Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06866

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06864 and MPMX19_06865 are separated by 132 nucleotidesMPMX19_06865 and MPMX19_06866 are separated by 239 nucleotidesMPMX19_06866 and MPMX19_06867 are separated by 121 nucleotides MPMX19_06864: MPMX19_06864 - hypothetical protein, at 134,114 to 134,458 _06864 MPMX19_06865: MPMX19_06865 - Leucine-responsive regulatory protein, at 134,591 to 135,091 _06865 MPMX19_06866: MPMX19_06866 - HTH-type transcriptional regulator NimR, at 135,331 to 136,209 _06866 MPMX19_06867: MPMX19_06867 - Sialic acid transporter NanT, at 136,331 to 137,689 _06867 Position (kb) 135 136 137Strain fitness (log2 ratio) -2 -1 0 1at 134.587 kb on + strandat 134.587 kb on + strandat 134.588 kb on - strandat 134.588 kb on - strandat 134.606 kb on + strandat 134.606 kb on + strandat 134.606 kb on + strandat 134.606 kb on + strandat 134.607 kb on - strandat 134.607 kb on - strandat 134.607 kb on - strandat 134.641 kb on + strand, within MPMX19_06865at 134.641 kb on + strand, within MPMX19_06865at 134.643 kb on + strand, within MPMX19_06865at 134.644 kb on - strand, within MPMX19_06865at 134.644 kb on - strand, within MPMX19_06865at 134.693 kb on + strand, within MPMX19_06865at 134.877 kb on + strand, within MPMX19_06865at 134.877 kb on + strand, within MPMX19_06865at 134.877 kb on + strand, within MPMX19_06865at 134.877 kb on + strand, within MPMX19_06865at 134.878 kb on - strand, within MPMX19_06865at 134.878 kb on - strand, within MPMX19_06865at 134.878 kb on - strand, within MPMX19_06865at 134.878 kb on - strand, within MPMX19_06865at 134.878 kb on - strand, within MPMX19_06865at 134.878 kb on - strand, within MPMX19_06865at 135.107 kb on + strandat 135.107 kb on + strandat 135.108 kb on - strandat 135.108 kb on - strandat 135.108 kb on - strandat 135.170 kb on + strandat 135.170 kb on + strandat 135.170 kb on + strandat 135.171 kb on - strandat 135.171 kb on - strandat 135.171 kb on - strandat 135.171 kb on - strandat 135.171 kb on - strandat 135.171 kb on - strandat 135.226 kb on + strandat 135.269 kb on + strandat 135.270 kb on - strandat 135.270 kb on - strandat 135.670 kb on + strand, within MPMX19_06866at 135.784 kb on + strand, within MPMX19_06866at 136.111 kb on + strand, within MPMX19_06866at 136.174 kb on + strandat 136.395 kb on + strandat 136.395 kb on + strandat 136.395 kb on + strandat 136.395 kb on + strandat 136.395 kb on + strandat 136.396 kb on - strandat 136.396 kb on - strandat 136.396 kb on - strandat 136.396 kb on - strandat 136.396 kb on - strandat 136.599 kb on + strand, within MPMX19_06867at 136.599 kb on + strand, within MPMX19_06867at 136.599 kb on + strand, within MPMX19_06867at 136.599 kb on + strand, within MPMX19_06867at 136.599 kb on + strand, within MPMX19_06867at 136.600 kb on - strand, within MPMX19_06867at 136.600 kb on - strand, within MPMX19_06867at 136.600 kb on - strand, within MPMX19_06867at 136.600 kb on - strand, within MPMX19_06867at 136.600 kb on - strand, within MPMX19_06867at 136.600 kb on - strand, within MPMX19_06867at 136.600 kb on - strand, within