Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06853

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06851 and MPMX19_06852 are separated by 10 nucleotidesMPMX19_06852 and MPMX19_06853 are separated by 57 nucleotidesMPMX19_06853 and MPMX19_06854 are separated by 49 nucleotides MPMX19_06851: MPMX19_06851 - NADP/NAD-dependent aldehyde dehydrogenase PuuC, at 119,424 to 120,896 _06851 MPMX19_06852: MPMX19_06852 - hypothetical protein, at 120,907 to 121,278 _06852 MPMX19_06853: MPMX19_06853 - Glyoxylate/hydroxypyruvate reductase A, at 121,336 to 122,259 _06853 MPMX19_06854: MPMX19_06854 - Acetylornithine deacetylase, at 122,309 to 123,433 _06854 Position (kb) 121 122 123Strain fitness (log2 ratio) -3 -2 -1 0 1at 120.769 kb on + strandat 120.769 kb on + strandat 120.769 kb on + strandat 120.770 kb on - strandat 120.923 kb on + strandat 120.923 kb on + strandat 120.923 kb on + strandat 120.923 kb on + strandat 120.923 kb on + strandat 120.923 kb on + strandat 120.924 kb on - strandat 120.924 kb on - strandat 120.924 kb on - strandat 120.924 kb on - strandat 121.440 kb on + strand, within MPMX19_06853at 121.440 kb on + strand, within MPMX19_06853at 121.440 kb on + strand, within MPMX19_06853at 121.440 kb on + strand, within MPMX19_06853at 121.440 kb on + strand, within MPMX19_06853at 121.441 kb on - strand, within MPMX19_06853at 121.441 kb on - strand, within MPMX19_06853at 121.970 kb on + strand, within MPMX19_06853at 121.970 kb on + strand, within MPMX19_06853at 121.971 kb on - strand, within MPMX19_06853at 121.971 kb on - strand, within MPMX19_06853at 121.971 kb on - strand, within MPMX19_06853at 122.135 kb on + strand, within MPMX19_06853at 122.472 kb on + strand, within MPMX19_06854at 122.472 kb on + strand, within MPMX19_06854at 122.472 kb on + strand, within MPMX19_06854at 122.472 kb on + strand, within MPMX19_06854at 122.473 kb on - strand, within MPMX19_06854at 122.473 kb on - strand, within MPMX19_06854at 122.559 kb on + strand, within MPMX19_06854at 122.559 kb on + strand, within MPMX19_06854at 122.751 kb on + strand, within MPMX19_06854at 122.751 kb on + strand, within MPMX19_06854at 122.752 kb on - strand, within MPMX19_06854at 123.042 kb on + strand, within MPMX19_06854at 123.043 kb on - strand, within MPMX19_06854at 123.243 kb on + strand, within MPMX19_06854at 123.243 kb on + strand, within MPMX19_06854at 123.244 kb on - strand, within MPMX19_06854at 123.244 kb on - strand, within MPMX19_06854at 123.244 kb on - strand, within MPMX19_06854at 123.244 kb on - strand, within MPMX19_06854

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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120,769 + -0.6
120,769 + +0.5
120,769 + -0.2
120,770 - -3.2
120,923 + +0.2
120,923 + -0.2
120,923 + -0.2
120,923 + -1.5
120,923 + -0.3
120,923 + -0.4
120,924 - +0.1
120,924 - -0.0
120,924 - +0.2
120,924 - -0.7
121,440 + MPMX19_06853 0.11 -0.7
121,440 + MPMX19_06853 0.11 -0.5
121,440 + MPMX19_06853 0.11 -1.1
121,440 + MPMX19_06853 0.11 -1.7
121,440 + MPMX19_06853 0.11 -0.7
121,441 - MPMX19_06853 0.11 -0.9
121,441 - MPMX19_06853 0.11 -0.8
121,970 + MPMX19_06853 0.69 -1.8
121,970 + MPMX19_06853 0.69 +0.5
121,971 - MPMX19_06853 0.69 -0.7
121,971 - MPMX19_06853 0.69 -0.6
121,971 - MPMX19_06853 0.69 -0.5
122,135 + MPMX19_06853 0.86 +0.3
122,472 + MPMX19_06854 0.14 +0.0
122,472 + MPMX19_06854 0.14 -2.1
122,472 + MPMX19_06854 0.14 -0.2
122,472 + MPMX19_06854 0.14 -2.6
122,473 - MPMX19_06854 0.15 -0.4
122,473 - MPMX19_06854 0.15 +0.5
122,559 + MPMX19_06854 0.22 -1.2
122,559 + MPMX19_06854 0.22 -0.4
122,751 + MPMX19_06854 0.39 +0.1
122,751 + MPMX19_06854 0.39 +0.3
122,752 - MPMX19_06854 0.39 +0.1
123,042 + MPMX19_06854 0.65 -0.1
123,043 - MPMX19_06854 0.65 -0.1
123,243 + MPMX19_06854 0.83 -0.6
123,243 + MPMX19_06854 0.83 +1.1
123,244 - MPMX19_06854 0.83 +0.3
123,244 - MPMX19_06854 0.83 +0.1
123,244 - MPMX19_06854 0.83 -0.8
123,244 - MPMX19_06854 0.83 -1.3

Or see this region's nucleotide sequence