Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06884

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06882 and MPMX19_06883 overlap by 4 nucleotidesMPMX19_06883 and MPMX19_06884 are separated by 34 nucleotidesMPMX19_06884 and MPMX19_06885 are separated by 8 nucleotidesMPMX19_06885 and MPMX19_06886 overlap by 4 nucleotides MPMX19_06882: MPMX19_06882 - hypothetical protein, at 154,030 to 155,691 _06882 MPMX19_06883: MPMX19_06883 - Choline trimethylamine-lyase activating enzyme, at 155,688 to 156,029 _06883 MPMX19_06884: MPMX19_06884 - hypothetical protein, at 156,064 to 157,110 _06884 MPMX19_06885: MPMX19_06885 - Nitrate import ATP-binding protein NrtD, at 157,119 to 157,931 _06885 MPMX19_06886: MPMX19_06886 - Putative aliphatic sulfonates transport permease protein SsuC, at 157,928 to 158,818 _06886 Position (kb) 156 157 158Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 155.362 kb on + strand, within MPMX19_06882at 155.362 kb on + strand, within MPMX19_06882at 155.362 kb on + strand, within MPMX19_06882at 155.362 kb on + strand, within MPMX19_06882at 155.362 kb on + strand, within MPMX19_06882at 155.363 kb on - strand, within MPMX19_06882at 155.363 kb on - strand, within MPMX19_06882at 155.363 kb on - strand, within MPMX19_06882at 155.363 kb on - strand, within MPMX19_06882at 155.363 kb on - strand, within MPMX19_06882at 155.509 kb on + strand, within MPMX19_06882at 155.509 kb on + strand, within MPMX19_06882at 155.509 kb on + strand, within MPMX19_06882at 155.509 kb on + strand, within MPMX19_06882at 155.509 kb on + strand, within MPMX19_06882at 155.509 kb on + strand, within MPMX19_06882at 155.509 kb on + strand, within MPMX19_06882at 155.510 kb on - strand, within MPMX19_06882at 155.510 kb on - strand, within MPMX19_06882at 155.510 kb on - strand, within MPMX19_06882at 155.510 kb on - strand, within MPMX19_06882at 155.872 kb on - strand, within MPMX19_06883at 155.872 kb on - strand, within MPMX19_06883at 155.872 kb on - strand, within MPMX19_06883at 155.872 kb on - strand, within MPMX19_06883at 155.872 kb on - strand, within MPMX19_06883at 155.872 kb on - strand, within MPMX19_06883at 155.872 kb on - strand, within MPMX19_06883at 155.872 kb on - strand, within MPMX19_06883at 155.872 kb on - strand, within MPMX19_06883at 155.872 kb on - strand, within MPMX19_06883at 155.872 kb on - strand, within MPMX19_06883at 155.872 kb on - strand, within MPMX19_06883at 155.872 kb on - strand, within MPMX19_06883at 155.872 kb on - strand, within MPMX19_06883at 155.872 kb on - strand, within MPMX19_06883at 155.946 kb on + strand, within MPMX19_06883at 156.422 kb on - strand, within MPMX19_06884at 156.422 kb on - strand, within MPMX19_06884at 156.422 kb on - strand, within MPMX19_06884at 156.422 kb on - strand, within MPMX19_06884at 156.422 kb on - strand, within MPMX19_06884at 156.422 kb on - strand, within MPMX19_06884at 156.431 kb on - strand, within MPMX19_06884at 156.541 kb on + strand, within MPMX19_06884at 156.541 kb on + strand, within MPMX19_06884at 156.541 kb on + strand, within MPMX19_06884at 156.541 kb on + strand, within MPMX19_06884at 156.541 kb on + strand, within MPMX19_06884at 156.541 kb on + strand, within MPMX19_06884at 156.541 kb on + strand, within MPMX19_06884at 156.541 kb on + strand, within MPMX19_06884at 156.541 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.543 kb on + strand, within MPMX19_06884at 156.556 kb on + strand, within MPMX19_06884at 156.556 kb on + strand, within MPMX19_06884at 156.556 kb on + strand, within MPMX19_06884at 157.429 kb on + strand, within MPMX19_06885at 157.430 kb on - strand, within MPMX19_06885at 157.430 kb on - strand, within MPMX19_06885at 157.430 kb on - strand, within MPMX19_06885at 157.519 kb on - strand, within MPMX19_06885at 157.840 kb on - strand, within MPMX19_06885at 157.840 kb on - strand, within MPMX19_06885

