Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06816

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06814 and MPMX19_06815 are separated by 62 nucleotidesMPMX19_06815 and MPMX19_06816 are separated by 98 nucleotidesMPMX19_06816 and MPMX19_06817 are separated by 67 nucleotides MPMX19_06814: MPMX19_06814 - Glyoxylate/hydroxypyruvate reductase A, at 79,955 to 80,902 _06814 MPMX19_06815: MPMX19_06815 - hypothetical protein, at 80,965 to 81,561 _06815 MPMX19_06816: MPMX19_06816 - Glycine betaine-binding periplasmic protein OusX, at 81,660 to 82,697 _06816 MPMX19_06817: MPMX19_06817 - Glycine betaine/choline transport system permease protein OusW, at 82,765 to 83,727 _06817 Position (kb) 81 82 83Strain fitness (log2 ratio) -2 -1 0 1 2at 80.908 kb on + strandat 80.908 kb on + strandat 80.908 kb on + strandat 80.908 kb on + strandat 80.910 kb on + strandat 80.910 kb on + strandat 80.911 kb on - strandat 80.911 kb on - strandat 80.911 kb on - strandat 80.911 kb on - strandat 81.320 kb on + strand, within MPMX19_06815at 81.320 kb on + strand, within MPMX19_06815at 81.320 kb on + strand, within MPMX19_06815at 81.321 kb on - strand, within MPMX19_06815at 81.321 kb on - strand, within MPMX19_06815at 81.321 kb on - strand, within MPMX19_06815at 81.321 kb on - strand, within MPMX19_06815at 82.063 kb on + strand, within MPMX19_06816at 82.063 kb on + strand, within MPMX19_06816at 82.064 kb on - strand, within MPMX19_06816at 82.123 kb on + strand, within MPMX19_06816at 82.123 kb on + strand, within MPMX19_06816at 82.123 kb on + strand, within MPMX19_06816at 82.123 kb on + strand, within MPMX19_06816at 82.123 kb on + strand, within MPMX19_06816at 82.123 kb on + strand, within MPMX19_06816at 82.124 kb on - strand, within MPMX19_06816at 82.124 kb on - strand, within MPMX19_06816at 82.124 kb on - strand, within MPMX19_06816at 82.505 kb on - strand, within MPMX19_06816at 82.549 kb on + strand, within MPMX19_06816at 82.549 kb on + strand, within MPMX19_06816at 82.549 kb on + strand, within MPMX19_06816at 82.549 kb on + strand, within MPMX19_06816at 82.549 kb on + strand, within MPMX19_06816at 82.549 kb on + strand, within MPMX19_06816at 82.549 kb on + strand, within MPMX19_06816at 82.549 kb on + strand, within MPMX19_06816at 82.549 kb on + strand, within MPMX19_06816at 82.549 kb on + strand, within MPMX19_06816at 82.549 kb on + strand, within MPMX19_06816at 82.549 kb on + strand, within MPMX19_06816at 82.549 kb on + strand, within MPMX19_06816at 82.550 kb on - strand, within MPMX19_06816at 82.550 kb on - strand, within MPMX19_06816at 82.550 kb on - strand, within MPMX19_06816at 82.550 kb on - strand, within MPMX19_06816at 82.550 kb on - strand, within MPMX19_06816at 82.550 kb on - strand, within MPMX19_06816at 82.550 kb on - strand, within MPMX19_06816at 82.579 kb on + strand, within MPMX19_06816at 82.579 kb on + strand, within MPMX19_06816at 82.580 kb on - strand, within MPMX19_06816at 82.580 kb on - strand, within MPMX19_06816at 82.580 kb on - strand, within MPMX19_06816at 82.580 kb on - strand, within MPMX19_06816at 83.300 kb on + strand, within MPMX19_06817at 83.300 kb on + strand, within MPMX19_06817at 83.301 kb on - strand, within MPMX19_06817at 83.609 kb on + strand, within MPMX19_06817at 83.609 kb on + strand, within MPMX19_06817at 83.610 kb on - strand, within MPMX19_06817at 83.610 kb on - strand, within MPMX19_06817at 83.610 kb on - strand, within MPMX19_06817at 83.610 kb on - strand, within MPMX19_06817at 83.610 kb on - strand, within MPMX19_06817