MPMX19_06867at 136.665 kb on + strand, within MPMX19_06867at 136.665 kb on + strand, within MPMX19_06867at 136.665 kb on + strand, within MPMX19_06867at 136.665 kb on + strand, within MPMX19_06867at 136.665 kb on + strand, within MPMX19_06867at 136.665 kb on + strand, within MPMX19_06867at 136.665 kb on + strand, within MPMX19_06867at 136.665 kb on + strand, within MPMX19_06867at 136.665 kb on + strand, within MPMX19_06867at 136.666 kb on - strand, within MPMX19_06867at 136.666 kb on - strand, within MPMX19_06867at 136.666 kb on - strand, within MPMX19_06867at 136.666 kb on - strand, within MPMX19_06867at 136.666 kb on - strand, within MPMX19_06867at 136.666 kb on - strand, within MPMX19_06867at 136.666 kb on - strand, within MPMX19_06867at 136.666 kb on - strand, within MPMX19_06867at 136.666 kb on - strand, within MPMX19_06867at 136.666 kb on - strand, within MPMX19_06867at 136.694 kb on + strand, within MPMX19_06867at 136.694 kb on + strand, within MPMX19_06867at 136.694 kb on + strand, within MPMX19_06867at 136.695 kb on - strand, within MPMX19_06867at 136.695 kb on - strand, within MPMX19_06867at 136.695 kb on - strand, within MPMX19_06867at 136.695 kb on - strand, within MPMX19_06867at 136.695 kb on - strand, within MPMX19_06867at 136.722 kb on + strand, within MPMX19_06867at 136.722 kb on + strand, within MPMX19_06867at 136.944 kb on + strand, within MPMX19_06867at 136.944 kb on + strand, within MPMX19_06867at 136.944 kb on + strand, within MPMX19_06867at 136.945 kb on - strand, within MPMX19_06867at 136.977 kb on + strand, within MPMX19_06867at 136.978 kb on + strand, within MPMX19_06867at 136.978 kb on + strand, within MPMX19_06867at 136.979 kb on - strand, within MPMX19_06867at 136.989 kb on + strand, within MPMX19_06867at 136.989 kb on + strand, within MPMX19_06867at 136.989 kb on + strand, within MPMX19_06867at 136.989 kb on + strand, within MPMX19_06867at 136.989 kb on + strand, within MPMX19_06867at 136.989 kb on + strand, within MPMX19_06867at 136.989 kb on + strand, within MPMX19_06867at 136.989 kb on + strand, within MPMX19_06867at 136.989 kb on + strand, within MPMX19_06867at 136.989 kb on + strand, within MPMX19_06867at 136.989 kb on + strand, within MPMX19_06867at 136.990 kb on - strand, within MPMX19_06867at 136.990 kb on - strand, within MPMX19_06867at 136.990 kb on - strand, within MPMX19_06867at 136.990 kb on - strand, within MPMX19_06867at 136.990 kb on - strand, within MPMX19_06867at 136.990 kb on - strand, within MPMX19_06867at 136.990 kb on - strand, within MPMX19_06867at 136.990 kb on - strand, within MPMX19_06867at 136.990 kb on - strand, within MPMX19_06867

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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134,587 + -0.5
134,587 + -1.6
134,588 - -1.3
134,588 - -0.4
134,606 + -1.5
134,606 + -2.3
134,606 + +0.5
134,606 + -0.3
134,607 - -0.9
134,607 - -1.0
134,607 - +1.3
134,641 + MPMX19_06865 0.10 +1.1
134,641 + MPMX19_06865 0.10 -1.8
134,643 + MPMX19_06865 0.10 +0.2
134,644 - MPMX19_06865 0.11 -0.9
134,644 - MPMX19_06865 0.11 -0.7
134,693 + MPMX19_06865 0.20 +0.3
134,877 + MPMX19_06865 0.57 -1.6
