Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06945

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06944 and MPMX19_06945 overlap by 4 nucleotidesMPMX19_06945 and MPMX19_06946 are separated by 127 nucleotidesMPMX19_06946 and MPMX19_06947 overlap by 1 nucleotides MPMX19_06944: MPMX19_06944 - Fatty acid oxidation complex subunit alpha, at 218,190 to 220,301 _06944 MPMX19_06945: MPMX19_06945 - hypothetical protein, at 220,298 to 221,539 _06945 MPMX19_06946: MPMX19_06946 - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase, at 221,667 to 222,515 _06946 MPMX19_06947: MPMX19_06947 - hypothetical protein, at 222,515 to 222,898 _06947 Position (kb) 220 221 222Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 220.377 kb on + strandat 220.377 kb on + strandat 220.377 kb on + strandat 220.377 kb on + strandat 220.377 kb on + strandat 220.377 kb on + strandat 220.378 kb on - strandat 220.378 kb on - strandat 220.378 kb on - strandat 220.378 kb on - strandat 220.378 kb on - strandat 220.378 kb on - strandat 220.378 kb on - strandat 220.378 kb on - strandat 220.378 kb on - strandat 220.378 kb on - strandat 220.380 kb on + strandat 220.380 kb on + strandat 220.380 kb on + strandat 220.380 kb on + strandat 220.380 kb on + strandat 220.381 kb on - strandat 220.381 kb on - strandat 220.428 kb on + strand, within MPMX19_06945at 220.428 kb on + strand, within MPMX19_06945at 220.428 kb on + strand, within MPMX19_06945at 220.428 kb on + strand, within MPMX19_06945at 220.428 kb on + strand, within MPMX19_06945at 220.428 kb on + strand, within MPMX19_06945at 220.428 kb on + strand, within MPMX19_06945at 220.428 kb on + strand, within MPMX19_06945at 220.428 kb on + strand, within MPMX19_06945at 220.428 kb on + strand, within MPMX19_06945at 220.428 kb on + strand, within MPMX19_06945at 220.428 kb on + strand, within MPMX19_06945at 220.428 kb on + strand, within MPMX19_06945at 220.428 kb on + strand, within MPMX19_06945at 220.429 kb on - strand, within MPMX19_06945at 220.429 kb on - strand, within MPMX19_06945at 220.429 kb on - strand, within MPMX19_06945at 220.429 kb on - strand, within MPMX19_06945at 220.429 kb on - strand, within MPMX19_06945at 220.429 kb on - strand, within MPMX19_06945at 220.429 kb on - strand, within MPMX19_06945at 220.429 kb on - strand, within MPMX19_06945at 220.429 kb on - strand, within MPMX19_06945at 220.429 kb on - strand, within MPMX19_06945at 220.429 kb on - strand, within MPMX19_06945at 220.429 kb on - strand, within MPMX19_06945at 220.429 kb on - strand, within MPMX19_06945at 220.429 kb on - strand, within MPMX19_06945at 220.479 kb on + strand, within MPMX19_06945at 220.479 kb on + strand, within MPMX19_06945at 220.563 kb on + strand, within MPMX19_06945at 220.563 kb on + strand, within MPMX19_06945at 220.563 kb on + strand, within