Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06716

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06715 and MPMX19_06716 are separated by 46 nucleotidesMPMX19_06716 and MPMX19_06717 are separated by 126 nucleotides MPMX19_06715: MPMX19_06715 - hypothetical protein, at 287,218 to 288,666 _06715 MPMX19_06716: MPMX19_06716 - hypothetical protein, at 288,713 to 288,883 _06716 MPMX19_06717: MPMX19_06717 - IS5 family transposase ISAzs10, at 289,010 to 290,086 _06717 Position (kb) 288 289Strain fitness (log2 ratio) -2 -1 0 1 2at 287.866 kb on + strand, within MPMX19_06715at 287.866 kb on + strand, within MPMX19_06715at 287.866 kb on + strand, within MPMX19_06715at 287.866 kb on + strand, within MPMX19_06715at 287.866 kb on + strand, within MPMX19_06715at 287.866 kb on + strand, within MPMX19_06715at 287.867 kb on - strand, within MPMX19_06715at 287.867 kb on - strand, within MPMX19_06715at 287.867 kb on - strand, within MPMX19_06715at 287.867 kb on - strand, within MPMX19_06715at 287.867 kb on - strand, within MPMX19_06715at 287.869 kb on + strand, within MPMX19_06715at 287.869 kb on + strand, within MPMX19_06715at 287.869 kb on + strand, within MPMX19_06715at 287.869 kb on + strand, within MPMX19_06715at 287.869 kb on + strand, within MPMX19_06715at 287.869 kb on + strand, within MPMX19_06715at 287.869 kb on + strand, within MPMX19_06715at 287.869 kb on + strand, within MPMX19_06715at 287.869 kb on + strand, within MPMX19_06715at 287.869 kb on + strand, within MPMX19_06715at 287.869 kb on + strand, within MPMX19_06715at 287.870 kb on - strand, within MPMX19_06715at 287.870 kb on - strand, within MPMX19_06715at 287.870 kb on - strand, within MPMX19_06715at 287.870 kb on - strand, within MPMX19_06715at 287.870 kb on - strand, within MPMX19_06715at 287.870 kb on - strand, within MPMX19_06715at 287.870 kb on - strand, within MPMX19_06715at 287.870 kb on - strand, within MPMX19_06715at 287.870 kb on - strand, within MPMX19_06715at 287.870 kb on - strand, within MPMX19_06715at 287.870 kb on - strand, within MPMX19_06715at 287.870 kb on - strand, within MPMX19_06715at 287.935 kb on + strand, within MPMX19_06715at 287.936 kb on - strand, within MPMX19_06715at 287.936 kb on - strand, within MPMX19_06715at 287.936 kb on - strand, within MPMX19_06715at 287.936 kb on - strand, within MPMX19_06715at 287.936 kb on - strand, within MPMX19_06715at 288.264 kb on + strand, within MPMX19_06715at 288.265 kb on - strand, within MPMX19_06715at 288.307 kb on + strand, within MPMX19_06715at 288.307 kb on + strand, within MPMX19_06715at 288.307 kb on + strand, within MPMX19_06715at 288.307 kb on + strand, within MPMX19_06715at 288.307 kb on + strand, within MPMX19_06715at 288.308 kb on - strand, within MPMX19_06715at 288.308 kb on - strand, within MPMX19_06715at 288.308 kb on - strand, within MPMX19_06715at 288.308 kb on - strand, within MPMX19_06715at 288.308 kb on - strand, within MPMX19_06715at 288.308 kb on - strand, within MPMX19_06715at 288.308 kb on - strand, within MPMX19_06715at 288.308 kb on - strand, within MPMX19_06715at 288.308 kb on - strand, within MPMX19_06715at 288.565 kb on + strandat 288.565 kb on + strandat 288.565 kb on + strandat 288.565 kb on + strandat 288.565 kb on + strandat 288.565 kb on + strandat 288.565 kb on + strandat 288.565 kb on + strandat 288.565 kb on + strandat 288.566 kb on - strandat 288.566 kb on - strandat 288.566 kb on - strandat 288.607 kb on + strandat 