Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06911

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06910 and MPMX19_06911 overlap by 4 nucleotidesMPMX19_06911 and MPMX19_06912 are separated by 1 nucleotidesMPMX19_06912 and MPMX19_06913 are separated by 103 nucleotides MPMX19_06910: MPMX19_06910 - hypothetical protein, at 185,838 to 186,872 _06910 MPMX19_06911: MPMX19_06911 - Lipopolysaccharide export system ATP-binding protein LptB, at 186,869 to 187,624 _06911 MPMX19_06912: MPMX19_06912 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 187,626 to 188,369 _06912 MPMX19_06913: MPMX19_06913 - D-galactarolactone cycloisomerase, at 188,473 to 189,573 _06913 Position (kb) 186 187 188Strain fitness (log2 ratio) -2 -1 0 1 2at 185.925 kb on + strandat 185.925 kb on + strandat 185.926 kb on - strandat 185.926 kb on - strandat 185.958 kb on + strand, within MPMX19_06910at 185.958 kb on + strand, within MPMX19_06910at 185.959 kb on - strand, within MPMX19_06910at 185.959 kb on - strand, within MPMX19_06910at 185.997 kb on + strand, within MPMX19_06910at 185.998 kb on - strand, within MPMX19_06910at 186.048 kb on + strand, within MPMX19_06910at 186.048 kb on + strand, within MPMX19_06910at 186.048 kb on + strand, within MPMX19_06910at 186.048 kb on + strand, within MPMX19_06910at 186.048 kb on + strand, within MPMX19_06910at 186.175 kb on - strand, within MPMX19_06910at 186.175 kb on - strand, within MPMX19_06910at 186.175 kb on - strand, within MPMX19_06910at 186.175 kb on - strand, within MPMX19_06910at 186.175 kb on - strand, within MPMX19_06910at 186.309 kb on + strand, within MPMX19_06910at 186.310 kb on - strand, within MPMX19_06910at 186.310 kb on - strand, within MPMX19_06910at 186.310 kb on - strand, within MPMX19_06910at 186.310 kb on - strand, within MPMX19_06910at 186.310 kb on - strand, within MPMX19_06910at 186.522 kb on + strand, within MPMX19_06910at 186.522 kb on + strand, within MPMX19_06910at 186.522 kb on + strand, within MPMX19_06910at 186.522 kb on + strand, within MPMX19_06910at 186.522 kb on + strand, within MPMX19_06910at 186.523 kb on - strand, within MPMX19_06910at 186.523 kb on - strand, within MPMX19_06910at 186.523 kb on - strand, within MPMX19_06910at 186.523 kb on - strand, within MPMX19_06910at 186.523 kb on - strand, within MPMX19_06910at 186.523 kb on - strand, within MPMX19_06910at 186.523 kb on - strand, within MPMX19_06910at 186.684 kb on + strand, within MPMX19_06910at 186.685 kb on - strand, within MPMX19_06910at 187.023 kb on - strand, within MPMX19_06911at 187.023 kb on - strand, within MPMX19_06911at 187.025 kb on + strand, within MPMX19_06911at 187.025 kb on + strand, within MPMX19_06911at 187.025 kb on + strand, within MPMX19_06911at 187.025 kb on + strand, within MPMX19_06911at 187.025 kb on + strand, within MPMX19_06911at 187.025 kb on + strand, within MPMX19_06911at 187.026 kb on - strand, within MPMX19_06911at 187.026 kb on - strand, within MPMX19_06911at 187.026 kb on - strand, within MPMX19_06911at 187.026 kb on - strand, within MPMX19_06911at 187.026 kb on - strand, within MPMX19_06911at 187.026 kb on - strand, within MPMX19_06911at 187.295 kb on + strand, within