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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155,362 + MPMX19_06882 0.80 +0.6
155,362 + MPMX19_06882 0.80 +0.5
155,362 + MPMX19_06882 0.80 -0.3
155,362 + MPMX19_06882 0.80 -0.5
155,362 + MPMX19_06882 0.80 -1.4
155,363 - MPMX19_06882 0.80 -1.8
155,363 - MPMX19_06882 0.80 -1.6
155,363 - MPMX19_06882 0.80 -0.9
155,363 - MPMX19_06882 0.80 +0.3
155,363 - MPMX19_06882 0.80 +0.2
155,509 + MPMX19_06882 0.89 +0.1
155,509 + MPMX19_06882 0.89 -1.1
155,509 + MPMX19_06882 0.89 +0.6
155,509 + MPMX19_06882 0.89 +1.3
155,509 + MPMX19_06882 0.89 -0.4
155,509 + MPMX19_06882 0.89 -0.3
155,509 + MPMX19_06882 0.89 -0.9
155,510 - MPMX19_06882 0.89 +0.4
155,510 - MPMX19_06882 0.89 -0.6
155,510 - MPMX19_06882 0.89 -0.5
155,510 - MPMX19_06882 0.89 -1.5
155,872 - MPMX19_06883 0.54 -1.2
155,872 - MPMX19_06883 0.54 +0.2
155,872 - MPMX19_06883 0.54 -0.6
155,872 - MPMX19_06883 0.54 -0.5
155,872 - MPMX19_06883 0.54 -1.0
155,872 - MPMX19_06883 0.54 -1.4
155,872 - MPMX19_06883 0.54 +1.2
155,872 - MPMX19_06883 0.54 +1.1
155,872 - MPMX19_06883 0.54 -1.6
155,872 - MPMX19_06883 0.54 -0.7
155,872 - MPMX19_06883 0.54 -0.2
155,872 - MPMX19_06883 0.54 -0.2
155,872 - MPMX19_06883 0.54 +1.7
155,872 - MPMX19_06883 0.54 -0.2
155,872 - MPMX19_06883 0.54 -1.2
155,946 + MPMX19_06883 0.75 -1.1
156,422 - MPMX19_06884 0.34 +0.3
156,422 - MPMX19_06884 0.34 -0.3
156,422 - MPMX19_06884 0.34 -0.7
156,422 - MPMX19_06884 0.34 -1.4
156,422 - MPMX19_06884 0.34 -1.6
156,422 - MPMX19_06884 0.34 +0.4
156,431 - MPMX19_06884 0.35 -1.2
156,541 + MPMX19_06884 0.46 -2.0
156,541 + MPMX19_06884 0.46 -0.6
156,541 + MPMX19_06884 0.46 +0.0
156,541 + MPMX19_06884 0.46 -1.2
156,541 + MPMX19_06884 0.46 +2.5
156,541 + MPMX19_06884 0.46 +1.5
156,541 + MPMX19_06884 0.46 -1.1
156,541 + MPMX19_06884 0.46 +2.1
156,541 + MPMX19_06884 0.46 -0.9
156,543 + MPMX19_06884 0.46 -1.1
156,543 + MPMX19_06884 0.46 -0.8
156,543 + MPMX19_06884 0.46 -0.2
156,543 + MPMX19_06884 0.46 -1.5
156,543 + MPMX19_06884 0.46 -0.4
156,543 + MPMX19_06884 0.46 -2.8
156,543 + MPMX19_06884 0.46 -0.2
156,543 + MPMX19_06884 0.46 -0.8
156,543 + MPMX19_06884 0.46 -0.1
156,543 + MPMX19_06884 0.46 -0.6
156,543 + MPMX19_06884 0.46 -0.4
156,543 + MPMX19_06884 0.46 -0.9
156,543 + MPMX19_06884 0.46 -0.9
156,543 + MPMX19_06884 0.46 -0.7
156,543 + MPMX19_06884 0.46 -0.4
156,543 + MPMX19_06884 0.46 -0.7
156,543 + MPMX19_06884 0.46 -0.2
156,543 + MPMX19_06884 0.46 -1.8
156,543 + MPMX19_06884 0.46 -0.6
156,543 + MPMX19_06884 0.46 -1.2
156,543 + MPMX19_06884 0.46 -0.9
156,543 + MPMX19_06884 0.46 -0.6
156,543 + MPMX19_06884 0.46 -1.8
156,543 + MPMX19_06884 0.46 -0.6
156,543 + MPMX19_06884 0.46 +0.6
156,543 + MPMX19_06884 0.46 +0.2
156,543 + MPMX19_06884 0.46 -1.3
156,543 + MPMX19_06884 0.46 +0.3
156,543 + MPMX19_06884 0.46 -0.4
156,543 + MPMX19_06884 0.46 +0.5
156,556 + MPMX19_06884 0.47 -0.9
156,556 + MPMX19_06884 0.47 -2.3
156,556 + MPMX19_06884 0.47 -0.6
157,429 + MPMX19_06885 0.38 -0.7
157,430 - MPMX19_06885 0.38 -0.4
157,430 - MPMX19_06885 0.38 -1.9
157,430 - MPMX19_06885 0.38 +0.6
157,519 - MPMX19_06885 0.49 +0.8
157,840 - MPMX19_06885 0.89 -1.1
157,840 - MPMX19_06885 0.89 +0.8

Or see this region's nucleotide sequence