Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06785

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06784 and MPMX19_06785 are separated by 57 nucleotidesMPMX19_06785 and MPMX19_06786 are separated by 720 nucleotides MPMX19_06784: MPMX19_06784 - D-galactonate dehydratase, at 47,574 to 48,773 _06784 MPMX19_06785: MPMX19_06785 - L-idonate 5-dehydrogenase (NAD(P)(+)), at 48,831 to 49,868 _06785 MPMX19_06786: MPMX19_06786 - Formate dehydrogenase, mitochondrial, at 50,589 to 51,629 _06786 Position (kb) 48 49 50Strain fitness (log2 ratio) -2 -1 0 1 2at 47.836 kb on + strand, within MPMX19_06784at 47.836 kb on + strand, within MPMX19_06784at 47.836 kb on + strand, within MPMX19_06784at 47.836 kb on + strand, within MPMX19_06784at 47.836 kb on + strand, within MPMX19_06784at 47.836 kb on + strand, within MPMX19_06784at 47.836 kb on + strand, within MPMX19_06784at 47.836 kb on + strand, within MPMX19_06784at 47.836 kb on + strand, within MPMX19_06784at 47.836 kb on + strand, within MPMX19_06784at 47.836 kb on + strand, within MPMX19_06784at 47.837 kb on - strand, within MPMX19_06784at 47.837 kb on - strand, within MPMX19_06784at 47.837 kb on - strand, within MPMX19_06784at 47.837 kb on - strand, within MPMX19_06784at 47.837 kb on - strand, within MPMX19_06784at 47.837 kb on - strand, within MPMX19_06784at 47.837 kb on - strand, within MPMX19_06784at 47.837 kb on - strand, within MPMX19_06784at 47.837 kb on - strand, within MPMX19_06784at 47.942 kb on - strand, within MPMX19_06784at 48.046 kb on + strand, within MPMX19_06784at 48.046 kb on + strand, within MPMX19_06784at 48.046 kb on + strand, within MPMX19_06784at 48.047 kb on - strand, within MPMX19_06784at 48.061 kb on + strand, within MPMX19_06784at 48.061 kb on + strand, within MPMX19_06784at 48.061 kb on + strand, within MPMX19_06784at 48.061 kb on + strand, within MPMX19_06784at 48.061 kb on + strand, within MPMX19_06784at 48.061 kb on + strand, within MPMX19_06784at 48.062 kb on - strand, within MPMX19_06784at 48.062 kb on - strand, within MPMX19_06784at 48.331 kb on + strand, within MPMX19_06784at 48.394 kb on + strand, within MPMX19_06784at 48.395 kb on - strand, within MPMX19_06784at 48.395 kb on - strand, within MPMX19_06784at 48.418 kb on + strand, within MPMX19_06784at 48.418 kb on + strand, within MPMX19_06784at 48.418 kb on + strand, within MPMX19_06784at 48.418 kb on + strand, within MPMX19_06784at 48.418 kb on + strand, within MPMX19_06784at 48.419 kb on - strand, within MPMX19_06784at 48.419 kb on - strand, within MPMX19_06784at 48.530 kb on - strand, within MPMX19_06784at 48.667 kb on + strandat 48.667 kb on + strandat 48.667 kb on + strandat 48.668 kb on - strandat 49.741 kb on + strand, within MPMX19_06785at 49.741 kb on + strand, within MPMX19_06785at 49.742 kb on - strand, within MPMX19_06785at 49.742 kb on - strand, within MPMX19_06785at 49.742 kb on - strand, within MPMX19_06785at 49.742 kb on - strand, within MPMX19_06785at 49.742 kb on - strand, within MPMX19_06785at 49.834 kb on - strandat 50.115 kb on + strandat 50.116 kb on - strandat 50.116 kb on - strandat 50.116 kb on - strandat 50.116 kb on - strandat 50.116 kb on - strandat 50.170 kb on - strandat 50.598 kb on - strandat 50.598 kb on - strandat 50.598 kb on - strandat 50.598 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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47,836 + MPMX19_06784 0.22 +1.7
47,836 + MPMX19_06784 0.22 -0.2
47,836 + MPMX19_06784 0.22 -0.0
47,836 + MPMX19_06784 0.22 -1.6
47,836 + MPMX19_06784 0.22 -2.2
47,836 + MPMX19_06784 0.22 -1.6
47,836 + MPMX19_06784 0.22 -1.0
47,836 + MPMX19_06784 0.22 -1.1
47,836 + MPMX19_06784 0.22 -0.2
47,836 + MPMX19_06784 0.22 -0.2
47,836 + MPMX19_06784 0.22 -0.4
47,837 - MPMX19_06784 0.22 +0.1
47,837 - MPMX19_06784 0.22 +0.9
47,837 - MPMX19_06784 0.22 -0.3
47,837 - MPMX19_06784 0.22 -1.3
47,837 - MPMX19_06784 0.22 -0.4
47,837 - MPMX19_06784 0.22 -0.6
47,837 - MPMX19_06784 0.22 +0.9
47,837 - MPMX19_06784 0.22 -0.9
47,837 - MPMX19_06784 0.22 -0.8
47,942 - MPMX19_06784 0.31 -1.4
48,046 + MPMX19_06784 0.39 +1.1
48,046 + MPMX19_06784 0.39 +1.1
48,046 + MPMX19_06784 0.39 +0.1
48,047 - MPMX19_06784 0.39 -2.1
48,061 + MPMX19_06784 0.41 -0.6
48,061 + MPMX19_06784 0.41 +0.3
48,061 + MPMX19_06784 0.41 -0.5
48,061 + MPMX19_06784 0.41 -1.4
48,061 + MPMX19_06784 0.41 +0.0
48,061 + MPMX19_06784 0.41 -0.7
48,062 - MPMX19_06784 0.41 -0.7
48,062 - MPMX19_06784 0.41 -1.4
48,331 + MPMX19_06784 0.63 -1.6
48,394 + MPMX19_06784 0.68 -0.6
48,395 - MPMX19_06784 0.68 -0.9
48,395 - MPMX19_06784 0.68 +0.3
48,418 + MPMX19_06784 0.70 -1.1
48,418 + MPMX19_06784 0.70 -2.1
48,418 + MPMX19_06784 0.70 +0.7
48,418 + MPMX19_06784 0.70 -0.1
48,418 + MPMX19_06784 0.70 +0.5
48,419 - MPMX19_06784 0.70 +1.2
48,419 - MPMX19_06784 0.70 -0.2
48,530 - MPMX19_06784 0.80 -1.3
48,667 + -1.9
48,667 + -1.1
48,667 + +0.4
48,668 - +0.5
49,741 + MPMX19_06785 0.88 -1.4
49,741 + MPMX19_06785 0.88 -0.8
49,742 - MPMX19_06785 0.88 +1.6
49,742 - MPMX19_06785 0.88 +1.1
49,742 - MPMX19_06785 0.88 -1.4
49,742 - MPMX19_06785 0.88 +0.4
49,742 - MPMX19_06785 0.88 +1.1
49,834 - -0.4
50,115 + +0.2
50,116 - -0.1
50,116 - +0.3
50,116 - -1.5
50,116 - -2.0
50,116 - +0.5
50,170 - -0.5
50,598 - -0.7
50,598 - +2.1
50,598 - +0.5
50,598 - +0.3

Or see this region's nucleotide sequence