 kb on + strand at 233.100 kb on - strand at 233.100 kb on - strand at 233.100 kb on - strand at 233.100 kb on - strand at 233.100 kb on - strand at 233.100 kb on - strand at 233.100 kb on - strand at 233.100 kb on - strand at 233.100 kb on - strand at 233.100 kb on - strand at 233.100 kb on - strand at 233.100 kb on - strand at 233.100 kb on - strand at 233.100 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.895 kb on + strand at 233.895 kb on + strand at 233.895 kb on + strand at 233.895 kb on + strand at 233.896 kb on - strand at 233.896 kb on - strand at 233.896 kb on - strand at 234.216 kb on + strand, within MPMX19_06958 at 234.216 kb on + strand, within MPMX19_06958 at 234.216 kb on + strand, within MPMX19_06958 at 234.216 kb on + strand, within MPMX19_06958 at 234.216 kb on + strand, within MPMX19_06958 at 234.216 kb on + strand, within MPMX19_06958 at 234.217 kb on - strand, within MPMX19_06958 at 234.217 kb on - strand, within MPMX19_06958 at 234.217 kb on - strand, within MPMX19_06958 at 234.217 kb on - strand, within MPMX19_06958 at 234.217 kb on - strand, within MPMX19_06958 at 234.217 kb on - strand, within MPMX19_06958 at 234.217 kb on - strand, within MPMX19_06958 at 234.217 kb on - strand, within MPMX19_06958 at 234.468 kb on + strand, within MPMX19_06958 at 234.468 kb on + strand, within MPMX19_06958 at 234.469 kb on - strand, within MPMX19_06958 at 234.469 kb on - strand, within MPMX19_06958 at 234.826 kb on - strand at 235.031 kb on + strand at 235.031 kb on + strand at 235.031 kb on + strand at 235.032 kb on - strand at 235.032 kb on - strand at 235.032 kb on - strand at 235.032 kb on - strand at 235.032 kb on - strand at 235.033 kb on + strand at 235.033 kb on + strand at 235.033 kb on + strand at 235.033 kb on + strand at 235.033 kb on + strand at 235.033 kb on + strand at 235.033 kb on + strand at 235.033 kb on + strand at 235.033 kb on + strand at 235.033 kb on + strand at 235.034 kb on - strand at 235.034 kb on - strand at 235.034 kb on - strand at 235.034 kb on - strand at 235.034 kb on - strand at 235.034 kb on - strand at 235.034 kb on - strand at 235.034 kb on - strand at 235.034 kb on - strand at 235.034 kb on - strand at 235.034 kb on - strand at 235.037 kb on + strand at 235.037 kb on + strand at 235.037 kb on + strand at 235.037 kb on + strand at 235.037 kb on + strand at 235.037 kb on + strand at 235.037 kb on + strand at 235.037 kb on + strand at 235.037 kb on + strand at 235.038 kb on - strand at 235.049 kb on + strand at 235.049 kb on + strand at 235.049 kb on + strand at 235.050 kb on - strand at 235.059 kb on + strand at 235.059 kb on + strand at 235.097 kb on + strand at 235.097 kb on + strand at 235.097 kb on + strand at 235.097 kb on + strand at 235.097 kb on + strand at 235.097 kb on + strand at 235.097 kb on + strand at 235.097 kb on + strand at 235.097 kb on + strand at 235.098 kb on - strand at 235.098 kb on - strand at 235.098 kb on - strand at 235.178 kb on + strand at 235.178 kb on + strand at 235.178 kb on + strand at 235.178 kb on + strand at 235.178 kb on + strand at 235.178 kb on + strand at 235.178 kb on + strand at 235.178 kb on + strand at 235.178 kb on + strand at 235.178 kb on + strand at 235.178 kb on + strand at 235.179 kb on - strand at 235.179 kb on - strand at 235.179 kb on - strand at 235.179 kb on - strand at 235.179 kb on - strand at 235.179 kb on - strand at 235.179 kb on - strand at 235.181 kb on + strand at 235.181 kb on + strand at 235.181 kb on + strand at 235.182 kb on - strand at 235.182 kb on - strand at 235.182 kb on - strand at 235.229 kb on + strand, within MPMX19_06959 at 235.229 kb on + strand, within MPMX19_06959 at 235.229 kb on + strand, within MPMX19_06959 at 235.229 kb on + strand, within MPMX19_06959 at 235.230 kb on - strand, within MPMX19_06959 at 235.382 kb on + strand, within MPMX19_06959 at 235.383 kb on - strand, within MPMX19_06959 at 235.383 kb on - strand, within MPMX19_06959 at 235.397 kb on + strand, within MPMX19_06959 at 235.397 kb on + strand, within MPMX19_06959 at 235.398 kb on - strand, within MPMX19_06959 at 235.472 kb on + strand, within MPMX19_06959 at 235.472 kb on + strand, within MPMX19_06959 at 235.472 kb on + strand, within MPMX19_06959 at 235.473 kb on - strand, within MPMX19_06959 at 235.473 kb on - strand, within MPMX19_06959 at 235.473 kb on - strand, within MPMX19_06959 at 235.473 kb on - strand, within MPMX19_06959 at 235.787 kb on + strand, within MPMX19_06959 at 235.788 kb on - strand, within MPMX19_06959 at 235.788 kb on - strand, within MPMX19_06959 at 235.788 kb on - strand, within MPMX19_06959 at 235.806 kb on - strand, within MPMX19_06959 at 235.806 kb on - strand, within MPMX19_06959 at 235.806 kb on - strand, within MPMX19_06959 at 235.806 kb on - strand, within MPMX19_06959 at 235.806 kb on - strand, within MPMX19_06959 at 235.862 kb on + strand, within MPMX19_06959 at 235.862 kb on + strand, within MPMX19_06959 at 235.862 kb on + strand, within MPMX19_06959 at 235.863 kb on - strand, within MPMX19_06959 at 235.863 kb on - strand, within MPMX19_06959 at 235.871 kb on + strand, within MPMX19_06959 at 235.871 kb on + strand, within MPMX19_06959 at 235.871 kb on + strand, within MPMX19_06959 at 235.871 kb on + strand, within MPMX19_06959 at 235.871 kb on + strand, within MPMX19_06959 at 235.872 kb on - strand, within MPMX19_06959 at 235.872 kb on - strand, within MPMX19_06959
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 233,016 + -1.3 233,100 - +0.1 233,100 - -1.7 233,100 - -0.5 233,100 - +0.1 233,100 - -1.4 233,100 - -0.9 233,100 - -2.0 233,100 - +1.7 233,100 - +0.1 233,100 - +0.5 233,100 - -0.5 233,100 - +2.1 233,100 - -1.1 233,100 - -1.5 233,102 - +1.4 233,102 - -0.8 233,102 - -0.5 233,102 - +0.1 233,102 - -0.5 233,102 - -1.2 233,102 - -0.7 233,102 - +1.0 233,102 - +0.2 233,102 - -0.1 233,102 - -0.2 233,102 - -0.2 233,102 - -0.9 233,102 - -0.6 233,102 - +0.2 233,102 - -0.9 233,102 - -0.7 233,102 - +0.3 233,102 - -0.3 233,102 - +0.3 233,102 - -0.4 233,102 - -1.8 233,102 - +0.8 233,102 - -1.0 233,102 - -0.6 233,102 - -0.6 233,102 - +0.3 233,102 - +0.1 233,102 - -1.1 233,102 - -0.7 233,102 - -0.5 233,102 - -0.9 233,102 - +0.1 233,102 - +0.8 233,102 - +0.3 233,102 - -1.5 233,102 - +0.8 233,102 - -0.2 233,102 - -1.2 233,895 + -1.5 233,895 + +0.3 233,895 + -0.5 233,895 + -1.8 233,896 - -1.0 233,896 - +0.7 233,896 - -1.2 234,216 + MPMX19_06958 0.34 -2.3 234,216 + MPMX19_06958 0.34 -0.9 234,216 + MPMX19_06958 0.34 +0.2 234,216 + MPMX19_06958 0.34 +0.5 234,216 + MPMX19_06958 0.34 -1.5 234,216 + MPMX19_06958 0.34 -0.8 234,217 - MPMX19_06958 0.34 -0.2 234,217 - MPMX19_06958 0.34 -0.7 234,217 - MPMX19_06958 0.34 -1.6 234,217 - MPMX19_06958 0.34 +0.3 234,217 - MPMX19_06958 0.34 -0.7 234,217 - MPMX19_06958 0.34 -0.5 234,217 - MPMX19_06958 0.34 +0.7 234,217 - MPMX19_06958 0.34 +0.5 234,468 + MPMX19_06958 0.57 -0.5 234,468 + MPMX19_06958 0.57 -1.4 234,469 - MPMX19_06958 0.57 -0.2 234,469 - MPMX19_06958 0.57 -0.8 234,826 - +1.1 235,031 + +0.7 235,031 + -1.3 235,031 + -1.1 235,032 - -0.7 235,032 - +0.8 235,032 - -1.2 235,032 - +0.3 235,032 - -0.0 235,033 + -0.5 235,033 + -1.2 235,033 + -0.1 235,033 + -0.1 235,033 + -1.6 235,033 + -0.9 235,033 + -2.3 235,033 + -1.2 235,033 + -1.8 235,033 + -1.1 235,034 - -0.6 235,034 - -0.2 235,034 - -0.3 235,034 - +0.1 235,034 - +0.5 235,034 - -0.9 235,034 - +0.4 235,034 - +0.5 235,034 - -0.5 235,034 - -0.5 235,034 - +2.3 235,037 + -1.3 235,037 + -1.2 235,037 + -0.6 235,037 + -1.4 235,037 + -0.1 235,037 + +1.8 235,037 + -0.3 235,037 + -0.6 235,037 + -0.4 235,038 - -0.2 235,049 + -0.2 235,049 + +0.1 235,049 + -0.2 235,050 - -0.0 235,059 + -1.4 235,059 + +0.5 235,097 + -1.2 235,097 + +0.4 235,097 + -0.5 235,097 + +0.4 235,097 + -0.1 235,097 + -1.0 235,097 + -2.2 235,097 + -0.1 235,097 + -0.6 235,098 - -0.8 235,098 - +1.3 235,098 - -0.1 235,178 + -0.5 235,178 + +0.4 235,178 + -0.6 235,178 + -0.7 235,178 + -1.0 235,178 + -0.3 235,178 + -2.1 235,178 + +0.4 235,178 + -0.7 235,178 + -2.0 235,178 + +0.1 235,179 - +0.1 235,179 - +1.7 235,179 - -0.8 235,179 - -0.9 235,179 - -0.0 235,179 - -1.4 235,179 - +0.5 235,181 + -0.5 235,181 + -0.4 235,181 + -1.1 235,182 - -0.7 235,182 - -0.5 235,182 - +1.1 235,229 + MPMX19_06959 0.11 +0.4 235,229 + MPMX19_06959 0.11 +0.9 235,229 + MPMX19_06959 0.11 -0.3 235,229 + MPMX19_06959 0.11 +0.1 235,230 - MPMX19_06959 0.11 -0.9 235,382 + MPMX19_06959 0.23 -0.9 235,383 - MPMX19_06959 0.23 -1.4 235,383 - MPMX19_06959 0.23 -1.8 235,397 + MPMX19_06959 0.24 -0.9 235,397 + MPMX19_06959 0.24 +0.7 235,398 - MPMX19_06959 0.25 +0.1 235,472 + MPMX19_06959 0.31 +0.5 235,472 + MPMX19_06959 0.31 -0.5 235,472 + MPMX19_06959 0.31 -1.3 235,473 - MPMX19_06959 0.31 -0.7 235,473 - MPMX19_06959 0.31 -1.4 235,473 - MPMX19_06959 0.31 -1.2 235,473 - MPMX19_06959 0.31 -0.7 235,787 + MPMX19_06959 0.56 -0.3 235,788 - MPMX19_06959 0.56 -0.2 235,788 - MPMX19_06959 0.56 +0.8 235,788 - MPMX19_06959 0.56 -0.7 235,806 - MPMX19_06959 0.58 +0.8 235,806 - MPMX19_06959 0.58 +1.3 235,806 - MPMX19_06959 0.58 -0.1 235,806 - MPMX19_06959 0.58 -0.3 235,806 - MPMX19_06959 0.58 -1.6 235,862 + MPMX19_06959 0.62 -2.6 235,862 + MPMX19_06959 0.62 -0.8 235,862 + MPMX19_06959 0.62 +0.3 235,863 - MPMX19_06959 0.62 -0.1 235,863 - MPMX19_06959 0.62 -1.9 235,871 + MPMX19_06959 0.63 -0.5 235,871 + MPMX19_06959 0.63 -1.2 235,871 + MPMX19_06959 0.63 -1.3 235,871 + MPMX19_06959 0.63 -0.2 235,871 + MPMX19_06959 0.63 -1.3 235,872 - MPMX19_06959 0.63 -1.2 235,872 - MPMX19_06959 0.63 -1.4
Or see this region's nucleotide sequence