134,877 + MPMX19_06865 0.57 -0.7
134,877 + MPMX19_06865 0.57 +0.1
134,877 + MPMX19_06865 0.57 -0.7
134,878 - MPMX19_06865 0.57 -0.4
134,878 - MPMX19_06865 0.57 +0.7
134,878 - MPMX19_06865 0.57 +0.8
134,878 - MPMX19_06865 0.57 -0.5
134,878 - MPMX19_06865 0.57 -1.9
134,878 - MPMX19_06865 0.57 -0.6
135,107 + -1.1
135,107 + +0.3
135,108 - -0.9
135,108 - -0.1
135,108 - +0.8
135,170 + -0.1
135,170 + -1.8
135,170 + -1.2
135,171 - -0.7
135,171 - -1.7
135,171 - -1.7
135,171 - -0.2
135,171 - -0.2
135,171 - +0.3
135,226 + +0.7
135,269 + +0.7
135,270 - +1.1
135,270 - -0.7
135,670 + MPMX19_06866 0.39 -0.9
135,784 + MPMX19_06866 0.52 +0.4
136,111 + MPMX19_06866 0.89 -0.6
136,174 + +0.8
136,395 + +0.6
136,395 + -0.1
136,395 + -0.2
136,395 + -0.5
136,395 + -0.5
136,396 - -0.6
136,396 - -0.1
136,396 - -0.4
136,396 - -0.6
136,396 - -0.2
136,599 + MPMX19_06867 0.20 -0.7
136,599 + MPMX19_06867 0.20 -1.4
136,599 + MPMX19_06867 0.20 +1.3
136,599 + MPMX19_06867 0.20 +0.1
136,599 + MPMX19_06867 0.20 +0.9
136,600 - MPMX19_06867 0.20 -0.1
136,600 - MPMX19_06867 0.20 -0.6
136,600 - MPMX19_06867 0.20 +0.9
136,600 - MPMX19_06867 0.20 +1.3
136,600 - MPMX19_06867 0.20 +0.2
136,600 - MPMX19_06867 0.20 -0.4
136,600 - MPMX19_06867 0.20 -1.1
136,665 + MPMX19_06867 0.25 -1.7
136,665 + MPMX19_06867 0.25 +0.5
136,665 + MPMX19_06867 0.25 -1.2
136,665 + MPMX19_06867 0.25 -1.7
136,665 + MPMX19_06867 0.25 -0.7
136,665 + MPMX19_06867 0.25 -0.9
136,665 + MPMX19_06867 0.25 -0.0
136,665 + MPMX19_06867 0.25 -1.2
136,665 + MPMX19_06867 0.25 -0.1
136,666 - MPMX19_06867 0.25 +0.1
136,666 - MPMX19_06867 0.25 +0.1
136,666 - MPMX19_06867 0.25 -0.1
136,666 - MPMX19_06867 0.25 -0.8
136,666 - MPMX19_06867 0.25 -1.0
136,666 - MPMX19_06867 0.25 +0.6
136,666 - MPMX19_06867 0.25 -1.5
136,666 - MPMX19_06867 0.25 +1.3
136,666 - MPMX19_06867 0.25 -1.6
136,666 - MPMX19_06867 0.25 -0.5
136,694 + MPMX19_06867 0.27 +0.8
136,694 + MPMX19_06867 0.27 -0.4
136,694 + MPMX19_06867 0.27 -1.1
136,695 - MPMX19_06867 0.27 -0.0
136,695 - MPMX19_06867 0.27 -0.9
136,695 - MPMX19_06867 0.27 -0.5
136,695 - MPMX19_06867 0.27 -0.1
136,695 - MPMX19_06867 0.27 +0.7
136,722 + MPMX19_06867 0.29 +0.9
136,722 + MPMX19_06867 0.29 -0.5
136,944 + MPMX19_06867 0.45 -1.7
136,944 + MPMX19_06867 0.45 -1.7
136,944 + MPMX19_06867 0.45 -2.2
136,945 - MPMX19_06867 0.45 +0.4
136,977 + MPMX19_06867 0.48 +0.1
136,978 + MPMX19_06867 0.48 -0.8
136,978 + MPMX19_06867 0.48 -0.1
136,979 - MPMX19_06867 0.48 -2.2
136,989 + MPMX19_06867 0.48 +0.1
136,989 + MPMX19_06867 0.48 +0.1
136,989 + MPMX19_06867 0.48 +0.1
136,989 + MPMX19_06867 0.48 +1.7
136,989 + MPMX19_06867 0.48 -0.9
136,989 + MPMX19_06867 0.48 -0.7
136,989 + MPMX19_06867 0.48 +1.1
136,989 + MPMX19_06867 0.48 +0.5
136,989 + MPMX19_06867 0.48 +0.3
136,989 + MPMX19_06867 0.48 +0.4
136,989 + MPMX19_06867 0.48 -1.1
136,990 - MPMX19_06867 0.48 +0.9
136,990 - MPMX19_06867 0.48 -0.7
136,990 - MPMX19_06867 0.48 -0.3
136,990 - MPMX19_06867 0.48 -0.9
136,990 - MPMX19_06867 0.48 -1.6
136,990 - MPMX19_06867 0.48 +0.2
136,990 - MPMX19_06867 0.48 +0.7
136,990 - MPMX19_06867 0.48 -2.6
136,990 - MPMX19_06867 0.48 -1.9

Or see this region's nucleotide sequence