Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06778

Experiment: NL-CCM, start OD=0.3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_06776 and MPMX19_06777 are separated by 210 nucleotidesMPMX19_06777 and MPMX19_06778 are separated by 16 nucleotidesMPMX19_06778 and MPMX19_06779 are separated by 136 nucleotidesMPMX19_06779 and MPMX19_06780 are separated by 86 nucleotides MPMX19_06776: MPMX19_06776 - hypothetical protein, at 41,700 to 42,107 _06776 MPMX19_06777: MPMX19_06777 - hypothetical protein, at 42,318 to 43,022 _06777 MPMX19_06778: MPMX19_06778 - HTH-type transcriptional regulator YhaJ, at 43,039 to 43,968 _06778 MPMX19_06779: MPMX19_06779 - Quercetin 2,3-dioxygenase, at 44,105 to 44,803 _06779 MPMX19_06780: MPMX19_06780 - Potassium channel, at 44,890 to 45,465 _06780 Position (kb) 43 44Strain fitness (log2 ratio) -2 -1 0 1at 42.147 kb on + strandat 42.482 kb on + strand, within MPMX19_06777at 42.483 kb on - strand, within MPMX19_06777at 42.483 kb on - strand, within MPMX19_06777at 42.696 kb on + strand, within MPMX19_06777at 43.160 kb on + strand, within MPMX19_06778at 43.160 kb on + strand, within MPMX19_06778at 43.160 kb on + strand, within MPMX19_06778at 43.160 kb on + strand, within MPMX19_06778at 43.160 kb on + strand, within MPMX19_06778at 43.160 kb on + strand, within MPMX19_06778at 43.161 kb on - strand, within MPMX19_06778at 43.161 kb on - strand, within MPMX19_06778at 43.161 kb on - strand, within MPMX19_06778at 43.161 kb on - strand, within MPMX19_06778at 43.161 kb on - strand, within MPMX19_06778at 43.850 kb on + strand, within MPMX19_06778at 43.850 kb on + strand, within MPMX19_06778at 43.850 kb on + strand, within MPMX19_06778at 43.851 kb on - strand, within MPMX19_06778at 43.851 kb on - strand, within MPMX19_06778at 43.851 kb on - strand, within MPMX19_06778at 44.032 kb on + strandat 44.032 kb on + strandat 44.032 kb on + strandat 44.032 kb on + strandat 44.032 kb on + strandat 44.032 kb on + strandat 44.032 kb on + strandat 44.033 kb on - strandat 44.033 kb on - strandat 44.033 kb on - strandat 44.033 kb on - strandat 44.033 kb on - strandat 44.033 kb on - strandat 44.033 kb on - strandat 44.033 kb on - strandat 44.033 kb on - strandat 44.189 kb on + strand, within MPMX19_06779at 44.189 kb on + strand, within MPMX19_06779at 44.189 kb on + strand, within MPMX19_06779at 44.189 kb on + strand, within MPMX19_06779at 44.189 kb on + strand, within MPMX19_06779at 44.189 kb on + strand, within MPMX19_06779at 44.189 kb on + strand, within MPMX19_06779at 44.189 kb on + strand, within MPMX19_06779at 44.190 kb on - strand, within MPMX19_06779at 44.190 kb on - strand, within MPMX19_06779at 44.190 kb on - strand, within MPMX19_06779at 44.190 kb on - strand, within MPMX19_06779at 44.190 kb on - strand, within MPMX19_06779at 44.190 kb on - strand, within MPMX19_06779at 44.190 kb on - strand, within MPMX19_06779at 44.190 kb on - strand, within MPMX19_06779at 44.192 kb on + strand, within MPMX19_06779at 44.192 kb on + strand, within MPMX19_06779at 44.192 kb on + strand, within MPMX19_06779at 44.192 kb on + strand, within MPMX19_06779at 44.193 kb on - strand, within MPMX19_06779at 44.193 kb on - strand, within MPMX19_06779at 44.303 kb on + strand, within MPMX19_06779at 44.303 kb on + strand, within MPMX19_06779at 44.303 kb on + strand, within MPMX19_06779at 44.303 kb on + strand, within MPMX19_06779at 44.303 kb on + strand, within MPMX19_06779at 44.304 kb on - strand, within MPMX19_06779at 44.304 kb on - strand, within MPMX19_06779at 44.304 kb on - strand, within MPMX19_06779at 44.304 kb on - strand, within MPMX19_06779at 44.304 kb on - strand, within MPMX19_06779at 44.304 kb on - strand, within MPMX19_06779at 44.304 kb on - strand, within MPMX19_06779at 44.304 kb on - strand, within MPMX19_06779at 44.304 kb on - strand, within MPMX19_06779at 44.357 kb on - strand, within MPMX19_06779at 44.636 kb on + strand, within MPMX19_06779at 44.637 kb on - strand, within MPMX19_06779at 44.663 kb on + strand, within MPMX19_06779at 44.663 kb on + strand, within MPMX19_06779at 44.664 kb on - strand, within MPMX19_06779

