Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06765 and MPMX19_06766 are separated by 222 nucleotides MPMX19_06766 and MPMX19_06767 overlap by 4 nucleotides
MPMX19_06765: MPMX19_06765 - Hydrogen peroxide-inducible genes activator, at 31,100 to 32,032
_06765
MPMX19_06766: MPMX19_06766 - Bicarbonate transport ATP-binding protein CmpC, at 32,255 to 33,187
_06766
MPMX19_06767: MPMX19_06767 - hypothetical protein, at 33,184 to 34,701
_06767
Position (kb) 32
33
34 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 31.593 kb on + strand, within MPMX19_06765 at 31.594 kb on - strand, within MPMX19_06765 at 31.594 kb on - strand, within MPMX19_06765 at 32.136 kb on + strand at 32.136 kb on + strand at 32.137 kb on - strand at 32.137 kb on - strand at 32.137 kb on - strand at 32.160 kb on + strand at 32.160 kb on + strand at 32.160 kb on + strand at 32.161 kb on - strand at 32.265 kb on + strand at 32.265 kb on + strand at 32.265 kb on + strand at 32.266 kb on - strand at 32.435 kb on + strand, within MPMX19_06766 at 33.262 kb on + strand at 33.262 kb on + strand at 33.263 kb on - strand at 33.475 kb on + strand, within MPMX19_06767 at 33.475 kb on + strand, within MPMX19_06767 at 33.475 kb on + strand, within MPMX19_06767 at 33.475 kb on + strand, within MPMX19_06767 at 33.476 kb on - strand, within MPMX19_06767 at 33.476 kb on - strand, within MPMX19_06767 at 33.476 kb on - strand, within MPMX19_06767 at 33.476 kb on - strand, within MPMX19_06767 at 33.476 kb on - strand, within MPMX19_06767 at 33.476 kb on - strand, within MPMX19_06767 at 33.478 kb on + strand, within MPMX19_06767 at 33.478 kb on + strand, within MPMX19_06767 at 33.478 kb on + strand, within MPMX19_06767 at 33.478 kb on + strand, within MPMX19_06767 at 33.479 kb on - strand, within MPMX19_06767 at 33.479 kb on - strand, within MPMX19_06767 at 33.503 kb on - strand, within MPMX19_06767 at 33.503 kb on - strand, within MPMX19_06767 at 33.503 kb on - strand, within MPMX19_06767 at 33.565 kb on + strand, within MPMX19_06767 at 33.566 kb on - strand, within MPMX19_06767 at 33.647 kb on - strand, within MPMX19_06767 at 33.647 kb on - strand, within MPMX19_06767 at 33.647 kb on - strand, within MPMX19_06767 at 33.736 kb on + strand, within MPMX19_06767 at 33.737 kb on - strand, within MPMX19_06767 at 33.794 kb on - strand, within MPMX19_06767 at 33.811 kb on + strand, within MPMX19_06767 at 33.812 kb on - strand, within MPMX19_06767 at 33.838 kb on + strand, within MPMX19_06767 at 33.838 kb on + strand, within MPMX19_06767 at 33.838 kb on + strand, within MPMX19_06767 at 33.838 kb on + strand, within MPMX19_06767 at 33.839 kb on - strand, within MPMX19_06767 at 33.839 kb on - strand, within MPMX19_06767
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 31,593 + MPMX19_06765 0.53 +0.3 31,594 - MPMX19_06765 0.53 -3.3 31,594 - MPMX19_06765 0.53 -1.2 32,136 + +1.1 32,136 + +0.4 32,137 - -2.0 32,137 - -0.9 32,137 - -0.5 32,160 + +0.9 32,160 + -1.1 32,160 + +0.3 32,161 - +0.2 32,265 + -0.6 32,265 + -0.4 32,265 + +0.6 32,266 - +0.5 32,435 + MPMX19_06766 0.19 +0.1 33,262 + -0.2 33,262 + -0.5 33,263 - +1.1 33,475 + MPMX19_06767 0.19 +1.6 33,475 + MPMX19_06767 0.19 -0.5 33,475 + MPMX19_06767 0.19 -0.8 33,475 + MPMX19_06767 0.19 -1.1 33,476 - MPMX19_06767 0.19 -0.6 33,476 - MPMX19_06767 0.19 +0.3 33,476 - MPMX19_06767 0.19 +0.4 33,476 - MPMX19_06767 0.19 -0.7 33,476 - MPMX19_06767 0.19 -0.9 33,476 - MPMX19_06767 0.19 -2.7 33,478 + MPMX19_06767 0.19 -0.5 33,478 + MPMX19_06767 0.19 +0.6 33,478 + MPMX19_06767 0.19 -2.3 33,478 + MPMX19_06767 0.19 -0.5 33,479 - MPMX19_06767 0.19 -0.7 33,479 - MPMX19_06767 0.19 -0.2 33,503 - MPMX19_06767 0.21 +0.1 33,503 - MPMX19_06767 0.21 -1.1 33,503 - MPMX19_06767 0.21 -1.0 33,565 + MPMX19_06767 0.25 -0.7 33,566 - MPMX19_06767 0.25 -0.1 33,647 - MPMX19_06767 0.31 -0.1 33,647 - MPMX19_06767 0.31 -0.9 33,647 - MPMX19_06767 0.31 -1.2 33,736 + MPMX19_06767 0.36 -0.2 33,737 - MPMX19_06767 0.36 +0.3 33,794 - MPMX19_06767 0.40 +0.7 33,811 + MPMX19_06767 0.41 +0.2 33,812 - MPMX19_06767 0.41 -0.3 33,838 + MPMX19_06767 0.43 -0.1 33,838 + MPMX19_06767 0.43 -0.2 33,838 + MPMX19_06767 0.43 +0.5 33,838 + MPMX19_06767 0.43 -0.7 33,839 - MPMX19_06767 0.43 -1.8 33,839 - MPMX19_06767 0.43 -0.8
Or see this region's nucleotide sequence