Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06954 and MPMX19_06955 are separated by 3 nucleotides MPMX19_06955 and MPMX19_06956 are separated by 18 nucleotides MPMX19_06956 and MPMX19_06957 overlap by 8 nucleotides
MPMX19_06954: MPMX19_06954 - hypothetical protein, at 230,468 to 231,445
_06954
MPMX19_06955: MPMX19_06955 - High-affinity branched-chain amino acid transport system permease protein LivH, at 231,449 to 232,336
_06955
MPMX19_06956: MPMX19_06956 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 232,355 to 233,077
_06956
MPMX19_06957: MPMX19_06957 - Lipopolysaccharide export system ATP-binding protein LptB, at 233,070 to 233,846
_06957
Position (kb) 231
232
233 Strain fitness (log2 ratio) -2
-1
0
1
2 at 230.596 kb on - strand, within MPMX19_06954 at 230.596 kb on - strand, within MPMX19_06954 at 230.596 kb on - strand, within MPMX19_06954 at 230.596 kb on - strand, within MPMX19_06954 at 230.596 kb on - strand, within MPMX19_06954 at 231.337 kb on - strand, within MPMX19_06954 at 231.337 kb on - strand, within MPMX19_06954 at 231.399 kb on + strand at 231.399 kb on + strand at 231.399 kb on + strand at 231.399 kb on + strand at 231.399 kb on + strand at 231.399 kb on + strand at 231.399 kb on + strand at 231.399 kb on + strand at 231.399 kb on + strand at 231.399 kb on + strand at 231.400 kb on - strand at 231.400 kb on - strand at 231.400 kb on - strand at 231.400 kb on - strand at 231.400 kb on - strand at 231.400 kb on - strand at 231.400 kb on - strand at 231.400 kb on - strand at 231.400 kb on - strand at 231.400 kb on - strand at 231.400 kb on - strand at 231.409 kb on + strand at 231.450 kb on + strand at 231.450 kb on + strand at 231.450 kb on + strand at 231.450 kb on + strand at 231.451 kb on - strand at 231.451 kb on - strand at 231.451 kb on - strand at 231.451 kb on - strand at 231.482 kb on + strand at 231.482 kb on + strand at 231.483 kb on - strand at 231.483 kb on - strand at 231.537 kb on + strand at 231.538 kb on - strand, within MPMX19_06955 at 231.538 kb on - strand, within MPMX19_06955 at 231.733 kb on - strand, within MPMX19_06955 at 231.733 kb on - strand, within MPMX19_06955 at 231.733 kb on - strand, within MPMX19_06955 at 231.892 kb on - strand, within MPMX19_06955 at 231.892 kb on - strand, within MPMX19_06955 at 231.903 kb on + strand, within MPMX19_06955 at 231.903 kb on + strand, within MPMX19_06955 at 231.903 kb on + strand, within MPMX19_06955 at 231.903 kb on + strand, within MPMX19_06955 at 231.904 kb on - strand, within MPMX19_06955 at 231.904 kb on - strand, within MPMX19_06955 at 231.904 kb on - strand, within MPMX19_06955 at 231.904 kb on - strand, within MPMX19_06955 at 231.952 kb on - strand, within MPMX19_06955 at 231.972 kb on + strand, within MPMX19_06955 at 231.973 kb on - strand, within MPMX19_06955 at 231.973 kb on - strand, within MPMX19_06955 at 231.973 kb on - strand, within MPMX19_06955 at 232.032 kb on + strand, within MPMX19_06955 at 232.032 kb on + strand, within MPMX19_06955 at 232.033 kb on - strand, within MPMX19_06955 at 232.033 kb on - strand, within MPMX19_06955 at 232.050 kb on + strand, within MPMX19_06955 at 232.050 kb on + strand, within MPMX19_06955 at 232.050 kb on + strand, within MPMX19_06955 at 232.051 kb on - strand, within MPMX19_06955 at 232.051 kb on - strand, within MPMX19_06955 at 232.147 kb on - strand, within MPMX19_06955 at 232.147 kb on - strand, within MPMX19_06955 at 232.147 kb on - strand, within MPMX19_06955 at 232.147 kb on - strand, within MPMX19_06955 at 232.147 kb on - strand, within MPMX19_06955 at 232.185 kb on + strand, within MPMX19_06955 at 232.185 kb on + strand, within MPMX19_06955 at 232.185 kb on + strand, within MPMX19_06955 at 232.185 kb on + strand, within MPMX19_06955 at 232.185 kb on + strand, within MPMX19_06955 at 232.185 kb on + strand, within MPMX19_06955 at 232.185 kb on + strand, within MPMX19_06955 at 232.185 kb on + strand, within MPMX19_06955 at 232.185 kb on + strand, within MPMX19_06955 at 232.185 kb on + strand, within