Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06768 and MPMX19_06769 overlap by 4 nucleotides MPMX19_06769 and MPMX19_06770 are separated by 14 nucleotides MPMX19_06770 and MPMX19_06771 overlap by 4 nucleotides
MPMX19_06768: MPMX19_06768 - hypothetical protein, at 34,782 to 35,804
_06768
MPMX19_06769: MPMX19_06769 - hypothetical protein, at 35,801 to 36,781
_06769
MPMX19_06770: MPMX19_06770 - NAD-dependent glycerol dehydrogenase, at 36,796 to 37,614
_06770
MPMX19_06771: MPMX19_06771 - hypothetical protein, at 37,611 to 38,417
_06771
Position (kb) 35
36
37 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 34.903 kb on - strand, within MPMX19_06768 at 34.917 kb on + strand, within MPMX19_06768 at 35.034 kb on + strand, within MPMX19_06768 at 35.035 kb on - strand, within MPMX19_06768 at 35.035 kb on - strand, within MPMX19_06768 at 35.116 kb on - strand, within MPMX19_06768 at 35.277 kb on + strand, within MPMX19_06768 at 35.277 kb on + strand, within MPMX19_06768 at 35.277 kb on + strand, within MPMX19_06768 at 35.278 kb on - strand, within MPMX19_06768 at 35.784 kb on + strand at 35.784 kb on + strand at 35.785 kb on - strand at 35.785 kb on - strand at 35.910 kb on - strand, within MPMX19_06769 at 35.963 kb on + strand, within MPMX19_06769 at 35.963 kb on + strand, within MPMX19_06769 at 35.964 kb on - strand, within MPMX19_06769 at 36.377 kb on + strand, within MPMX19_06769 at 36.378 kb on - strand, within MPMX19_06769 at 36.378 kb on - strand, within MPMX19_06769 at 36.398 kb on + strand, within MPMX19_06769 at 36.398 kb on + strand, within MPMX19_06769 at 36.398 kb on + strand, within MPMX19_06769 at 36.398 kb on + strand, within MPMX19_06769 at 36.399 kb on - strand, within MPMX19_06769 at 36.399 kb on - strand, within MPMX19_06769 at 36.399 kb on - strand, within MPMX19_06769 at 36.399 kb on - strand, within MPMX19_06769 at 36.536 kb on + strand, within MPMX19_06769 at 36.536 kb on + strand, within MPMX19_06769 at 36.536 kb on + strand, within MPMX19_06769 at 36.536 kb on + strand, within MPMX19_06769 at 36.536 kb on + strand, within MPMX19_06769 at 36.536 kb on + strand, within MPMX19_06769 at 36.537 kb on - strand, within MPMX19_06769 at 36.537 kb on - strand, within MPMX19_06769 at 36.579 kb on - strand, within MPMX19_06769 at 36.641 kb on + strand, within MPMX19_06769 at 36.642 kb on - strand, within MPMX19_06769 at 37.150 kb on + strand, within MPMX19_06770 at 37.150 kb on + strand, within MPMX19_06770 at 37.150 kb on + strand, within MPMX19_06770 at 37.150 kb on + strand, within MPMX19_06770 at 37.150 kb on + strand, within MPMX19_06770 at 37.150 kb on + strand, within MPMX19_06770 at 37.151 kb on - strand, within MPMX19_06770 at 37.151 kb on - strand, within MPMX19_06770 at 37.151 kb on - strand, within MPMX19_06770 at 37.151 kb on - strand, within MPMX19_06770 at 37.151 kb on - strand, within MPMX19_06770 at 37.151 kb on - strand, within MPMX19_06770 at 37.153 kb on + strand, within MPMX19_06770 at 37.153 kb on + strand, within MPMX19_06770 at 37.153 kb on + strand, within MPMX19_06770 at 37.154 kb on - strand, within MPMX19_06770 at 37.154 kb on - strand, within MPMX19_06770 