Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06738

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06737 and MPMX19_06738 are separated by 17 nucleotidesMPMX19_06738 and MPMX19_06739 are separated by 150 nucleotides MPMX19_06737: MPMX19_06737 - 2-oxoisovalerate dehydrogenase subunit beta, at 1,741 to 2,712 _06737 MPMX19_06738: MPMX19_06738 - Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha, at 2,730 to 3,680 _06738 MPMX19_06739: MPMX19_06739 - hypothetical protein, at 3,831 to 5,192 _06739 Position (kb) 2 3 4Strain fitness (log2 ratio) -2 -1 0 1at 2.198 kb on + strand, within MPMX19_06737at 2.199 kb on - strand, within MPMX19_06737at 2.199 kb on - strand, within MPMX19_06737at 2.423 kb on + strand, within MPMX19_06737at 2.423 kb on + strand, within MPMX19_06737at 2.424 kb on - strand, within MPMX19_06737at 2.424 kb on - strand, within MPMX19_06737at 2.424 kb on - strand, within MPMX19_06737at 2.424 kb on - strand, within MPMX19_06737at 2.424 kb on - strand, within MPMX19_06737at 2.424 kb on - strand, within MPMX19_06737at 2.465 kb on + strand, within MPMX19_06737at 2.465 kb on + strand, within MPMX19_06737at 2.737 kb on + strandat 2.737 kb on + strandat 2.737 kb on + strandat 2.737 kb on + strandat 2.737 kb on + strandat 2.737 kb on + strandat 2.738 kb on - strandat 2.938 kb on + strand, within MPMX19_06738at 2.938 kb on + strand, within MPMX19_06738at 2.938 kb on + strand, within MPMX19_06738at 2.938 kb on + strand, within MPMX19_06738at 2.939 kb on - strand, within MPMX19_06738at 2.939 kb on - strand, within MPMX19_06738at 2.977 kb on + strand, within MPMX19_06738at 2.978 kb on - strand, within MPMX19_06738at 3.098 kb on - strand, within MPMX19_06738at 3.098 kb on - strand, within MPMX19_06738at 3.184 kb on + strand, within MPMX19_06738at 3.184 kb on + strand, within MPMX19_06738at 3.184 kb on + strand, within MPMX19_06738at 3.184 kb on + strand, within MPMX19_06738at 3.184 kb on + strand, within MPMX19_06738at 3.185 kb on - strand, within MPMX19_06738at 3.185 kb on - strand, within MPMX19_06738at 3.185 kb on - strand, within MPMX19_06738at 3.626 kb on - strandat 3.720 kb on - strandat 3.745 kb on + strandat 3.745 kb on + strandat 3.746 kb on - strandat 3.779 kb on - strandat 4.096 kb on + strand, within MPMX19_06739at 4.096 kb on + strand, within MPMX19_06739at 4.097 kb on - strand, within MPMX19_06739at 4.097 kb on - strand, within MPMX19_06739at 4.132 kb on + strand, within MPMX19_06739at 4.270 kb on + strand, within MPMX19_06739at 4.270 kb on + strand, within MPMX19_06739at 4.270 kb on + strand, within MPMX19_06739at 4.270 kb on + strand, within MPMX19_06739at 4.271 kb on - strand, within MPMX19_06739at 4.447 kb on + strand, within MPMX19_06739at 4.448 kb on - strand, within MPMX19_06739at 4.448 kb on - strand, within MPMX19_06739

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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2,198 + MPMX19_06737 0.47 -2.7
2,199 - MPMX19_06737 0.47 -1.2
2,199 - MPMX19_06737 0.47 +0.1
2,423 + MPMX19_06737 0.70 -0.2
2,423 + MPMX19_06737 0.70 -0.9
2,424 - MPMX19_06737 0.70 -0.2
2,424 - MPMX19_06737 0.70 +0.5
2,424 - MPMX19_06737 0.70 -0.6
2,424 - MPMX19_06737 0.70 -1.2
2,424 - MPMX19_06737 0.70 +0.9
2,424 - MPMX19_06737 0.70 +0.7
2,465 + MPMX19_06737 0.74 -0.8
2,465 + MPMX19_06737 0.74 -0.6
2,737 + -0.5
2,737 + -0.1
2,737 + -0.8
2,737 + +1.3
2,737 + -2.2
2,737 + -0.8
2,738 - +0.5
2,938 + MPMX19_06738 0.22 -1.0
2,938 + MPMX19_06738 0.22 +0.2
2,938 + MPMX19_06738 0.22 +0.8
2,938 + MPMX19_06738 0.22 -1.1
2,939 - MPMX19_06738 0.22 +0.2
2,939 - MPMX19_06738 0.22 -1.5
2,977 + MPMX19_06738 0.26 -1.2
2,978 - MPMX19_06738 0.26 +1.2
3,098 - MPMX19_06738 0.39 -1.4
3,098 - MPMX19_06738 0.39 +0.1
3,184 + MPMX19_06738 0.48 -1.9
3,184 + MPMX19_06738 0.48 -0.9
3,184 + MPMX19_06738 0.48 -1.1
3,184 + MPMX19_06738 0.48 -2.0
3,184 + MPMX19_06738 0.48 +0.1
3,185 - MPMX19_06738 0.48 +0.7
3,185 - MPMX19_06738 0.48 -1.4
3,185 - MPMX19_06738 0.48 -1.6
3,626 - -1.1
3,720 - -0.9
3,745 + -0.2
3,745 + -2.3
3,746 - -0.8
3,779 - -0.8
4,096 + MPMX19_06739 0.19 -0.4
4,096 + MPMX19_06739 0.19 +0.1
4,097 - MPMX19_06739 0.20 -0.4
4,097 - MPMX19_06739 0.20 +1.5
4,132 + MPMX19_06739 0.22 +0.2
4,270 + MPMX19_06739 0.32 -0.5
4,270 + MPMX19_06739 0.32 -0.7
4,270 + MPMX19_06739 0.32 -0.9
4,270 + MPMX19_06739 0.32 -0.4
4,271 - MPMX19_06739 0.32 +0.1
4,447 + MPMX19_06739 0.45 -0.1
4,448 - MPMX19_06739 0.45 -1.9
4,448 - MPMX19_06739 0.45 -1.1

Or see this region's nucleotide sequence