MPMX19_06911at 187.296 kb on - strand, within MPMX19_06911at 187.296 kb on - strand, within MPMX19_06911at 187.498 kb on + strand, within MPMX19_06911at 187.498 kb on + strand, within MPMX19_06911at 187.499 kb on - strand, within MPMX19_06911at 187.610 kb on + strandat 187.610 kb on + strandat 187.610 kb on + strandat 187.610 kb on + strandat 187.610 kb on + strandat 187.610 kb on + strandat 187.965 kb on + strand, within MPMX19_06912at 187.965 kb on + strand, within MPMX19_06912at 187.965 kb on + strand, within MPMX19_06912at 187.965 kb on + strand, within MPMX19_06912at 187.965 kb on + strand, within MPMX19_06912at 187.965 kb on + strand, within MPMX19_06912at 187.965 kb on + strand, within MPMX19_06912at 187.965 kb on + strand, within MPMX19_06912at 187.965 kb on + strand, within MPMX19_06912at 187.965 kb on + strand, within MPMX19_06912at 187.965 kb on + strand, within MPMX19_06912at 187.966 kb on - strand, within MPMX19_06912at 187.966 kb on - strand, within MPMX19_06912at 187.966 kb on - strand, within MPMX19_06912at 187.966 kb on - strand, within MPMX19_06912at 187.966 kb on - strand, within MPMX19_06912at 187.966 kb on - strand, within MPMX19_06912at 187.966 kb on - strand, within MPMX19_06912at 187.966 kb on - strand, within MPMX19_06912at 188.010 kb on + strand, within MPMX19_06912at 188.010 kb on + strand, within MPMX19_06912at 188.010 kb on + strand, within MPMX19_06912at 188.010 kb on + strand, within MPMX19_06912at 188.010 kb on + strand, within MPMX19_06912at 188.011 kb on - strand, within MPMX19_06912at 188.011 kb on - strand, within MPMX19_06912at 188.011 kb on - strand, within MPMX19_06912at 188.011 kb on - strand, within MPMX19_06912at 188.011 kb on - strand, within MPMX19_06912at 188.011 kb on - strand, within MPMX19_06912at 188.265 kb on + strand, within MPMX19_06912at 188.265 kb on + strand, within MPMX19_06912at 188.265 kb on + strand, within MPMX19_06912at 188.266 kb on - strand, within MPMX19_06912at 188.271 kb on + strand, within MPMX19_06912at 188.271 kb on + strand, within MPMX19_06912at 188.271 kb on + strand, within MPMX19_06912at 188.271 kb on + strand, within MPMX19_06912at 188.271 kb on + strand, within MPMX19_06912at 188.271 kb on + strand, within MPMX19_06912at 188.272 kb on - strand, within MPMX19_06912at 188.272 kb on - strand, within MPMX19_06912at 188.272 kb on - strand, within MPMX19_06912at 188.349 kb on + strandat 188.350 kb on - strandat 188.350 kb on - strandat 188.572 kb on + strandat 188.572 kb on + strandat 188.572 kb on + strandat 188.572 kb on + strandat 188.573 kb on - strandat 188.573 kb on - strandat 188.573 kb on - strandat 188.573 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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185,925 + -1.4
185,925 + -0.9
185,926 - -0.7
185,926 - -0.2
185,958 + MPMX19_06910 0.12 -1.5
185,958 + MPMX19_06910 0.12 -0.9
185,959 - MPMX19_06910 0.12 -0.8
185,959 - MPMX19_06910 0.12 +0.2
185,997 + MPMX19_06910 0.15 +1.8
185,998 - MPMX19_06910 0.15 -0.2
186,048 + MPMX19_06910 0.20 +0.0
186,048 + MPMX19_06910 0.20 +0.3
186,048 + MPMX19_06910 0.20 -0.7
186,048 + MPMX19_06910 0.20 -1.6
186,048 + MPMX19_06910 0.20 -0.2
186,175 - MPMX19_06910 0.33 -0.8