MPMX19_06955 at 232.185 kb on + strand, within MPMX19_06955 at 232.185 kb on + strand, within MPMX19_06955 at 232.260 kb on + strand at 232.260 kb on + strand at 232.369 kb on - strand at 232.369 kb on - strand at 232.369 kb on - strand at 232.369 kb on - strand at 232.369 kb on - strand at 232.369 kb on - strand at 232.369 kb on - strand at 233.016 kb on + strand at 233.100 kb on - strand at 233.100 kb on - strand at 233.100 kb on - strand at 233.100 kb on - strand at 233.100 kb on - strand at 233.100 kb on - strand at 233.100 kb on - strand at 233.100 kb on - strand at 233.100 kb on - strand at 233.100 kb on - strand at 233.100 kb on - strand at 233.100 kb on - strand at 233.100 kb on - strand at 233.100 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 230,596 - MPMX19_06954 0.13 -1.9 230,596 - MPMX19_06954 0.13 -1.1 230,596 - MPMX19_06954 0.13 -1.0 230,596 - MPMX19_06954 0.13 +0.1 230,596 - MPMX19_06954 0.13 -0.5 231,337 - MPMX19_06954 0.89 -1.6 231,337 - MPMX19_06954 0.89 +0.2 231,399 + +0.6 231,399 + -0.1 231,399 + -1.3 231,399 + -0.9 231,399 + +0.3 231,399 + -0.2 231,399 + -0.2 231,399 + -1.2 231,399 + +0.2 231,399 + +1.1 231,400 - -2.4 231,400 - +0.6 231,400 - +0.3 231,400 - +0.1 231,400 - +0.2 231,400 - +1.0 231,400 - +0.3 231,400 - -0.3 231,400 - -0.8 231,400 - -2.6 231,400 - -1.4 231,409 + -1.6 231,450 + -1.2 231,450 + -0.2 231,450 + -1.2 231,450 + +0.6 231,451 - +0.5 231,451 - +1.9 231,451 - -0.5 231,451 - -1.4 231,482 + -0.9 231,482 + -1.5 231,483 - -0.2 231,483 - -1.5 231,537 + +0.2 231,538 - MPMX19_06955 0.10 -1.1 231,538 - MPMX19_06955 0.10 -0.7 231,733 - MPMX19_06955 0.32 -0.1 231,733 - MPMX19_06955 0.32 +1.2 231,733 - MPMX19_06955 0.32 -0.4 231,892 - MPMX19_06955 0.50 +0.3 231,892 - MPMX19_06955 0.50 -0.6 231,903 + MPMX19_06955 0.51 +0.1 231,903 + MPMX19_06955 0.51 +1.8 231,903 + MPMX19_06955 0.51 +0.3 231,903 + MPMX19_06955 0.51 -0.7 231,904 - MPMX19_06955 0.51 -0.5 231,904 - MPMX19_06955 0.51 -0.1 231,904 - MPMX19_06955 0.51 +1.1 231,904 - MPMX19_06955 0.51 -0.1 231,952 - MPMX19_06955 0.57 -0.8 231,972 + MPMX19_06955 0.59 -0.7 231,973 - MPMX19_06955 0.59 +1.3 231,973 - MPMX19_06955 0.59 -1.2 231,973 - MPMX19_06955 0.59 -0.4 232,032 + MPMX19_06955 0.66 -0.8 232,032 + MPMX19_06955 0.66 -0.8 232,033 - MPMX19_06955 0.66 +1.7 232,033 - MPMX19_06955 0.66 -0.8 232,050 + MPMX19_06955 0.68 -0.2 232,050 + MPMX19_06955 0.68 +0.2 232,050 + MPMX19_06955 0.68 -0.4 232,051 - MPMX19_06955 0.68 -0.5 232,051 - MPMX19_06955 0.68 -0.9 232,147 - MPMX19_06955 0.79 +0.3 232,147 - MPMX19_06955 0.79 +0.1 232,147 - MPMX19_06955 0.79 -1.3 232,147 - MPMX19_06955 0.79 +0.7 232,147 - MPMX19_06955 0.79 -0.7 232,185 + MPMX19_06955 0.83 +0.1 232,185 + MPMX19_06955 0.83 +1.5 232,185 + MPMX19_06955 0.83 +1.3 232,185 + MPMX19_06955 0.83 -0.7 232,185 + MPMX19_06955 0.83 -0.0 232,185 + MPMX19_06955 0.83 -0.2 232,185 + MPMX19_06955 0.83 -2.1 232,185 + MPMX19_06955 0.83 -0.0 232,185 + MPMX19_06955 0.83 -0.7 232,185 + MPMX19_06955 0.83 -1.5 232,185 + MPMX19_06955 0.83 +0.4 232,185 + MPMX19_06955 0.83 -0.7 232,260 + +1.6 232,260 + -0.2 232,369 - +1.1 232,369 - -0.5 232,369 - -0.0 232,369 - -0.1 232,369 - +0.5 232,369 - +0.4 232,369 - +0.4 233,016 + -1.3 233,100 - +0.1 233,100 - -1.7 233,100 - -0.5 233,100 - +0.1 233,100 - -1.4 233,100 - -0.9 233,100 - -2.0 233,100 - +1.7 233,100 - +0.1 233,100 - +0.5 233,100 - -0.5 233,100 - +2.1 233,100 - -1.1 233,100 - -1.5 233,102 - +1.4 233,102 - -0.8 233,102 - -0.5 233,102 - +0.1 233,102 - -0.5 233,102 - -1.2 233,102 - -0.7 233,102 - +1.0 233,102 - +0.2 233,102 - -0.1 233,102 - -0.2 233,102 - -0.2 233,102 - -0.9 233,102 - -0.6 233,102 - +0.2 233,102 - -0.9 233,102 - -0.7 233,102 - +0.3 233,102 - -0.3 233,102 - +0.3 233,102 - -0.4 233,102 - -1.8 233,102 - +0.8 233,102 - -1.0 233,102 - -0.6 233,102 - -0.6 233,102 - +0.3 233,102 - +0.1 233,102 - -1.1 233,102 - -0.7 233,102 - -0.5 233,102 - -0.9 233,102 - +0.1 233,102 - +0.8 233,102 - +0.3 233,102 - -1.5 233,102 - +0.8 233,102 - -0.2 233,102 - -1.2
Or see this region's nucleotide sequence