Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06950

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06949 and MPMX19_06950 are separated by 97 nucleotidesMPMX19_06950 and MPMX19_06951 are separated by 191 nucleotides MPMX19_06949: MPMX19_06949 - Acryloyl-CoA reductase (NADH), at 225,069 to 226,232 _06949 MPMX19_06950: MPMX19_06950 - Glycine cleavage system transcriptional activator, at 226,330 to 227,229 _06950 MPMX19_06951: MPMX19_06951 - Beta-ketoadipyl-CoA thiolase, at 227,421 to 228,626 _06951 Position (kb) 226 227 228Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 225.350 kb on - strand, within MPMX19_06949at 225.585 kb on - strand, within MPMX19_06949at 225.585 kb on - strand, within MPMX19_06949at 225.607 kb on + strand, within MPMX19_06949at 225.607 kb on + strand, within MPMX19_06949at 225.607 kb on + strand, within MPMX19_06949at 225.607 kb on + strand, within MPMX19_06949at 225.608 kb on - strand, within MPMX19_06949at 225.727 kb on + strand, within MPMX19_06949at 225.727 kb on + strand, within MPMX19_06949at 225.727 kb on + strand, within MPMX19_06949at 225.727 kb on + strand, within MPMX19_06949at 225.727 kb on + strand, within MPMX19_06949at 225.727 kb on + strand, within MPMX19_06949at 225.727 kb on + strand, within MPMX19_06949at 225.727 kb on + strand, within MPMX19_06949at 225.727 kb on + strand, within MPMX19_06949at 225.727 kb on + strand, within MPMX19_06949at 225.727 kb on + strand, within MPMX19_06949at 225.727 kb on + strand, within MPMX19_06949at 225.727 kb on + strand, within MPMX19_06949at 225.728 kb on - strand, within MPMX19_06949at 225.728 kb on - strand, within MPMX19_06949at 225.728 kb on - strand, within MPMX19_06949at 225.728 kb on - strand, within MPMX19_06949at 225.728 kb on - strand, within MPMX19_06949at 225.728 kb on - strand, within MPMX19_06949at 225.728 kb on - strand, within MPMX19_06949at 225.728 kb on - strand, within MPMX19_06949at 225.728 kb on - strand, within MPMX19_06949at 225.728 kb on - strand, within MPMX19_06949at 225.790 kb on + strand, within MPMX19_06949at 225.790 kb on + strand, within MPMX19_06949at 225.790 kb on + strand, within MPMX19_06949at 225.790 kb on + strand, within MPMX19_06949at 225.790 kb on + strand, within MPMX19_06949at 225.790 kb on + strand, within MPMX19_06949at 225.790 kb on + strand, within MPMX19_06949at 225.791 kb on - strand, within MPMX19_06949at 225.791 kb on - strand, within MPMX19_06949at 225.791 kb on - strand, within MPMX19_06949at 225.791 kb on - strand, within MPMX19_06949at 225.791 kb on - strand, within MPMX19_06949at 225.791 kb on - strand, within MPMX19_06949at 225.791 kb on - strand, within MPMX19_06949at 225.932 kb on - strand, within MPMX19_06949at 226.316 kb on + strandat 226.316 kb on + strandat 226.316 kb on + strandat 226.316 kb on + strandat 226.316 kb on + strandat 226.317 kb on - strandat 226.317 kb on - strandat 226.317 kb on - strandat 226.318 kb on + strandat 226.318 kb on + strandat 226.318 kb on + strandat 226.318 kb on + strandat 226.318 kb on + strandat 226.318 kb on + strandat 226.318 kb on + strandat 226.318 kb on + strandat 226.318 kb on + strandat 226.318 kb on + strandat 226.319 kb on - strandat 226.319 kb on - strandat 226.319 kb on - strandat 226.319 kb on - strandat 226.319 kb on - strandat 226.319 kb on - strandat 226.324 kb on + strandat 226.324 kb on + strandat 226.325 kb on - strandat 226.328 kb on + strandat 226.328 kb on + strandat 226.328 kb on + strandat 226.328 kb on + strandat 226.328 kb on + strandat 226.328 kb on + strandat 226.329 kb on - strandat 226.329 kb on - strandat 226.477 kb on + strand, within MPMX19_06950at 226.478 kb on - strand, within MPMX19_06950at 226.478 kb on - strand, within MPMX19_06950at 226.478 kb on - strand, within MPMX19_06950at 226.478 kb on - strand, within MPMX19_06950at 226.639 kb on + strand, within MPMX19_06950at 226.639 kb on + strand, within MPMX19_06950at 226.639 kb on + strand, within MPMX19_06950at 226.639 kb on + strand, within MPMX19_06950at 226.639 kb on + strand, within MPMX19_06950at 226.640 kb on - strand, within MPMX19_06950at 226.640 kb on - strand, within MPMX19_06950at 226.640 kb on - strand, within MPMX19_06950at 226.640 kb on - strand, within MPMX19_06950at 226.640 kb on - strand, within MPMX19_06950at 226.640 kb on - strand, within MPMX19_06950at 226.640 kb on - strand, within MPMX19_06950at 227.020 kb on + strand, within MPMX19_06950at 227.021 kb on - strand, within MPMX19_06950at 227.143 kb on + strandat 227.143 kb on + strandat 227.143 kb on + strandat 227.144 kb on - strandat 227.144 kb on - strandat 227.259 kb on + strandat 227.259 kb on + strandat 227.259 kb on + strandat 227.259 kb on + strandat 227.260 kb on - strandat 227.260 kb on - strandat 227.260 kb on - strandat 227.275 kb on + strandat 227.275 kb on + strandat 227.275 kb on + strandat 227.276 kb on - strandat 227.276 kb on - strandat 227.276 kb on - strandat 227.276 kb on - strandat 227.420 kb on + strandat 227.420 kb on + strandat 227.420 kb on + strandat 227.420 kb on + strandat 227.420 kb on + strandat 227.420 kb on + strandat 227.420 kb on + strandat 227.421 kb on - strandat 227.421 kb on - strandat 227.421 kb on - strandat 227.421 kb on - strandat 227.421 kb on - strandat 227.469 kb on + strandat 227.940 kb on + strand, within MPMX19_06951

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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225,350 - MPMX19_06949 0.24 +0.5
225,585 - MPMX19_06949 0.44 +0.3
225,585 - MPMX19_06949 0.44 -0.2
225,607 + MPMX19_06949 0.46 -1.2
225,607 + MPMX19_06949 0.46 +1.8
225,607 + MPMX19_06949 0.46 -1.4
225,607 + MPMX19_06949 0.46 -0.8
225,608 - MPMX19_06949 0.46 +1.3
225,727 + MPMX19_06949 0.57 -1.1
225,727 + MPMX19_06949 0.57 +0.3
