Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06770

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06768 and MPMX19_06769 overlap by 4 nucleotidesMPMX19_06769 and MPMX19_06770 are separated by 14 nucleotidesMPMX19_06770 and MPMX19_06771 overlap by 4 nucleotidesMPMX19_06771 and MPMX19_06772 are separated by 26 nucleotides MPMX19_06768: MPMX19_06768 - hypothetical protein, at 34,782 to 35,804 _06768 MPMX19_06769: MPMX19_06769 - hypothetical protein, at 35,801 to 36,781 _06769 MPMX19_06770: MPMX19_06770 - NAD-dependent glycerol dehydrogenase, at 36,796 to 37,614 _06770 MPMX19_06771: MPMX19_06771 - hypothetical protein, at 37,611 to 38,417 _06771 MPMX19_06772: MPMX19_06772 - hypothetical protein, at 38,444 to 39,004 _06772 Position (kb) 36 37 38Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 35.910 kb on - strand, within MPMX19_06769at 35.963 kb on + strand, within MPMX19_06769at 35.963 kb on + strand, within MPMX19_06769at 35.964 kb on - strand, within MPMX19_06769at 36.377 kb on + strand, within MPMX19_06769at 36.378 kb on - strand, within MPMX19_06769at 36.378 kb on - strand, within MPMX19_06769at 36.398 kb on + strand, within MPMX19_06769at 36.398 kb on + strand, within MPMX19_06769at 36.398 kb on + strand, within MPMX19_06769at 36.398 kb on + strand, within MPMX19_06769at 36.399 kb on - strand, within MPMX19_06769at 36.399 kb on - strand, within MPMX19_06769at 36.399 kb on - strand, within MPMX19_06769at 36.399 kb on - strand, within MPMX19_06769at 36.536 kb on + strand, within MPMX19_06769at 36.536 kb on + strand, within MPMX19_06769at 36.536 kb on + strand, within MPMX19_06769at 36.536 kb on + strand, within MPMX19_06769at 36.536 kb on + strand, within MPMX19_06769at 36.536 kb on + strand, within MPMX19_06769at 36.537 kb on - strand, within MPMX19_06769at 36.537 kb on - strand, within MPMX19_06769at 36.579 kb on - strand, within MPMX19_06769at 36.641 kb on + strand, within MPMX19_06769at 36.642 kb on - strand, within MPMX19_06769at 37.150 kb on + strand, within MPMX19_06770at 37.150 kb on + strand, within MPMX19_06770at 37.150 kb on + strand, within MPMX19_06770at 37.150 kb on + strand, within MPMX19_06770at 37.150 kb on + strand, within MPMX19_06770at 37.150 kb on + strand, within MPMX19_06770at 37.151 kb on - strand, within MPMX19_06770at 37.151 kb on - strand, within MPMX19_06770at 37.151 kb on - strand, within MPMX19_06770at 37.151 kb on - strand, within MPMX19_06770at 37.151 kb on - strand, within MPMX19_06770at 37.151 kb on - strand, within MPMX19_06770at 37.153 kb on + strand, within MPMX19_06770at 37.153 kb on + strand, within MPMX19_06770at 37.153 kb on + strand, within MPMX19_06770at 37.154 kb on - strand, within MPMX19_06770at 37.154 kb on - strand, within MPMX19_06770at 37.154 kb on - strand, within MPMX19_06770at 37.255 kb on + strand, within MPMX19_06770at 37.255 kb on + strand, within MPMX19_06770at 37.255 kb on + strand, within MPMX19_06770at 37.255 kb on + strand, within MPMX19_06770at 37.256 kb on - strand, within MPMX19_06770at 37.558 kb on + strandat 37.558 kb on + strandat 37.558 kb on + strandat 37.558 kb on + strandat 37.558 kb on + strandat 37.632 kb on + strandat 37.632 kb on + strandat 37.632 kb on + strandat 37.632 kb on + strandat 37.633 kb on - strandat 37.633 kb on - strandat 37.633 kb on - strandat 37.633 kb on - strandat 37.635 kb on + strandat 37.635 kb on + strandat 37.635 kb on + strandat 37.635 kb on + strandat 37.636 kb on - strandat 37.636 kb on - strandat 37.636 kb on - strandat 37.636 kb on - strandat 37.636 kb on - strandat 38.109 kb on + strand, within MPMX19_06771at 38.109 kb on + strand, within MPMX19_06771at 38.109 kb on + strand, within MPMX19_06771at 38.110 kb on - strand, within MPMX19_06771at 38.110 kb on - strand, within MPMX19_06771at 38.110 kb on - strand, within MPMX19_06771at 38.110 kb on - strand, within MPMX19_06771at 38.110 kb on - strand, within MPMX19_06771at 38.110 kb on - strand, within MPMX19_06771at 38.169 kb on + strand, within MPMX19_06771at 38.169 kb on + strand, within MPMX19_06771at 38.169 kb on + strand, within MPMX19_06771at 38.169 kb on + strand, within MPMX19_06771at 38.169 kb on + strand, within MPMX19_06771at 38.169 kb on + strand, within MPMX19_06771at 38.169 kb on + strand, within MPMX19_06771at 38.170 kb on - strand, within MPMX19_06771at 38.170 kb on - strand, within MPMX19_06771at 38.170 kb on - strand, within MPMX19_06771at 38.170 kb on - strand, within MPMX19_06771at 38.170 kb on - strand, within MPMX19_06771

