Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06923

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06921 and MPMX19_06922 overlap by 32 nucleotidesMPMX19_06922 and MPMX19_06923 are separated by 29 nucleotidesMPMX19_06923 and MPMX19_06924 overlap by 46 nucleotides MPMX19_06921: MPMX19_06921 - hypothetical protein, at 196,745 to 197,320 _06921 MPMX19_06922: MPMX19_06922 - hypothetical protein, at 197,289 to 197,678 _06922 MPMX19_06923: MPMX19_06923 - hypothetical protein, at 197,708 to 198,541 _06923 MPMX19_06924: MPMX19_06924 - hypothetical protein, at 198,496 to 199,911 _06924 Position (kb) 197 198 199Strain fitness (log2 ratio) -2 -1 0 1 2at 196.714 kb on + strandat 196.714 kb on + strandat 196.714 kb on + strandat 196.714 kb on + strandat 196.762 kb on - strandat 196.789 kb on + strandat 196.789 kb on + strandat 196.789 kb on + strandat 196.789 kb on + strandat 196.789 kb on + strandat 196.789 kb on + strandat 196.789 kb on + strandat 196.789 kb on + strandat 196.789 kb on + strandat 196.789 kb on + strandat 196.789 kb on + strandat 196.790 kb on - strandat 196.790 kb on - strandat 196.790 kb on - strandat 196.790 kb on - strandat 196.790 kb on - strandat 196.790 kb on - strandat 196.790 kb on - strandat 196.790 kb on - strandat 196.790 kb on - strandat 196.853 kb on + strand, within MPMX19_06921at 196.853 kb on + strand, within MPMX19_06921at 196.854 kb on - strand, within MPMX19_06921at 196.854 kb on - strand, within MPMX19_06921at 196.854 kb on - strand, within MPMX19_06921at 196.904 kb on + strand, within MPMX19_06921at 197.051 kb on + strand, within MPMX19_06921at 197.051 kb on + strand, within MPMX19_06921at 197.052 kb on - strand, within MPMX19_06921at 197.127 kb on - strand, within MPMX19_06921at 197.163 kb on - strand, within MPMX19_06921at 197.163 kb on - strand, within MPMX19_06921at 197.163 kb on - strand, within MPMX19_06921at 197.163 kb on - strand, within MPMX19_06921at 197.163 kb on - strand, within MPMX19_06921at 197.163 kb on - strand, within MPMX19_06921at 197.288 kb on + strandat 197.318 kb on + strandat 197.318 kb on + strandat 197.318 kb on + strandat 197.319 kb on - strandat 197.319 kb on - strandat 197.319 kb on - strandat 197.319 kb on - strandat 197.619 kb on + strand, within MPMX19_06922at 197.620 kb on - strand, within MPMX19_06922at 197.711 kb on + strandat 197.711 kb on + strandat 197.711 kb on + strandat 197.711 kb on + strandat 197.711 kb on + strandat 197.711 kb on + strandat 197.712 kb on - strandat 197.712 kb on - strandat 197.712 kb on - strandat 197.712 kb on - strandat 197.712 kb on - strandat 198.125 kb on + strand, within MPMX19_06923at 198.125 kb on + strand, within MPMX19_06923at 198.212 kb on + strand, within MPMX19_06923at 198.212 kb on + strand, within MPMX19_06923at 198.212 kb on + strand, within MPMX19_06923at 198.212 kb on + strand, within MPMX19_06923at 198.213 kb on - strand, within MPMX19_06923at 198.213 kb on - strand, within MPMX19_06923at 198.213 kb on - strand, within MPMX19_06923at 198.213 kb on - strand, within MPMX19_06923at 198.213 kb on - strand, within MPMX19_06923at 198.495 kb on + strandat 198.625 kb on + strandat 198.625 kb on + strandat 198.625 kb on + strandat 198.625 kb on + strandat 198.625 kb on + strandat 198.625 kb on + strandat 198.625 kb on + strandat 198.625 kb on + strandat 198.626 kb on - strandat 198.626 kb on - strandat 198.626 kb on - strandat 198.626 kb on - strandat 198.626 kb on - strandat 198.626 kb on - strandat 198.626 kb on - strandat 198.626 kb on - strandat 198.626 kb on - strandat 198.626 kb on - strandat 198.626 kb on - strandat 198.626 kb on - strandat 198.626 kb on - strandat 198.626 kb on - strandat 198.626 kb on - strandat 198.626 kb on - strandat 198.626 kb on - strandat 198.626 kb on - strandat 198.626 kb on - strandat 198.905 kb on - strand, within MPMX19_06924at 198.905 kb on - strand, within MPMX19_06924at 198.925 kb on + strand, within MPMX19_06924at 198.925 kb on + strand, within MPMX19_06924at 198.931 kb on + strand, within MPMX19_06924at 199.140 kb on + strand, within MPMX19_06924at 199.140 kb on + strand, within MPMX19_06924at 199.140 kb on + strand, within MPMX19_06924at 199.140 kb on + strand, within MPMX19_06924at 199.140 kb on + strand, within MPMX19_06924at 199.140 kb on + strand, within MPMX19_06924at 199.141 kb on - strand, within MPMX19_06924at 199.141 kb on - strand, within MPMX19_06924at 199.141 kb on - strand, within MPMX19_06924at 199.141 kb on - strand, within MPMX19_06924at 199.141 kb on - strand, within MPMX19_06924at 199.141 kb on - strand, within MPMX19_06924