225,727 + MPMX19_06949 0.57 -0.0
225,727 + MPMX19_06949 0.57 -0.7
225,727 + MPMX19_06949 0.57 +0.0
225,727 + MPMX19_06949 0.57 -1.4
225,727 + MPMX19_06949 0.57 -0.6
225,727 + MPMX19_06949 0.57 +0.8
225,727 + MPMX19_06949 0.57 +0.0
225,727 + MPMX19_06949 0.57 +1.1
225,727 + MPMX19_06949 0.57 -0.8
225,727 + MPMX19_06949 0.57 -0.8
225,727 + MPMX19_06949 0.57 -1.2
225,728 - MPMX19_06949 0.57 -0.4
225,728 - MPMX19_06949 0.57 -0.6
225,728 - MPMX19_06949 0.57 +0.3
225,728 - MPMX19_06949 0.57 -0.5
225,728 - MPMX19_06949 0.57 -0.1
225,728 - MPMX19_06949 0.57 -0.0
225,728 - MPMX19_06949 0.57 -1.1
225,728 - MPMX19_06949 0.57 -1.5
225,728 - MPMX19_06949 0.57 +0.1
225,728 - MPMX19_06949 0.57 -1.0
225,790 + MPMX19_06949 0.62 +0.9
225,790 + MPMX19_06949 0.62 +0.7
225,790 + MPMX19_06949 0.62 +2.1
225,790 + MPMX19_06949 0.62 +0.7
225,790 + MPMX19_06949 0.62 +0.5
225,790 + MPMX19_06949 0.62 -0.2
225,790 + MPMX19_06949 0.62 -0.5
225,791 - MPMX19_06949 0.62 +0.9
225,791 - MPMX19_06949 0.62 +0.1
225,791 - MPMX19_06949 0.62 -1.1
225,791 - MPMX19_06949 0.62 -0.4
225,791 - MPMX19_06949 0.62 -0.2
225,791 - MPMX19_06949 0.62 +0.6
225,791 - MPMX19_06949 0.62 -1.0
225,932 - MPMX19_06949 0.74 +0.7
226,316 + +0.9
226,316 + -1.8
226,316 + -2.9
226,316 + -0.9
226,316 + -2.5
226,317 - +0.8
226,317 - -1.4
226,317 - -0.5
226,318 + -0.8
226,318 + -0.5
226,318 + -0.2
226,318 + -0.7
226,318 + -2.5
226,318 + +1.1
226,318 + -0.4
226,318 + -1.8
226,318 + +0.3
226,318 + +0.3
226,319 - +1.3
226,319 - -0.2
226,319 - +0.8
226,319 - +0.1
226,319 - -0.3
226,319 - -0.2
226,324 + -1.0
226,324 + -1.2
226,325 - -0.5
226,328 + -0.6
226,328 + +0.8
226,328 + -0.1
226,328 + -0.2
226,328 + -0.9
226,328 + -1.4
226,329 - -0.5
226,329 - -0.5
226,477 + MPMX19_06950 0.16 +1.3
226,478 - MPMX19_06950 0.16 +1.3
226,478 - MPMX19_06950 0.16 -0.2
226,478 - MPMX19_06950 0.16 -2.0
226,478 - MPMX19_06950 0.16 -0.3
226,639 + MPMX19_06950 0.34 -1.6
226,639 + MPMX19_06950 0.34 -0.2
226,639 + MPMX19_06950 0.34 -0.4
226,639 + MPMX19_06950 0.34 -0.9
226,639 + MPMX19_06950 0.34 -0.1
226,640 - MPMX19_06950 0.34 -1.2
226,640 - MPMX19_06950 0.34 +0.3
226,640 - MPMX19_06950 0.34 +0.1
226,640 - MPMX19_06950 0.34 -2.0
226,640 - MPMX19_06950 0.34 -0.4
226,640 - MPMX19_06950 0.34 -0.4
226,640 - MPMX19_06950 0.34 -1.5
227,020 + MPMX19_06950 0.77 +1.0
227,021 - MPMX19_06950 0.77 -0.7
227,143 + +0.0
227,143 + -0.8
227,143 + -0.8
227,144 - -1.4
227,144 - -0.1
227,259 + +0.5
227,259 + +0.0
227,259 + -0.9
227,259 + +0.3
227,260 - -1.1
227,260 - +0.8
227,260 - +0.5
227,275 + -1.4
227,275 + -0.4
227,275 + -2.3
227,276 - -1.2
227,276 - -1.7
227,276 - -0.7
227,276 - -1.3
227,420 + -0.5
227,420 + -1.2
227,420 + +1.3
227,420 + +0.5
227,420 + +0.5
227,420 + -0.9
227,420 + +0.3
227,421 - -0.1
227,421 - -0.7
227,421 - -1.4
227,421 - +0.6
227,421 - -0.7
227,469 + -1.9
227,940 + MPMX19_06951 0.43 -1.7

Or see this region's nucleotide sequence