288.607 kb on + strandat 288.607 kb on + strandat 288.607 kb on + strandat 288.607 kb on + strandat 288.607 kb on + strandat 288.608 kb on - strandat 288.608 kb on - strandat 288.608 kb on - strandat 288.608 kb on - strandat 288.608 kb on - strandat 288.608 kb on - strandat 288.608 kb on - strandat 288.674 kb on + strandat 288.674 kb on + strandat 288.674 kb on + strandat 288.674 kb on + strandat 288.674 kb on + strandat 288.674 kb on + strandat 288.674 kb on + strandat 288.674 kb on + strandat 288.674 kb on + strandat 288.675 kb on - strandat 288.675 kb on - strandat 288.675 kb on - strandat 288.675 kb on - strandat 288.675 kb on - strandat 288.675 kb on - strandat 288.675 kb on - strandat 288.675 kb on - strandat 288.675 kb on - strandat 288.675 kb on - strandat 288.675 kb on - strandat 288.675 kb on - strandat 288.675 kb on - strandat 288.675 kb on - strandat 288.753 kb on + strand, within MPMX19_06716at 288.753 kb on + strand, within MPMX19_06716at 288.753 kb on + strand, within MPMX19_06716at 288.753 kb on + strand, within MPMX19_06716at 288.753 kb on + strand, within MPMX19_06716at 288.753 kb on + strand, within MPMX19_06716at 288.753 kb on + strand, within MPMX19_06716at 288.754 kb on - strand, within MPMX19_06716at 288.754 kb on - strand, within MPMX19_06716at 288.754 kb on - strand, within MPMX19_06716at 288.754 kb on - strand, within MPMX19_06716at 288.754 kb on - strand, within MPMX19_06716at 288.754 kb on - strand, within MPMX19_06716at 288.754 kb on - strand, within MPMX19_06716at 288.754 kb on - strand, within MPMX19_06716at 288.754 kb on - strand, within MPMX19_06716at 288.754 kb on - strand, within MPMX19_06716at 288.856 kb on + strand, within MPMX19_06716at 288.856 kb on + strand, within MPMX19_06716at 288.856 kb on + strand, within MPMX19_06716at 288.856 kb on + strand, within MPMX19_06716at 288.856 kb on + strand, within MPMX19_06716at 288.856 kb on + strand, within MPMX19_06716at 288.856 kb on + strand, within MPMX19_06716at 288.857 kb on - strand, within MPMX19_06716at 288.857 kb on - strand, within MPMX19_06716at 288.857 kb on - strand, within MPMX19_06716at 288.857 kb on - strand, within MPMX19_06716at 288.857 kb on - strand, within MPMX19_06716at 288.857 kb on - strand, within MPMX19_06716at 288.857 kb on - strand, within MPMX19_06716at 288.857 kb on - strand, within MPMX19_06716at 288.857 kb on - strand, within MPMX19_06716at 288.857 kb on - strand, within MPMX19_06716at 288.857 kb on - strand, within MPMX19_06716at 288.857 kb on - strand, within MPMX19_06716at 288.876 kb on + strandat 288.876 kb on + strandat 288.876 kb on + strandat 288.876 kb on + strandat 288.877 kb on - strandat 288.877 kb on - strandat 288.877 kb on - strandat 288.928 kb on - strandat 288.928 kb on - strandat 288.928 kb on - strandat 288.928 kb on - strandat 288.928 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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287,866 + MPMX19_06715 0.45 -0.3
287,866 + MPMX19_06715 0.45 -1.5
287,866 + MPMX19_06715 0.45 -0.6
287,866 + MPMX19_06715 0.45 +0.4
287,866 + MPMX19_06715 0.45 -0.6
287,866 + MPMX19_06715 0.45 -1.6
287,867 - MPMX19_06715 0.45 +0.1
287,867 - MPMX19_06715 0.45 +1.9
287,867 - MPMX19_06715 0.45 +0.3
287,867 - MPMX19_06715 0.45 -0.1
287,867 - MPMX19_06715 0.45 -1.4
287,869 + MPMX19_06715 0.45 -0.1
287,869 + MPMX19_06715 0.45 -1.1
287,869 + MPMX19_06715 0.45 +0.4
287,869 + MPMX19_06715 0.45 +0.6
287,869 + MPMX19_06715 0.45 -0.1