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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35,910 - MPMX19_06769 0.11 -0.7
35,963 + MPMX19_06769 0.17 +0.4
35,963 + MPMX19_06769 0.17 -0.8
35,964 - MPMX19_06769 0.17 +0.5
36,377 + MPMX19_06769 0.59 -0.5
36,378 - MPMX19_06769 0.59 -1.4
36,378 - MPMX19_06769 0.59 -0.5
36,398 + MPMX19_06769 0.61 -1.5
36,398 + MPMX19_06769 0.61 +2.1
36,398 + MPMX19_06769 0.61 +0.4
36,398 + MPMX19_06769 0.61 +0.0
36,399 - MPMX19_06769 0.61 +0.9
36,399 - MPMX19_06769 0.61 -1.8
36,399 - MPMX19_06769 0.61 -0.6
36,399 - MPMX19_06769 0.61 -2.9
36,536 + MPMX19_06769 0.75 -0.3
36,536 + MPMX19_06769 0.75 +0.7
36,536 + MPMX19_06769 0.75 -1.2
36,536 + MPMX19_06769 0.75 -0.4
36,536 + MPMX19_06769 0.75 -2.4
36,536 + MPMX19_06769 0.75 +0.1
36,537 - MPMX19_06769 0.75 +0.3
36,537 - MPMX19_06769 0.75 -0.1
36,579 - MPMX19_06769 0.79 +0.9
36,641 + MPMX19_06769 0.86 -1.1
36,642 - MPMX19_06769 0.86 +1.1
37,150 + MPMX19_06770 0.43 +1.4
37,150 + MPMX19_06770 0.43 +0.6
37,150 + MPMX19_06770 0.43 +0.2
37,150 + MPMX19_06770 0.43 -0.9
37,150 + MPMX19_06770 0.43 -0.6
37,150 + MPMX19_06770 0.43 +1.1
37,151 - MPMX19_06770 0.43 -1.5
37,151 - MPMX19_06770 0.43 -0.7
37,151 - MPMX19_06770 0.43 +0.3
37,151 - MPMX19_06770 0.43 +0.2
37,151 - MPMX19_06770 0.43 -1.0
37,151 - MPMX19_06770 0.43 +0.1
37,153 + MPMX19_06770 0.44 -2.0
37,153 + MPMX19_06770 0.44 +0.2
37,153 + MPMX19_06770 0.44 -0.9
37,154 - MPMX19_06770 0.44 +0.2
37,154 - MPMX19_06770 0.44 +0.3
37,154 - MPMX19_06770 0.44 +0.3
37,255 + MPMX19_06770 0.56 -1.0
37,255 + MPMX19_06770 0.56 -0.5
37,255 + MPMX19_06770 0.56 -0.6
37,255 + MPMX19_06770 0.56 -0.7
37,256 - MPMX19_06770 0.56 +0.8
37,558 + +1.3
37,558 + -0.1
37,558 + -1.7
37,558 + -0.6
37,558 + -1.7
37,632 + -2.7
37,632 + +0.4
37,632 + -0.2
37,632 + -0.7
37,633 - +1.1
37,633 - -1.2
37,633 - -1.7
37,633 - +1.9
37,635 + +0.3
37,635 + -0.3
37,635 + -1.2
37,635 + -1.1
37,636 - -0.1
37,636 - -1.1
37,636 - -1.4
37,636 - +0.3
37,636 - -1.9
38,109 + MPMX19_06771 0.62 -1.2
38,109 + MPMX19_06771 0.62 -1.8
38,109 + MPMX19_06771 0.62 -0.2
38,110 - MPMX19_06771 0.62 +0.3
38,110 - MPMX19_06771 0.62 -0.3
38,110 - MPMX19_06771 0.62 +0.7
38,110 - MPMX19_06771 0.62 -1.1
38,110 - MPMX19_06771 0.62 +0.8
38,110 - MPMX19_06771 0.62 -1.5
38,169 + MPMX19_06771 0.69 -2.4
38,169 + MPMX19_06771 0.69 +0.0
38,169 + MPMX19_06771 0.69 -1.2
38,169 + MPMX19_06771 0.69 -0.5
38,169 + MPMX19_06771 0.69 -2.0
38,169 + MPMX19_06771 0.69 -0.1
38,169 + MPMX19_06771 0.69 -2.0
38,170 - MPMX19_06771 0.69 +1.1
38,170 - MPMX19_06771 0.69 -1.4
38,170 - MPMX19_06771 0.69 +0.6
38,170 - MPMX19_06771 0.69 -0.1
38,170 - MPMX19_06771 0.69 +0.3

Or see this region's nucleotide sequence