MPMX19_06945at 220.581 kb on + strand, within MPMX19_06945at 220.582 kb on - strand, within MPMX19_06945at 220.674 kb on + strand, within MPMX19_06945at 220.674 kb on + strand, within MPMX19_06945at 220.675 kb on - strand, within MPMX19_06945at 220.878 kb on + strand, within MPMX19_06945at 220.878 kb on + strand, within MPMX19_06945at 220.878 kb on + strand, within MPMX19_06945at 220.878 kb on + strand, within MPMX19_06945at 220.879 kb on - strand, within MPMX19_06945at 220.879 kb on - strand, within MPMX19_06945at 220.879 kb on - strand, within MPMX19_06945at 220.989 kb on + strand, within MPMX19_06945at 220.989 kb on + strand, within MPMX19_06945at 220.990 kb on - strand, within MPMX19_06945at 220.990 kb on - strand, within MPMX19_06945at 221.064 kb on + strand, within MPMX19_06945at 221.064 kb on + strand, within MPMX19_06945at 221.064 kb on + strand, within MPMX19_06945at 221.064 kb on + strand, within MPMX19_06945at 221.064 kb on + strand, within MPMX19_06945at 221.064 kb on + strand, within MPMX19_06945at 221.064 kb on + strand, within MPMX19_06945at 221.065 kb on - strand, within MPMX19_06945at 221.065 kb on - strand, within MPMX19_06945at 221.065 kb on - strand, within MPMX19_06945at 221.065 kb on - strand, within MPMX19_06945at 221.065 kb on - strand, within MPMX19_06945at 221.065 kb on - strand, within MPMX19_06945at 221.073 kb on + strand, within MPMX19_06945at 221.073 kb on + strand, within MPMX19_06945at 221.238 kb on + strand, within MPMX19_06945at 221.238 kb on + strand, within MPMX19_06945at 221.239 kb on - strand, within MPMX19_06945at 221.239 kb on - strand, within MPMX19_06945at 221.239 kb on - strand, within MPMX19_06945at 221.239 kb on - strand, within MPMX19_06945at 221.239 kb on - strand, within MPMX19_06945at 221.388 kb on + strand, within MPMX19_06945at 221.389 kb on - strand, within MPMX19_06945at 221.530 kb on + strandat 221.530 kb on + strandat 221.530 kb on + strandat 221.530 kb on + strandat 221.530 kb on + strandat 221.530 kb on + strandat 221.530 kb on + strandat 221.531 kb on - strandat 221.531 kb on - strandat 221.531 kb on - strandat 221.531 kb on - strandat 221.531 kb on - strandat 221.531 kb on - strandat 221.531 kb on - strandat 221.531 kb on - strandat 221.531 kb on - strandat 221.646 kb on + strandat 221.646 kb on + strandat 221.647 kb on - strandat 221.647 kb on - strandat 221.767 kb on - strand, within MPMX19_06946at 221.824 kb on + strand, within MPMX19_06946at 221.824 kb on + strand, within MPMX19_06946at 221.824 kb on + strand, within MPMX19_06946at 221.824 kb on + strand, within MPMX19_06946at 221.824 kb on + strand, within MPMX19_06946at 221.824 kb on + strand, within MPMX19_06946at 221.824 kb on + strand, within MPMX19_06946at 221.825 kb on - strand, within MPMX19_06946at 221.830 kb on + strand, within