287,869 + MPMX19_06715 0.45 -0.5
287,869 + MPMX19_06715 0.45 -1.0
287,869 + MPMX19_06715 0.45 -1.5
287,869 + MPMX19_06715 0.45 -0.9
287,869 + MPMX19_06715 0.45 -2.4
287,869 + MPMX19_06715 0.45 +1.3
287,870 - MPMX19_06715 0.45 -0.2
287,870 - MPMX19_06715 0.45 +0.7
287,870 - MPMX19_06715 0.45 -1.3
287,870 - MPMX19_06715 0.45 -1.1
287,870 - MPMX19_06715 0.45 -1.0
287,870 - MPMX19_06715 0.45 +0.0
287,870 - MPMX19_06715 0.45 -0.5
287,870 - MPMX19_06715 0.45 +0.2
287,870 - MPMX19_06715 0.45 +0.3
287,870 - MPMX19_06715 0.45 +1.1
287,870 - MPMX19_06715 0.45 -0.7
287,870 - MPMX19_06715 0.45 -0.6
287,935 + MPMX19_06715 0.49 -0.5
287,936 - MPMX19_06715 0.50 -0.7
287,936 - MPMX19_06715 0.50 -0.7
287,936 - MPMX19_06715 0.50 +0.4
287,936 - MPMX19_06715 0.50 -0.8
287,936 - MPMX19_06715 0.50 -0.5
288,264 + MPMX19_06715 0.72 -0.8
288,265 - MPMX19_06715 0.72 +1.3
288,307 + MPMX19_06715 0.75 -0.4
288,307 + MPMX19_06715 0.75 -0.3
288,307 + MPMX19_06715 0.75 -2.5
288,307 + MPMX19_06715 0.75 -0.8
288,307 + MPMX19_06715 0.75 -2.0
288,308 - MPMX19_06715 0.75 -0.7
288,308 - MPMX19_06715 0.75 -1.6
288,308 - MPMX19_06715 0.75 -0.7
288,308 - MPMX19_06715 0.75 -0.5
288,308 - MPMX19_06715 0.75 -0.9
288,308 - MPMX19_06715 0.75 -0.5
288,308 - MPMX19_06715 0.75 -1.2
288,308 - MPMX19_06715 0.75 -0.0
288,308 - MPMX19_06715 0.75 -0.6
288,565 + +1.1
288,565 + -0.4
288,565 + -0.8
288,565 + -1.9
288,565 + -0.9
288,565 + -0.5
288,565 + -0.9
288,565 + +0.6
288,565 + -1.2
288,566 - +0.5
288,566 - +0.2
288,566 - -0.8
288,607 + -0.1
288,607 + +0.3
288,607 + -0.6
288,607 + -1.5
288,607 + +0.1
288,607 + +0.2
288,608 - +0.2
288,608 - -0.6
288,608 - -0.7
288,608 - -1.5
288,608 - -0.6
288,608 - -0.9
288,608 - +1.4
288,674 + -0.2
288,674 + +0.3
288,674 + +0.1
288,674 + -0.7
288,674 + -0.5
288,674 + +0.5
288,674 + -0.4
288,674 + -0.1
288,674 + -1.4
288,675 - -0.6
288,675 - -0.6
288,675 - -2.4
288,675 - -0.9
288,675 - -1.3
288,675 - -0.6
288,675 - -1.2
288,675 - +0.8
288,675 - +0.7
288,675 - -1.6
288,675 - -0.8
288,675 - -0.9
288,675 - +0.5
288,675 - -2.0
288,753 + MPMX19_06716 0.23 -0.4
288,753 + MPMX19_06716 0.23 +0.9
288,753 + MPMX19_06716 0.23 -0.9
288,753 + MPMX19_06716 0.23 -0.7
288,753 + MPMX19_06716 0.23 -1.1
288,753 + MPMX19_06716 0.23 -1.1
288,753 + MPMX19_06716 0.23 -0.5
288,754 - MPMX19_06716 0.24 -1.9
288,754 - MPMX19_06716 0.24 -1.8
288,754 - MPMX19_06716 0.24 +0.5
288,754 - MPMX19_06716 0.24 -0.5
288,754 - MPMX19_06716 0.24 +0.5
288,754 - MPMX19_06716 0.24 -1.9
288,754 - MPMX19_06716 0.24 -1.5
288,754 - MPMX19_06716 0.24 +0.1
288,754 - MPMX19_06716 0.24 -0.5
288,754 - MPMX19_06716 0.24 -1.8
288,856 + MPMX19_06716 0.84 -0.2
288,856 + MPMX19_06716 0.84 -1.9
288,856 + MPMX19_06716 0.84 -0.4
288,856 + MPMX19_06716 0.84 -2.6
288,856 + MPMX19_06716 0.84 -0.5
288,856 + MPMX19_06716 0.84 +0.5
288,856 + MPMX19_06716 0.84 -0.2
288,857 - MPMX19_06716 0.84 +1.2
288,857 - MPMX19_06716 0.84 -0.2
288,857 - MPMX19_06716 0.84 +0.1
288,857 - MPMX19_06716 0.84 -0.9
288,857 - MPMX19_06716 0.84 -0.4
288,857 - MPMX19_06716 0.84 -0.7
288,857 - MPMX19_06716 0.84 -1.6
288,857 - MPMX19_06716 0.84 -1.0
288,857 - MPMX19_06716 0.84 +0.0
288,857 - MPMX19_06716 0.84 -0.7
288,857 - MPMX19_06716 0.84 -2.4
288,857 - MPMX19_06716 0.84 -2.2
288,876 + +0.9
288,876 + +0.3
288,876 + -0.4
288,876 + -1.2
288,877 - +0.3
288,877 - -1.8
288,877 - -1.6
288,928 - -0.4
288,928 - +1.5
288,928 - -1.9
288,928 - -0.4
288,928 - -0.3

Or see this region's nucleotide sequence