Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06888 and MPMX19_06889 are separated by 9 nucleotides MPMX19_06889 and MPMX19_06890 overlap by 1 nucleotides
MPMX19_06888: MPMX19_06888 - hypothetical protein, at 160,511 to 161,962
_06888
MPMX19_06889: MPMX19_06889 - Dimethyl sulfoxide/trimethylamine N-oxide reductase, at 161,972 to 164,272
_06889
MPMX19_06890: MPMX19_06890 - hypothetical protein, at 164,272 to 165,309
_06890
Position (kb) 161
162
163
164
165 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 161.681 kb on + strand, within MPMX19_06888 at 161.681 kb on + strand, within MPMX19_06888 at 161.681 kb on + strand, within MPMX19_06888 at 161.681 kb on + strand, within MPMX19_06888 at 161.681 kb on + strand, within MPMX19_06888 at 161.681 kb on + strand, within MPMX19_06888 at 161.682 kb on - strand, within MPMX19_06888 at 161.682 kb on - strand, within MPMX19_06888 at 161.682 kb on - strand, within MPMX19_06888 at 161.682 kb on - strand, within MPMX19_06888 at 161.682 kb on - strand, within MPMX19_06888 at 161.858 kb on + strand at 161.858 kb on + strand at 161.858 kb on + strand at 161.858 kb on + strand at 161.858 kb on + strand at 161.858 kb on + strand at 161.859 kb on - strand at 161.859 kb on - strand at 161.859 kb on - strand at 161.859 kb on - strand at 161.859 kb on - strand at 161.859 kb on - strand at 161.859 kb on - strand at 161.859 kb on - strand at 161.859 kb on - strand at 161.859 kb on - strand at 161.859 kb on - strand at 161.859 kb on - strand at 162.168 kb on + strand at 162.168 kb on + strand at 162.169 kb on - strand at 162.370 kb on - strand, within MPMX19_06889 at 162.370 kb on - strand, within MPMX19_06889 at 162.370 kb on - strand, within MPMX19_06889 at 162.370 kb on - strand, within MPMX19_06889 at 162.370 kb on - strand, within MPMX19_06889 at 162.370 kb on - strand, within MPMX19_06889 at 163.062 kb on + strand, within MPMX19_06889 at 163.062 kb on + strand, within MPMX19_06889 at 163.063 kb on - strand, within MPMX19_06889 at 163.063 kb on - strand, within MPMX19_06889 at 163.063 kb on - strand, within MPMX19_06889 at 163.443 kb on + strand, within MPMX19_06889 at 163.443 kb on + strand, within MPMX19_06889 at 163.444 kb on - strand, within MPMX19_06889 at 163.444 kb on - strand, within MPMX19_06889 at 163.845 kb on + strand, within MPMX19_06889 at 163.866 kb on + strand, within MPMX19_06889 at 163.941 kb on + strand, within MPMX19_06889 at 163.941 kb on + strand, within MPMX19_06889 at 163.941 kb on + strand, within MPMX19_06889 at 164.230 kb on - strand at 164.418 kb on - strand, within MPMX19_06890 at 164.418 kb on - strand, within MPMX19_06890 at 164.418 kb on - strand, within MPMX19_06890 at 164.418 kb on - strand, within MPMX19_06890 at 164.418 kb on - strand, within MPMX19_06890 at 164.577 kb on - strand, within MPMX19_06890 at 164.577 kb on - strand, within MPMX19_06890 at 164.577 kb on - strand, within MPMX19_06890 at 164.577 kb on - strand, within MPMX19_06890 at 164.577 kb on - strand, within MPMX19_06890 at 164.639 kb on + strand, within MPMX19_06890 at 164.639 kb on + strand, within MPMX19_06890 at 164.639 kb on + strand, within MPMX19_06890 at 164.639 kb on + strand, within MPMX19_06890 at 164.735 kb on + strand, within MPMX19_06890 at 164.904 kb on - strand, within MPMX19_06890 at 164.904 kb on - strand, within MPMX19_06890 at 164.904 kb on - strand, within MPMX19_06890 at 164.904 kb on - strand, within MPMX19_06890
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 161,681 + MPMX19_06888 0.81 -0.7 161,681 + MPMX19_06888 0.81 -1.5 161,681 + MPMX19_06888 0.81 +1.8 161,681 + MPMX19_06888 0.81 -0.5 161,681 + MPMX19_06888 0.81 +1.3 161,681 + MPMX19_06888 0.81 -0.1 161,682 - MPMX19_06888 0.81 -0.7 161,682 - MPMX19_06888 0.81 -0.5 161,682 - MPMX19_06888 0.81 +1.0 161,682 - MPMX19_06888 0.81 +1.7 161,682 - MPMX19_06888 0.81 +1.9 161,858 + -0.1 161,858 + -0.5 161,858 + -2.1 161,858 + -0.9 161,858 + -0.9 161,858 + -1.7 161,859 - -0.9 161,859 - +0.3 161,859 - +0.5 161,859 - -0.3 161,859 - +1.3 161,859 - -0.1 161,859 - -0.4 161,859 - -0.4 161,859 - -0.9 161,859 - -0.8 161,859 - -0.2 161,859 - +0.5 162,168 + +1.9 162,168 + -0.0 162,169 - +1.1 162,370 - MPMX19_06889 0.17 -0.2 162,370 - MPMX19_06889 0.17 -0.5 162,370 - MPMX19_06889 0.17 -0.7 162,370 - MPMX19_06889 0.17 +0.9 162,370 - MPMX19_06889 0.17 -1.6 162,370 - MPMX19_06889 0.17 -1.2 163,062 + MPMX19_06889 0.47 -1.4 163,062 + MPMX19_06889 0.47 -1.9 163,063 - MPMX19_06889 0.47 -1.5 163,063 - MPMX19_06889 0.47 -0.9 163,063 - MPMX19_06889 0.47 -1.4 163,443 + MPMX19_06889 0.64 +1.5 163,443 + MPMX19_06889 0.64 +0.7 163,444 - MPMX19_06889 0.64 +0.1 163,444 - MPMX19_06889 0.64 -0.2 163,845 + MPMX19_06889 0.81 -1.1 163,866 + MPMX19_06889 0.82 -0.0 163,941 + MPMX19_06889 0.86 -1.1 163,941 + MPMX19_06889 0.86 -3.1 163,941 + MPMX19_06889 0.86 -0.3 164,230 - -1.2 164,418 - MPMX19_06890 0.14 +1.0 164,418 - MPMX19_06890 0.14 +0.4 164,418 - MPMX19_06890 0.14 +1.1 164,418 - MPMX19_06890 0.14 -1.3 164,418 - MPMX19_06890 0.14 -1.1 164,577 - MPMX19_06890 0.29 -0.5 164,577 - MPMX19_06890 0.29 +0.3 164,577 - MPMX19_06890 0.29 -1.3 164,577 - MPMX19_06890 0.29 -0.5 164,577 - MPMX19_06890 0.29 -1.1 164,639 + MPMX19_06890 0.35 +0.3 164,639 + MPMX19_06890 0.35 -0.2 164,639 + MPMX19_06890 0.35 +1.8 164,639 + MPMX19_06890 0.35 -0.1 164,735 + MPMX19_06890 0.45 -0.1 164,904 - MPMX19_06890 0.61 +0.3 164,904 - MPMX19_06890 0.61 -0.2 164,904 - MPMX19_06890 0.61 -0.6 164,904 - MPMX19_06890 0.61 -1.4
Or see this region's nucleotide sequence