at 37.154 kb on - strand, within MPMX19_06770 at 37.255 kb on + strand, within MPMX19_06770 at 37.255 kb on + strand, within MPMX19_06770 at 37.255 kb on + strand, within MPMX19_06770 at 37.255 kb on + strand, within MPMX19_06770 at 37.256 kb on - strand, within MPMX19_06770 at 37.558 kb on + strand at 37.558 kb on + strand at 37.558 kb on + strand at 37.558 kb on + strand at 37.558 kb on + strand at 37.632 kb on + strand at 37.632 kb on + strand at 37.632 kb on + strand at 37.632 kb on + strand at 37.633 kb on - strand at 37.633 kb on - strand at 37.633 kb on - strand at 37.633 kb on - strand at 37.635 kb on + strand at 37.635 kb on + strand at 37.635 kb on + strand at 37.635 kb on + strand at 37.636 kb on - strand at 37.636 kb on - strand at 37.636 kb on - strand at 37.636 kb on - strand at 37.636 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 34,903 - MPMX19_06768 0.12 -0.9 34,917 + MPMX19_06768 0.13 -1.5 35,034 + MPMX19_06768 0.25 -1.7 35,035 - MPMX19_06768 0.25 +0.4 35,035 - MPMX19_06768 0.25 +0.3 35,116 - MPMX19_06768 0.33 -0.0 35,277 + MPMX19_06768 0.48 +2.3 35,277 + MPMX19_06768 0.48 -0.7 35,277 + MPMX19_06768 0.48 -1.9 35,278 - MPMX19_06768 0.48 +0.8 35,784 + +0.8 35,784 + -1.4 35,785 - +0.1 35,785 - -0.8 35,910 - MPMX19_06769 0.11 -0.7 35,963 + MPMX19_06769 0.17 +0.4 35,963 + MPMX19_06769 0.17 -0.8 35,964 - MPMX19_06769 0.17 +0.5 36,377 + MPMX19_06769 0.59 -0.5 36,378 - MPMX19_06769 0.59 -1.4 36,378 - MPMX19_06769 0.59 -0.5 36,398 + MPMX19_06769 0.61 -1.5 36,398 + MPMX19_06769 0.61 +2.1 36,398 + MPMX19_06769 0.61 +0.4 36,398 + MPMX19_06769 0.61 +0.0 36,399 - MPMX19_06769 0.61 +0.9 36,399 - MPMX19_06769 0.61 -1.8 36,399 - MPMX19_06769 0.61 -0.6 36,399 - MPMX19_06769 0.61 -2.9 36,536 + MPMX19_06769 0.75 -0.3 36,536 + MPMX19_06769 0.75 +0.7 36,536 + MPMX19_06769 0.75 -1.2 36,536 + MPMX19_06769 0.75 -0.4 36,536 + MPMX19_06769 0.75 -2.4 36,536 + MPMX19_06769 0.75 +0.1 36,537 - MPMX19_06769 0.75 +0.3 36,537 - MPMX19_06769 0.75 -0.1 36,579 - MPMX19_06769 0.79 +0.9 36,641 + MPMX19_06769 0.86 -1.1 36,642 - MPMX19_06769 0.86 +1.1 37,150 + MPMX19_06770 0.43 +1.4 37,150 + MPMX19_06770 0.43 +0.6 37,150 + MPMX19_06770 0.43 +0.2 37,150 + MPMX19_06770 0.43 -0.9 37,150 + MPMX19_06770 0.43 -0.6 37,150 + MPMX19_06770 0.43 +1.1 37,151 - MPMX19_06770 0.43 -1.5 37,151 - MPMX19_06770 0.43 -0.7 37,151 - MPMX19_06770 0.43 +0.3 37,151 - MPMX19_06770 0.43 +0.2 37,151 - MPMX19_06770 0.43 -1.0 37,151 - MPMX19_06770 0.43 +0.1 37,153 + MPMX19_06770 0.44 -2.0 37,153 + MPMX19_06770 0.44 +0.2 37,153 + MPMX19_06770 0.44 -0.9 37,154 - MPMX19_06770 0.44 +0.2 37,154 - MPMX19_06770 0.44 +0.3 37,154 - MPMX19_06770 0.44 +0.3 37,255 + MPMX19_06770 0.56 -1.0 37,255 + MPMX19_06770 0.56 -0.5 37,255 + MPMX19_06770 0.56 -0.6 37,255 + MPMX19_06770 0.56 -0.7 37,256 - MPMX19_06770 0.56 +0.8 37,558 + +1.3 37,558 + -0.1 37,558 + -1.7 37,558 + -0.6 37,558 + -1.7 37,632 + -2.7 37,632 + +0.4 37,632 + -0.2 37,632 + -0.7 37,633 - +1.1 37,633 - -1.2 37,633 - -1.7 37,633 - +1.9 37,635 + +0.3 37,635 + -0.3 37,635 + -1.2 37,635 + -1.1 37,636 - -0.1 37,636 - -1.1 37,636 - -1.4 37,636 - +0.3 37,636 - -1.9
Or see this region's nucleotide sequence