MPMX19_06946at 221.830 kb on + strand, within MPMX19_06946at 221.830 kb on + strand, within MPMX19_06946at 221.830 kb on + strand, within MPMX19_06946at 221.830 kb on + strand, within MPMX19_06946at 221.831 kb on - strand, within MPMX19_06946at 221.849 kb on - strand, within MPMX19_06946at 221.849 kb on - strand, within MPMX19_06946at 221.911 kb on + strand, within MPMX19_06946at 221.911 kb on + strand, within MPMX19_06946at 221.911 kb on + strand, within MPMX19_06946at 221.912 kb on - strand, within MPMX19_06946at 221.912 kb on - strand, within MPMX19_06946at 221.917 kb on + strand, within MPMX19_06946at 221.917 kb on + strand, within MPMX19_06946at 221.917 kb on + strand, within MPMX19_06946at 221.917 kb on + strand, within MPMX19_06946at 221.918 kb on - strand, within MPMX19_06946at 221.918 kb on - strand, within MPMX19_06946at 221.918 kb on - strand, within MPMX19_06946at 221.956 kb on + strand, within MPMX19_06946at 221.956 kb on + strand, within MPMX19_06946at 221.956 kb on + strand, within MPMX19_06946at 221.956 kb on + strand, within MPMX19_06946at 221.956 kb on + strand, within MPMX19_06946at 221.956 kb on + strand, within MPMX19_06946at 221.957 kb on - strand, within MPMX19_06946at 221.957 kb on - strand, within MPMX19_06946at 221.957 kb on - strand, within MPMX19_06946at 221.957 kb on - strand, within MPMX19_06946at 221.957 kb on - strand, within MPMX19_06946at 221.957 kb on - strand, within MPMX19_06946at 221.957 kb on - strand, within MPMX19_06946at 221.957 kb on - strand, within MPMX19_06946at 221.957 kb on - strand, within MPMX19_06946at 222.076 kb on + strand, within MPMX19_06946at 222.076 kb on + strand, within MPMX19_06946at 222.076 kb on + strand, within MPMX19_06946at 222.076 kb on + strand, within MPMX19_06946at 222.077 kb on - strand, within MPMX19_06946at 222.077 kb on - strand, within MPMX19_06946at 222.079 kb on + strand, within MPMX19_06946at 222.080 kb on - strand, within MPMX19_06946at 222.080 kb on - strand, within MPMX19_06946at 222.080 kb on - strand, within MPMX19_06946at 222.162 kb on - strand, within MPMX19_06946at 222.162 kb on - strand, within MPMX19_06946at 222.241 kb on + strand, within MPMX19_06946at 222.241 kb on + strand, within MPMX19_06946at 222.242 kb on - strand, within MPMX19_06946at 222.263 kb on - strand, within MPMX19_06946at 222.263 kb on - strand, within MPMX19_06946at 222.263 kb on - strand, within MPMX19_06946at 222.408 kb on + strand, within MPMX19_06946at 222.408 kb on + strand, within MPMX19_06946at 222.409 kb on - strand, within MPMX19_06946at 222.409 kb on - strand, within MPMX19_06946at 222.442 kb on + strandat 222.442 kb on + strandat 222.443 kb on - strandat 222.466 kb on + strandat 222.466 kb on + strandat 222.467 kb on - strandat 222.481 kb on + strandat 222.481 kb on + strandat 222.481 kb on + strandat 222.482 kb on - strandat 222.482 kb on - strandat 222.482 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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220,377 + +0.1
