Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06833

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06831 and MPMX19_06832 are separated by 112 nucleotidesMPMX19_06832 and MPMX19_06833 are separated by 74 nucleotidesMPMX19_06833 and MPMX19_06834 are separated by 122 nucleotides MPMX19_06831: MPMX19_06831 - putative amino-acid permease protein YxeN, at 96,651 to 97,307 _06831 MPMX19_06832: MPMX19_06832 - L-cystine transport system permease protein YecS, at 97,420 to 98,079 _06832 MPMX19_06833: MPMX19_06833 - Glutamine transport ATP-binding protein GlnQ, at 98,154 to 98,939 _06833 MPMX19_06834: MPMX19_06834 - Vitamin B6 salvage pathway transcriptional repressor PtsJ, at 99,062 to 100,447 _06834 Position (kb) 98 99Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 97.320 kb on + strandat 97.320 kb on + strandat 97.321 kb on - strandat 97.381 kb on + strandat 97.381 kb on + strandat 97.382 kb on - strandat 97.403 kb on + strandat 97.404 kb on - strandat 97.404 kb on - strandat 97.404 kb on - strandat 97.404 kb on - strandat 97.422 kb on - strandat 97.422 kb on - strandat 97.497 kb on - strand, within MPMX19_06832at 97.497 kb on - strand, within MPMX19_06832at 97.497 kb on - strand, within MPMX19_06832at 97.505 kb on + strand, within MPMX19_06832at 97.505 kb on + strand, within MPMX19_06832at 97.505 kb on + strand, within MPMX19_06832at 97.505 kb on + strand, within MPMX19_06832at 97.505 kb on + strand, within MPMX19_06832at 97.505 kb on + strand, within MPMX19_06832at 97.506 kb on - strand, within MPMX19_06832at 97.506 kb on - strand, within MPMX19_06832at 97.506 kb on - strand, within MPMX19_06832at 97.506 kb on - strand, within MPMX19_06832at 97.506 kb on - strand, within MPMX19_06832at 97.506 kb on - strand, within MPMX19_06832at 97.506 kb on - strand, within MPMX19_06832at 97.788 kb on - strand, within MPMX19_06832at 97.788 kb on - strand, within MPMX19_06832at 97.868 kb on + strand, within MPMX19_06832at 97.868 kb on + strand, within MPMX19_06832at 97.868 kb on + strand, within MPMX19_06832at 97.869 kb on - strand, within MPMX19_06832at 97.869 kb on - strand, within MPMX19_06832at 97.869 kb on - strand, within MPMX19_06832at 97.869 kb on - strand, within MPMX19_06832at 97.919 kb on + strand, within MPMX19_06832at 97.920 kb on - strand, within MPMX19_06832at 97.920 kb on - strand, within MPMX19_06832at 97.920 kb on - strand, within MPMX19_06832at 98.061 kb on - strandat 99.048 kb on + strandat 99.049 kb on - strandat 99.516 kb on + strand, within MPMX19_06834at 99.516 kb on + strand, within MPMX19_06834at 99.564 kb on + strand, within MPMX19_06834at 99.564 kb on + strand, within MPMX19_06834at 99.564 kb on + strand, within MPMX19_06834at 99.565 kb on - strand, within MPMX19_06834at 99.565 kb on - strand, within MPMX19_06834at 99.565 kb on - strand, within MPMX19_06834at 99.565 kb on - strand, within MPMX19_06834at 99.565 kb on - strand, within MPMX19_06834at 99.565 kb on - strand, within MPMX19_06834at 99.565 kb on - strand, within MPMX19_06834at 99.840 kb on + strand, within MPMX19_06834at 99.841 kb on - strand, within MPMX19_06834at 99.841 kb on - strand, within MPMX19_06834at 99.841 kb on - strand, within MPMX19_06834at 99.841 kb on - strand, within MPMX19_06834at 99.862 kb on + strand, within MPMX19_06834at 99.862 kb on + strand, within MPMX19_06834at 99.862 kb on + strand, within MPMX19_06834at 99.862 kb on + strand, within MPMX19_06834at 99.862 kb on + strand, within MPMX19_06834at 99.863 kb on - strand, within MPMX19_06834at 99.863 kb on - strand, within MPMX19_06834at 99.863 kb on - strand, within MPMX19_06834at 99.863 kb on - strand, within MPMX19_06834