186,175 - MPMX19_06910 0.33 +0.3
186,175 - MPMX19_06910 0.33 +0.7
186,175 - MPMX19_06910 0.33 -0.7
186,175 - MPMX19_06910 0.33 -1.0
186,309 + MPMX19_06910 0.46 -0.4
186,310 - MPMX19_06910 0.46 +0.1
186,310 - MPMX19_06910 0.46 -0.1
186,310 - MPMX19_06910 0.46 -0.8
186,310 - MPMX19_06910 0.46 -0.3
186,310 - MPMX19_06910 0.46 -1.1
186,522 + MPMX19_06910 0.66 -0.1
186,522 + MPMX19_06910 0.66 -0.7
186,522 + MPMX19_06910 0.66 -0.9
186,522 + MPMX19_06910 0.66 -0.7
186,522 + MPMX19_06910 0.66 +0.1
186,523 - MPMX19_06910 0.66 -1.0
186,523 - MPMX19_06910 0.66 -1.5
186,523 - MPMX19_06910 0.66 -1.3
186,523 - MPMX19_06910 0.66 -0.7
186,523 - MPMX19_06910 0.66 -0.5
186,523 - MPMX19_06910 0.66 -1.5
186,523 - MPMX19_06910 0.66 -0.2
186,684 + MPMX19_06910 0.82 -2.7
186,685 - MPMX19_06910 0.82 +0.8
187,023 - MPMX19_06911 0.20 -1.5
187,023 - MPMX19_06911 0.20 -0.3
187,025 + MPMX19_06911 0.21 -0.9
187,025 + MPMX19_06911 0.21 -1.0
187,025 + MPMX19_06911 0.21 -0.3
187,025 + MPMX19_06911 0.21 -1.2
187,025 + MPMX19_06911 0.21 +1.7
187,025 + MPMX19_06911 0.21 -0.4
187,026 - MPMX19_06911 0.21 -0.6
187,026 - MPMX19_06911 0.21 +1.1
187,026 - MPMX19_06911 0.21 +0.7
187,026 - MPMX19_06911 0.21 -0.2
187,026 - MPMX19_06911 0.21 +0.1
187,026 - MPMX19_06911 0.21 +0.1
187,295 + MPMX19_06911 0.56 +0.4
187,296 - MPMX19_06911 0.56 +0.5
187,296 - MPMX19_06911 0.56 +0.0
187,498 + MPMX19_06911 0.83 -0.6
187,498 + MPMX19_06911 0.83 -0.7
187,499 - MPMX19_06911 0.83 +0.5
187,610 + +0.3
187,610 + +0.9
187,610 + +0.4
187,610 + +0.7
187,610 + +0.2
187,610 + +0.3
187,965 + MPMX19_06912 0.46 +0.8
187,965 + MPMX19_06912 0.46 +0.3
187,965 + MPMX19_06912 0.46 -0.1
187,965 + MPMX19_06912 0.46 +1.3
187,965 + MPMX19_06912 0.46 +1.4
187,965 + MPMX19_06912 0.46 +0.6
187,965 + MPMX19_06912 0.46 -1.1
187,965 + MPMX19_06912 0.46 -1.2
187,965 + MPMX19_06912 0.46 -0.8
187,965 + MPMX19_06912 0.46 +0.2
187,965 + MPMX19_06912 0.46 -0.5
187,966 - MPMX19_06912 0.46 +1.1
187,966 - MPMX19_06912 0.46 +1.2
187,966 - MPMX19_06912 0.46 +0.3
187,966 - MPMX19_06912 0.46 -0.7
187,966 - MPMX19_06912 0.46 +0.3
187,966 - MPMX19_06912 0.46 -0.6
187,966 - MPMX19_06912 0.46 +0.3
187,966 - MPMX19_06912 0.46 -1.4
188,010 + MPMX19_06912 0.52 +1.3
188,010 + MPMX19_06912 0.52 -0.1
188,010 + MPMX19_06912 0.52 +1.1
188,010 + MPMX19_06912 0.52 -1.2
188,010 + MPMX19_06912 0.52 -0.1
188,011 - MPMX19_06912 0.52 +1.3
188,011 - MPMX19_06912 0.52 +1.5
188,011 - MPMX19_06912 0.52 -0.5
188,011 - MPMX19_06912 0.52 -2.0
188,011 - MPMX19_06912 0.52 -1.0
188,011 - MPMX19_06912 0.52 -1.1
188,265 + MPMX19_06912 0.86 -1.4
188,265 + MPMX19_06912 0.86 -1.5
188,265 + MPMX19_06912 0.86 -1.8
188,266 - MPMX19_06912 0.86 +1.3
188,271 + MPMX19_06912 0.87 +0.1
188,271 + MPMX19_06912 0.87 +0.4
188,271 + MPMX19_06912 0.87 -0.4
188,271 + MPMX19_06912 0.87 -1.5
188,271 + MPMX19_06912 0.87 -1.7
188,271 + MPMX19_06912 0.87 +0.3
188,272 - MPMX19_06912 0.87 -1.0
188,272 - MPMX19_06912 0.87 -0.5
188,272 - MPMX19_06912 0.87 +0.3
188,349 + +0.9
188,350 - +0.1
188,350 - +0.3
188,572 + +1.4
188,572 + -0.2
188,572 + +0.5
188,572 + -1.6
188,573 - -1.4
188,573 - -0.1
188,573 - +0.1
188,573 - +0.2

Or see this region's nucleotide sequence