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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196,714 + -2.2
196,714 + -0.2
196,714 + -0.1
196,714 + -0.6
196,762 - +0.3
196,789 + -0.3
196,789 + -0.8
196,789 + +0.5
196,789 + -1.6
196,789 + -1.4
196,789 + +0.7
196,789 + -0.2
196,789 + +0.1
196,789 + +0.1
196,789 + -2.2
196,789 + -0.9
196,790 - +0.1
196,790 - -1.7
196,790 - -0.1
196,790 - -0.5
196,790 - -0.4
196,790 - -1.1
196,790 - +0.3
196,790 - -0.0
196,790 - -0.2
196,853 + MPMX19_06921 0.19 -2.1
196,853 + MPMX19_06921 0.19 -0.4
196,854 - MPMX19_06921 0.19 +0.3
196,854 - MPMX19_06921 0.19 -1.6
196,854 - MPMX19_06921 0.19 -0.7
196,904 + MPMX19_06921 0.28 -0.1
197,051 + MPMX19_06921 0.53 -0.3
197,051 + MPMX19_06921 0.53 -0.3
197,052 - MPMX19_06921 0.53 +0.1
197,127 - MPMX19_06921 0.66 -1.1
197,163 - MPMX19_06921 0.73 +0.1
197,163 - MPMX19_06921 0.73 +0.3
197,163 - MPMX19_06921 0.73 -0.9
197,163 - MPMX19_06921 0.73 +0.1
197,163 - MPMX19_06921 0.73 -2.7
197,163 - MPMX19_06921 0.73 -0.4
197,288 + -0.2
197,318 + +0.3
197,318 + -1.6
197,318 + +0.2
197,319 - -0.1
197,319 - +0.1
197,319 - +0.2
197,319 - +0.5
197,619 + MPMX19_06922 0.85 +0.8
197,620 - MPMX19_06922 0.85 +0.9
197,711 + -0.2
197,711 + +0.1
197,711 + -1.1
197,711 + -0.2
197,711 + -1.2
197,711 + +1.3
197,712 - +0.5
197,712 - -1.1
197,712 - +0.1
197,712 - +0.8
197,712 - +1.1
198,125 + MPMX19_06923 0.50 -2.4
198,125 + MPMX19_06923 0.50 -0.5
198,212 + MPMX19_06923 0.60 -0.0
198,212 + MPMX19_06923 0.60 -0.1
198,212 + MPMX19_06923 0.60 +0.4
198,212 + MPMX19_06923 0.60 -0.4
198,213 - MPMX19_06923 0.61 +0.8
198,213 - MPMX19_06923 0.61 +0.4
198,213 - MPMX19_06923 0.61 +1.1
198,213 - MPMX19_06923 0.61 -0.5
198,213 - MPMX19_06923 0.61 -1.2
198,495 + +0.4
198,625 + -2.7
198,625 + -1.1
198,625 + -0.8
198,625 + +0.1
198,625 + -0.6
198,625 + -0.1
198,625 + -1.1
198,625 + +0.1
198,626 - -0.2
198,626 - +0.2
198,626 - -0.1
198,626 - +0.6
198,626 - -1.4
198,626 - +0.5
198,626 - +0.6
198,626 - -0.1
198,626 - -1.8
198,626 - -0.5
198,626 - -0.9
198,626 - -0.2
198,626 - -2.0
198,626 - +0.3
198,626 - +0.4
198,626 - +0.2
198,626 - -0.9
198,626 - -1.3
198,626 - -0.7
198,905 - MPMX19_06924 0.29 +2.1
198,905 - MPMX19_06924 0.29 -1.1
198,925 + MPMX19_06924 0.30 -0.0
198,925 + MPMX19_06924 0.30 -0.2
198,931 + MPMX19_06924 0.31 +0.1
199,140 + MPMX19_06924 0.45 -1.2
199,140 + MPMX19_06924 0.45 +0.3
199,140 + MPMX19_06924 0.45 +1.1
199,140 + MPMX19_06924 0.45 -0.6
199,140 + MPMX19_06924 0.45 +0.3
199,140 + MPMX19_06924 0.45 -0.1
199,141 - MPMX19_06924 0.46 +0.3
199,141 - MPMX19_06924 0.46 -0.5
199,141 - MPMX19_06924 0.46 +0.7
199,141 - MPMX19_06924 0.46 -0.9
199,141 - MPMX19_06924 0.46 -0.2
199,141 - MPMX19_06924 0.46 -0.8

Or see this region's nucleotide sequence