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
remove
42,147 + -2.3
42,482 + MPMX19_06777 0.23 -0.6
42,483 - MPMX19_06777 0.23 +0.5
42,483 - MPMX19_06777 0.23 +0.2
42,696 + MPMX19_06777 0.54 +0.2
43,160 + MPMX19_06778 0.13 -0.7
43,160 + MPMX19_06778 0.13 +0.1
43,160 + MPMX19_06778 0.13 +1.1
43,160 + MPMX19_06778 0.13 -0.2
43,160 + MPMX19_06778 0.13 +0.3
43,160 + MPMX19_06778 0.13 -0.0
43,161 - MPMX19_06778 0.13 -0.2
43,161 - MPMX19_06778 0.13 +0.1
43,161 - MPMX19_06778 0.13 -0.6
43,161 - MPMX19_06778 0.13 -0.7
43,161 - MPMX19_06778 0.13 -1.1
43,850 + MPMX19_06778 0.87 -0.8
43,850 + MPMX19_06778 0.87 +0.1
43,850 + MPMX19_06778 0.87 -1.1
43,851 - MPMX19_06778 0.87 +1.5
43,851 - MPMX19_06778 0.87 +0.6
43,851 - MPMX19_06778 0.87 +0.3
44,032 + -0.5
44,032 + -0.5
44,032 + -1.7
44,032 + -0.7
44,032 + -0.2
44,032 + +1.1
44,032 + -1.1
44,033 - -0.9
44,033 - -0.5
44,033 - -1.1
44,033 - +0.1
44,033 - -2.1
44,033 - -0.8
44,033 - -0.2
44,033 - -0.2
44,033 - -0.2
44,189 + MPMX19_06779 0.12 +0.2
44,189 + MPMX19_06779 0.12 -0.2
44,189 + MPMX19_06779 0.12 -0.2
44,189 + MPMX19_06779 0.12 -0.2
44,189 + MPMX19_06779 0.12 -1.3
44,189 + MPMX19_06779 0.12 -0.4
44,189 + MPMX19_06779 0.12 +0.7
44,189 + MPMX19_06779 0.12 +0.5
44,190 - MPMX19_06779 0.12 -0.1
44,190 - MPMX19_06779 0.12 -0.2
44,190 - MPMX19_06779 0.12 -1.1
44,190 - MPMX19_06779 0.12 -0.5
44,190 - MPMX19_06779 0.12 +0.2
44,190 - MPMX19_06779 0.12 -0.7
44,190 - MPMX19_06779 0.12 +0.2
44,190 - MPMX19_06779 0.12 +0.2
44,192 + MPMX19_06779 0.12 +0.1
44,192 + MPMX19_06779 0.12 -1.2
44,192 + MPMX19_06779 0.12 +0.2
44,192 + MPMX19_06779 0.12 -1.5
44,193 - MPMX19_06779 0.13 -0.5
44,193 - MPMX19_06779 0.13 +0.2
44,303 + MPMX19_06779 0.28 -1.2
44,303 + MPMX19_06779 0.28 -1.4
44,303 + MPMX19_06779 0.28 +0.3
44,303 + MPMX19_06779 0.28 +0.3
44,303 + MPMX19_06779 0.28 -0.2
44,304 - MPMX19_06779 0.28 -1.2
44,304 - MPMX19_06779 0.28 -0.5
44,304 - MPMX19_06779 0.28 +0.3
44,304 - MPMX19_06779 0.28 -1.2
44,304 - MPMX19_06779 0.28 -0.0
44,304 - MPMX19_06779 0.28 -0.5
44,304 - MPMX19_06779 0.28 -0.8
44,304 - MPMX19_06779 0.28 -0.3
44,304 - MPMX19_06779 0.28 -2.5
44,357 - MPMX19_06779 0.36 +0.7
44,636 + MPMX19_06779 0.76 -1.0
44,637 - MPMX19_06779 0.76 -0.3
44,663 + MPMX19_06779 0.80 +1.1
44,663 + MPMX19_06779 0.80 +0.6
44,664 - MPMX19_06779 0.80 -1.3

Or see this region's nucleotide sequence