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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80,908 + -1.1
80,908 + +0.3
80,908 + -0.5
80,908 + -2.2
80,910 + -2.4
80,910 + -1.5
80,911 - -0.2
80,911 - -0.1
80,911 - -0.6
80,911 - +1.0
81,320 + MPMX19_06815 0.59 -0.0
81,320 + MPMX19_06815 0.59 -0.4
81,320 + MPMX19_06815 0.59 -0.7
81,321 - MPMX19_06815 0.60 -0.7
81,321 - MPMX19_06815 0.60 -0.2
81,321 - MPMX19_06815 0.60 +0.1
81,321 - MPMX19_06815 0.60 -0.3
82,063 + MPMX19_06816 0.39 -0.7
82,063 + MPMX19_06816 0.39 +2.1
82,064 - MPMX19_06816 0.39 -0.6
82,123 + MPMX19_06816 0.45 -0.7
82,123 + MPMX19_06816 0.45 -0.7
82,123 + MPMX19_06816 0.45 -0.0
82,123 + MPMX19_06816 0.45 -1.5
82,123 + MPMX19_06816 0.45 +0.9
82,123 + MPMX19_06816 0.45 -1.9
82,124 - MPMX19_06816 0.45 -0.0
82,124 - MPMX19_06816 0.45 -1.2
82,124 - MPMX19_06816 0.45 +0.5
82,505 - MPMX19_06816 0.81 +0.4
82,549 + MPMX19_06816 0.86 +1.8
82,549 + MPMX19_06816 0.86 +0.4
82,549 + MPMX19_06816 0.86 +0.5
82,549 + MPMX19_06816 0.86 -0.4
82,549 + MPMX19_06816 0.86 -0.2
82,549 + MPMX19_06816 0.86 +0.9
82,549 + MPMX19_06816 0.86 -0.4
82,549 + MPMX19_06816 0.86 -1.5
82,549 + MPMX19_06816 0.86 -0.2
82,549 + MPMX19_06816 0.86 -0.6
82,549 + MPMX19_06816 0.86 +0.5
82,549 + MPMX19_06816 0.86 -0.7
82,549 + MPMX19_06816 0.86 -0.4
82,550 - MPMX19_06816 0.86 -0.7
82,550 - MPMX19_06816 0.86 -0.5
82,550 - MPMX19_06816 0.86 +1.0
82,550 - MPMX19_06816 0.86 +0.0
82,550 - MPMX19_06816 0.86 -0.7
82,550 - MPMX19_06816 0.86 -1.7
82,550 - MPMX19_06816 0.86 -0.1
82,579 + MPMX19_06816 0.89 -0.5
82,579 + MPMX19_06816 0.89 +0.3
82,580 - MPMX19_06816 0.89 -0.1
82,580 - MPMX19_06816 0.89 +0.9
82,580 - MPMX19_06816 0.89 -1.1
82,580 - MPMX19_06816 0.89 -0.7
83,300 + MPMX19_06817 0.56 -0.6
83,300 + MPMX19_06817 0.56 +0.2
83,301 - MPMX19_06817 0.56 -0.7
83,609 + MPMX19_06817 0.88 -0.9
83,609 + MPMX19_06817 0.88 -0.2
83,610 - MPMX19_06817 0.88 -1.1
83,610 - MPMX19_06817 0.88 -0.0
83,610 - MPMX19_06817 0.88 -1.6
83,610 - MPMX19_06817 0.88 -2.1
83,610 - MPMX19_06817 0.88 -0.8

Or see this region's nucleotide sequence