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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97,320 + -1.2
97,320 + -0.1
97,321 - -0.7
97,381 + +2.4
97,381 + +0.2
97,382 - -0.2
97,403 + +0.6
97,404 - +0.3
97,404 - +0.5
97,404 - +0.7
97,404 - +0.3
97,422 - +0.2
97,422 - +0.8
97,497 - MPMX19_06832 0.12 -0.5
97,497 - MPMX19_06832 0.12 -0.7
97,497 - MPMX19_06832 0.12 -0.4
97,505 + MPMX19_06832 0.13 -1.8
97,505 + MPMX19_06832 0.13 +0.0
97,505 + MPMX19_06832 0.13 -0.8
97,505 + MPMX19_06832 0.13 -0.2
97,505 + MPMX19_06832 0.13 -0.1
97,505 + MPMX19_06832 0.13 -1.1
97,506 - MPMX19_06832 0.13 -0.2
97,506 - MPMX19_06832 0.13 -0.3
97,506 - MPMX19_06832 0.13 -1.1
97,506 - MPMX19_06832 0.13 -1.0
97,506 - MPMX19_06832 0.13 -1.7
97,506 - MPMX19_06832 0.13 -1.4
97,506 - MPMX19_06832 0.13 -2.2
97,788 - MPMX19_06832 0.56 -0.2
97,788 - MPMX19_06832 0.56 -0.5
97,868 + MPMX19_06832 0.68 -0.9
97,868 + MPMX19_06832 0.68 -0.9
97,868 + MPMX19_06832 0.68 -1.5
97,869 - MPMX19_06832 0.68 +0.5
97,869 - MPMX19_06832 0.68 -0.9
97,869 - MPMX19_06832 0.68 -0.1
97,869 - MPMX19_06832 0.68 -1.1
97,919 + MPMX19_06832 0.76 -1.1
97,920 - MPMX19_06832 0.76 -0.8
97,920 - MPMX19_06832 0.76 -1.5
97,920 - MPMX19_06832 0.76 -1.7
98,061 - +0.4
99,048 + -1.4
99,049 - -0.9
99,516 + MPMX19_06834 0.33 -0.1
99,516 + MPMX19_06834 0.33 -2.9
99,564 + MPMX19_06834 0.36 +0.5
99,564 + MPMX19_06834 0.36 +1.3
99,564 + MPMX19_06834 0.36 -1.3
99,565 - MPMX19_06834 0.36 -0.8
99,565 - MPMX19_06834 0.36 -0.7
99,565 - MPMX19_06834 0.36 -0.6
99,565 - MPMX19_06834 0.36 -2.3
99,565 - MPMX19_06834 0.36 -0.7
99,565 - MPMX19_06834 0.36 -1.4
99,565 - MPMX19_06834 0.36 +0.2
99,840 + MPMX19_06834 0.56 -1.6
99,841 - MPMX19_06834 0.56 -1.5
99,841 - MPMX19_06834 0.56 -0.3
99,841 - MPMX19_06834 0.56 +1.3
99,841 - MPMX19_06834 0.56 +0.3
99,862 + MPMX19_06834 0.58 +0.9
99,862 + MPMX19_06834 0.58 +0.6
99,862 + MPMX19_06834 0.58 -0.3
99,862 + MPMX19_06834 0.58 +0.6
99,862 + MPMX19_06834 0.58 +0.2
99,863 - MPMX19_06834 0.58 +1.1
99,863 - MPMX19_06834 0.58 -0.2
99,863 - MPMX19_06834 0.58 -0.1
99,863 - MPMX19_06834 0.58 -1.1

Or see this region's nucleotide sequence