Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06851 and MPMX19_06852 are separated by 10 nucleotides MPMX19_06852 and MPMX19_06853 are separated by 57 nucleotides MPMX19_06853 and MPMX19_06854 are separated by 49 nucleotides
MPMX19_06851: MPMX19_06851 - NADP/NAD-dependent aldehyde dehydrogenase PuuC, at 119,424 to 120,896
_06851
MPMX19_06852: MPMX19_06852 - hypothetical protein, at 120,907 to 121,278
_06852
MPMX19_06853: MPMX19_06853 - Glyoxylate/hydroxypyruvate reductase A, at 121,336 to 122,259
_06853
MPMX19_06854: MPMX19_06854 - Acetylornithine deacetylase, at 122,309 to 123,433
_06854
Position (kb)
121
122
123 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 120.769 kb on + strand at 120.769 kb on + strand at 120.769 kb on + strand at 120.770 kb on - strand at 120.923 kb on + strand at 120.923 kb on + strand at 120.923 kb on + strand at 120.923 kb on + strand at 120.923 kb on + strand at 120.923 kb on + strand at 120.924 kb on - strand at 120.924 kb on - strand at 120.924 kb on - strand at 120.924 kb on - strand at 121.440 kb on + strand, within MPMX19_06853 at 121.440 kb on + strand, within MPMX19_06853 at 121.440 kb on + strand, within MPMX19_06853 at 121.440 kb on + strand, within MPMX19_06853 at 121.440 kb on + strand, within MPMX19_06853 at 121.441 kb on - strand, within MPMX19_06853 at 121.441 kb on - strand, within MPMX19_06853 at 121.970 kb on + strand, within MPMX19_06853 at 121.970 kb on + strand, within MPMX19_06853 at 121.971 kb on - strand, within MPMX19_06853 at 121.971 kb on - strand, within MPMX19_06853 at 121.971 kb on - strand, within MPMX19_06853 at 122.135 kb on + strand, within MPMX19_06853 at 122.472 kb on + strand, within MPMX19_06854 at 122.472 kb on + strand, within MPMX19_06854 at 122.472 kb on + strand, within MPMX19_06854 at 122.472 kb on + strand, within MPMX19_06854 at 122.473 kb on - strand, within MPMX19_06854 at 122.473 kb on - strand, within MPMX19_06854 at 122.559 kb on + strand, within MPMX19_06854 at 122.559 kb on + strand, within MPMX19_06854 at 122.751 kb on + strand, within MPMX19_06854 at 122.751 kb on + strand, within MPMX19_06854 at 122.752 kb on - strand, within MPMX19_06854 at 123.042 kb on + strand, within MPMX19_06854 at 123.043 kb on - strand, within MPMX19_06854 at 123.243 kb on + strand, within MPMX19_06854 at 123.243 kb on + strand, within MPMX19_06854 at 123.244 kb on - strand, within MPMX19_06854 at 123.244 kb on - strand, within MPMX19_06854 at 123.244 kb on - strand, within MPMX19_06854 at 123.244 kb on - strand, within MPMX19_06854
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 120,769 + -0.6 120,769 + +0.5 120,769 + -0.2 120,770 - -3.2 120,923 + +0.2 120,923 + -0.2 120,923 + -0.2 120,923 + -1.5 120,923 + -0.3 120,923 + -0.4 120,924 - +0.1 120,924 - -0.0 120,924 - +0.2 120,924 - -0.7 121,440 + MPMX19_06853 0.11 -0.7 121,440 + MPMX19_06853 0.11 -0.5 121,440 + MPMX19_06853 0.11 -1.1 121,440 + MPMX19_06853 0.11 -1.7 121,440 + MPMX19_06853 0.11 -0.7 121,441 - MPMX19_06853 0.11 -0.9 121,441 - MPMX19_06853 0.11 -0.8 121,970 + MPMX19_06853 0.69 -1.8 121,970 + MPMX19_06853 0.69 +0.5 121,971 - MPMX19_06853 0.69 -0.7 121,971 - MPMX19_06853 0.69 -0.6 121,971 - MPMX19_06853 0.69 -0.5 122,135 + MPMX19_06853 0.86 +0.3 122,472 + MPMX19_06854 0.14 +0.0 122,472 + MPMX19_06854 0.14 -2.1 122,472 + MPMX19_06854 0.14 -0.2 122,472 + MPMX19_06854 0.14 -2.6 122,473 - MPMX19_06854 0.15 -0.4 122,473 - MPMX19_06854 0.15 +0.5 122,559 + MPMX19_06854 0.22 -1.2 122,559 + MPMX19_06854 0.22 -0.4 122,751 + MPMX19_06854 0.39 +0.1 122,751 + MPMX19_06854 0.39 +0.3 122,752 - MPMX19_06854 0.39 +0.1 123,042 + MPMX19_06854 0.65 -0.1 123,043 - MPMX19_06854 0.65 -0.1 123,243 + MPMX19_06854 0.83 -0.6 123,243 + MPMX19_06854 0.83 +1.1 123,244 - MPMX19_06854 0.83 +0.3 123,244 - MPMX19_06854 0.83 +0.1 123,244 - MPMX19_06854 0.83 -0.8 123,244 - MPMX19_06854 0.83 -1.3
Or see this region's nucleotide sequence