220,377 + -2.8
220,377 + +1.0
220,377 + -0.0
220,377 + +0.3
220,377 + +0.8
220,378 - -0.9
220,378 - -1.1
220,378 - -1.2
220,378 - -0.5
220,378 - +0.6
220,378 - -0.1
220,378 - +0.8
220,378 - -2.6
220,378 - -0.0
220,378 - +0.3
220,380 + -0.6
220,380 + -0.9
220,380 + +0.9
220,380 + -1.5
220,380 + -0.0
220,381 - -0.9
220,381 - -1.3
220,428 + MPMX19_06945 0.10 -0.5
220,428 + MPMX19_06945 0.10 -0.7
220,428 + MPMX19_06945 0.10 -0.1
220,428 + MPMX19_06945 0.10 -1.5
220,428 + MPMX19_06945 0.10 -1.2
220,428 + MPMX19_06945 0.10 -0.4
220,428 + MPMX19_06945 0.10 -0.5
220,428 + MPMX19_06945 0.10 -1.4
220,428 + MPMX19_06945 0.10 -0.5
220,428 + MPMX19_06945 0.10 -0.8
220,428 + MPMX19_06945 0.10 +0.1
220,428 + MPMX19_06945 0.10 +1.1
220,428 + MPMX19_06945 0.10 -0.9
220,428 + MPMX19_06945 0.10 -0.1
220,429 - MPMX19_06945 0.11 -0.1
220,429 - MPMX19_06945 0.11 -2.0
220,429 - MPMX19_06945 0.11 -1.0
220,429 - MPMX19_06945 0.11 +0.1
220,429 - MPMX19_06945 0.11 +0.5
220,429 - MPMX19_06945 0.11 +0.3
220,429 - MPMX19_06945 0.11 +1.2
220,429 - MPMX19_06945 0.11 -1.4
220,429 - MPMX19_06945 0.11 -0.1
220,429 - MPMX19_06945 0.11 -0.0
220,429 - MPMX19_06945 0.11 -0.9
220,429 - MPMX19_06945 0.11 -3.5
220,429 - MPMX19_06945 0.11 -0.4
220,429 - MPMX19_06945 0.11 -0.8
220,479 + MPMX19_06945 0.15 -0.9
220,479 + MPMX19_06945 0.15 -2.1
220,563 + MPMX19_06945 0.21 +0.1
220,563 + MPMX19_06945 0.21 +1.7
220,563 + MPMX19_06945 0.21 -1.0
220,581 + MPMX19_06945 0.23 -0.4
220,582 - MPMX19_06945 0.23 -0.2
220,674 + MPMX19_06945 0.30 -0.5
220,674 + MPMX19_06945 0.30 -0.4
220,675 - MPMX19_06945 0.30 -0.5
220,878 + MPMX19_06945 0.47 -1.7
220,878 + MPMX19_06945 0.47 -0.8
220,878 + MPMX19_06945 0.47 -1.4
220,878 + MPMX19_06945 0.47 +1.0
220,879 - MPMX19_06945 0.47 +0.4
220,879 - MPMX19_06945 0.47 -0.2
220,879 - MPMX19_06945 0.47 -0.5
220,989 + MPMX19_06945 0.56 -2.0
220,989 + MPMX19_06945 0.56 -1.8
220,990 - MPMX19_06945 0.56 -0.7
220,990 - MPMX19_06945 0.56 -0.5
221,064 + MPMX19_06945 0.62 -2.5
221,064 + MPMX19_06945 0.62 -0.2
221,064 + MPMX19_06945 0.62 -1.2
221,064 + MPMX19_06945 0.62 +0.4
221,064 + MPMX19_06945 0.62 +0.5
221,064 + MPMX19_06945 0.62 +1.7
221,064 + MPMX19_06945 0.62 -2.0
221,065 - MPMX19_06945 0.62 -0.8
221,065 - MPMX19_06945 0.62 +0.7
221,065 - MPMX19_06945 0.62 +0.2
221,065 - MPMX19_06945 0.62 -0.1
221,065 - MPMX19_06945 0.62 +0.5
221,065 - MPMX19_06945 0.62 +0.1
221,073 + MPMX19_06945 0.62 -0.7
221,073 + MPMX19_06945 0.62 -0.2
221,238 + MPMX19_06945 0.76 -2.1
221,238 + MPMX19_06945 0.76 -1.8
221,239 - MPMX19_06945 0.76 -0.3
221,239 - MPMX19_06945 0.76 -1.2
221,239 - MPMX19_06945 0.76 -0.2
221,239 - MPMX19_06945 0.76 +1.2
221,239 - MPMX19_06945 0.76 -2.0
221,388 + MPMX19_06945 0.88 +1.6
221,389 - MPMX19_06945 0.88 -0.7
221,530 + -0.7
221,530 + -0.6
221,530 + +0.3
221,530 + +0.6
221,530 + -0.3
221,530 + -0.2
221,530 + -1.3
221,531 - -0.7
221,531 - -1.9
221,531 - -0.1
221,531 - -2.1
221,531 - -0.6
221,531 - -1.8
221,531 - -1.0
221,531 - -0.5
221,531 - +0.2
221,646 + -1.0
221,646 + -0.4
221,647 - -0.6
221,647 - +0.7
221,767 - MPMX19_06946 0.12 -0.2
221,824 + MPMX19_06946 0.18 -0.7
221,824 + MPMX19_06946 0.18 -1.5
221,824 + MPMX19_06946 0.18 -1.5
221,824 + MPMX19_06946 0.18 -0.5
221,824 + MPMX19_06946 0.18 -0.9
221,824 + MPMX19_06946 0.18 +0.7
221,824 + MPMX19_06946 0.18 -0.5
221,825 - MPMX19_06946 0.19 +0.2
221,830 + MPMX19_06946 0.19 -0.1
221,830 + MPMX19_06946 0.19 -1.6
221,830 + MPMX19_06946 0.19 -1.2
221,830 + MPMX19_06946 0.19 +0.7
221,830 + MPMX19_06946 0.19 -0.6
221,831 - MPMX19_06946 0.19 -1.1
221,849 - MPMX19_06946 0.21 -1.5
221,849 - MPMX19_06946 0.21 -1.2
221,911 + MPMX19_06946 0.29 -0.7
221,911 + MPMX19_06946 0.29 -0.0
221,911 + MPMX19_06946 0.29 -2.2
221,912 - MPMX19_06946 0.29 +1.1
221,912 - MPMX19_06946 0.29 -0.7
221,917 + MPMX19_06946 0.29 -1.3
221,917 + MPMX19_06946 0.29 -1.8
221,917 + MPMX19_06946 0.29 +1.1
221,917 + MPMX19_06946 0.29 +1.9
221,918 - MPMX19_06946 0.30 +2.1
221,918 - MPMX19_06946 0.30 +0.2
221,918 - MPMX19_06946 0.30 +0.0
221,956 + MPMX19_06946 0.34 -1.1
221,956 + MPMX19_06946 0.34 -0.1
221,956 + MPMX19_06946 0.34 -0.1
221,956 + MPMX19_06946 0.34 -0.4
221,956 + MPMX19_06946 0.34 -1.2
221,956 + MPMX19_06946 0.34 -0.7
221,957 - MPMX19_06946 0.34 -0.5
221,957 - MPMX19_06946 0.34 -0.7
221,957 - MPMX19_06946 0.34 -2.2
221,957 - MPMX19_06946 0.34 -2.4
221,957 - MPMX19_06946 0.34 -0.6
221,957 - MPMX19_06946 0.34 -0.9
221,957 - MPMX19_06946 0.34 -0.1
221,957 - MPMX19_06946 0.34 -0.8
221,957 - MPMX19_06946 0.34 -0.8
222,076 + MPMX19_06946 0.48 -0.8
222,076 + MPMX19_06946 0.48 -1.8
222,076 + MPMX19_06946 0.48 +0.8
222,076 + MPMX19_06946 0.48 -3.4
222,077 - MPMX19_06946 0.48 -0.7
222,077 - MPMX19_06946 0.48 -0.6
222,079 + MPMX19_06946 0.49 -1.8
222,080 - MPMX19_06946 0.49 +0.5
222,080 - MPMX19_06946 0.49 -0.2
222,080 - MPMX19_06946 0.49 -1.5
222,162 - MPMX19_06946 0.58 -0.5
222,162 - MPMX19_06946 0.58 +0.1
222,241 + MPMX19_06946 0.68 +1.3
222,241 + MPMX19_06946 0.68 +1.2
222,242 - MPMX19_06946 0.68 -2.4
222,263 - MPMX19_06946 0.70 +0.2
222,263 - MPMX19_06946 0.70 +0.9
222,263 - MPMX19_06946 0.70 -0.4
222,408 + MPMX19_06946 0.87 +0.2
222,408 + MPMX19_06946 0.87 -1.1
222,409 - MPMX19_06946 0.87 +0.4
222,409 - MPMX19_06946 0.87 +1.6
222,442 + +1.5
222,442 + -1.4
222,443 - -0.4
222,466 + +0.2
222,466 + -0.2
222,467 - -0.4
222,481 + -1.5
222,481 + +0.6
222,481 + -0.1
222,482 - -0.4
222,482 - -0.7
222,482 - +0.3

Or see this region's nucleotide sequence