Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06601

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06600 and MPMX19_06601 overlap by 4 nucleotidesMPMX19_06601 and MPMX19_06602 are separated by 8 nucleotides MPMX19_06600: MPMX19_06600 - hypothetical protein, at 95,334 to 97,496 _06600 MPMX19_06601: MPMX19_06601 - hypothetical protein, at 97,493 to 98,329 _06601 MPMX19_06602: MPMX19_06602 - hypothetical protein, at 98,338 to 99,819 _06602 Position (kb) 97 98 99Strain fitness (log2 ratio) -2 -1 0 1at 96.546 kb on + strand, within MPMX19_06600at 96.618 kb on + strand, within MPMX19_06600at 96.618 kb on + strand, within MPMX19_06600at 96.618 kb on + strand, within MPMX19_06600at 96.618 kb on + strand, within MPMX19_06600at 96.618 kb on + strand, within MPMX19_06600at 96.618 kb on + strand, within MPMX19_06600at 96.618 kb on + strand, within MPMX19_06600at 96.618 kb on + strand, within MPMX19_06600at 96.618 kb on + strand, within MPMX19_06600at 96.618 kb on + strand, within MPMX19_06600at 96.618 kb on + strand, within MPMX19_06600at 96.618 kb on + strand, within MPMX19_06600at 96.618 kb on + strand, within MPMX19_06600at 96.618 kb on + strand, within MPMX19_06600at 96.618 kb on + strand, within MPMX19_06600at 96.618 kb on + strand, within MPMX19_06600at 96.618 kb on + strand, within MPMX19_06600at 96.618 kb on + strand, within MPMX19_06600at 96.618 kb on + strand, within MPMX19_06600at 96.618 kb on + strand, within MPMX19_06600at 96.618 kb on + strand, within MPMX19_06600at 96.618 kb on + strand, within MPMX19_06600at 96.618 kb on + strand, within MPMX19_06600at 96.618 kb on + strand, within MPMX19_06600at 96.618 kb on + strand, within MPMX19_06600at 96.618 kb on + strand, within MPMX19_06600at 96.619 kb on - strand, within MPMX19_06600at 96.619 kb on - strand, within MPMX19_06600at 96.619 kb on - strand, within MPMX19_06600at 96.619 kb on - strand, within MPMX19_06600at 96.619 kb on - strand, within MPMX19_06600at 96.619 kb on - strand, within MPMX19_06600at 96.619 kb on - strand, within MPMX19_06600at 96.619 kb on - strand, within MPMX19_06600at 96.619 kb on - strand, within MPMX19_06600at 96.619 kb on - strand, within MPMX19_06600at 96.619 kb on - strand, within MPMX19_06600at 96.619 kb on - strand, within MPMX19_06600at 96.735 kb on + strand, within MPMX19_06600at 96.735 kb on + strand, within MPMX19_06600at 96.735 kb on + strand, within MPMX19_06600at 96.735 kb on + strand, within MPMX19_06600at 96.735 kb on + strand, within MPMX19_06600at 96.735 kb on + strand, within MPMX19_06600at 96.735 kb on + strand, within MPMX19_06600at 96.736 kb on - strand, within MPMX19_06600at 96.736 kb on - strand, within MPMX19_06600at 96.736 kb on - strand, within MPMX19_06600at 96.736 kb on - strand, within MPMX19_06600at 96.736 kb on - strand, within MPMX19_06600at 96.736 kb on - strand, within MPMX19_06600at 97.219 kb on - strand, within MPMX19_06600at 97.253 kb on + strand, within MPMX19_06600at 97.253 kb on + strand, within MPMX19_06600at 97.253 kb on + strand, within MPMX19_06600at 97.254 kb on - strand, within MPMX19_06600at 97.254 kb on - strand, within MPMX19_06600at 97.254 kb on - strand, within MPMX19_06600at 97.302 kb on + strandat 97.302 kb on + strandat 97.302 kb on + strandat 97.302 kb on + strandat 97.302 kb on + strandat 97.302 kb on + strandat 97.302 kb on + strandat 97.303 kb on - strandat 97.303 kb on - strandat 97.303 kb on - strandat 97.303 kb on - strandat 97.303 kb on - strandat 97.303 kb on - strandat 97.303 kb on - strandat 97.303 kb on - strandat 97.303 kb on - strandat 97.409 kb on + strandat 97.409 kb on + strandat 97.409 kb on + strandat 97.409 kb on + strandat 97.409 kb on + strandat 97.409 kb on + strandat 97.410 kb on - strandat 97.410 kb on - strandat 97.410 kb on - strandat 97.410 kb on - strandat 97.410 kb on - strandat 97.410 kb on - strandat 97.410 kb on - strandat 97.410 kb on - strandat 97.410 kb on - strandat 97.410 kb on - strandat 97.410 kb on - strandat 97.433 kb on + strandat 97.434 kb on - strandat 97.434 kb on - strandat 97.745 kb on + strand, within MPMX19_06601at 97.745 kb on + strand, within MPMX19_06601at 97.746 kb on - strand, within MPMX19_06601at 97.746 kb on - strand, within MPMX19_06601at 97.746 kb on - strand, within MPMX19_06601at 97.746 kb on - strand, within MPMX19_06601at 97.746 kb on - strand, within MPMX19_06601at 97.746 kb on - strand, within MPMX19_06601at 97.746 kb on - strand, within MPMX19_06601at 97.746 kb on - strand, within MPMX19_06601at 97.746 kb on - strand, within MPMX19_06601at 98.500 kb on + strand, within MPMX19_06602at 98.501 kb on - strand, within MPMX19_06602at 98.501 kb on - strand, within MPMX19_06602at 98.501 kb on - strand, within MPMX19_06602at 98.501 kb on - strand, within MPMX19_06602at 98.953 kb on + strand, within MPMX19_06602at 98.953 kb on + strand, within MPMX19_06602at 98.953 kb on + strand, within MPMX19_06602at 98.953 kb on + strand, within MPMX19_06602at 98.953 kb on + strand, within MPMX19_06602at 98.954 kb on - strand, within MPMX19_06602

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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96,546 + MPMX19_06600 0.56 -0.0
96,618 + MPMX19_06600 0.59 -0.5
96,618 + MPMX19_06600 0.59 -1.1
96,618 + MPMX19_06600 0.59 +0.3
96,618 + MPMX19_06600 0.59 +0.1
96,618 + MPMX19_06600 0.59 -0.1
96,618 + MPMX19_06600 0.59 -1.9
96,618 + MPMX19_06600 0.59 -1.2
96,618 + MPMX19_06600 0.59 +0.2
96,618 + MPMX19_06600 0.59 -0.0
96,618 + MPMX19_06600 0.59 +0.5
96,618 + MPMX19_06600 0.59 -0.5
96,618 + MPMX19_06600 0.59 +0.2
96,618 + MPMX19_06600 0.59 -0.7
96,618 + MPMX19_06600 0.59 -1.6
96,618 + MPMX19_06600 0.59 -0.9
96,618 + MPMX19_06600 0.59 -0.8
96,618 + MPMX19_06600 0.59 -1.2
96,618 + MPMX19_06600 0.59 -1.1
96,618 + MPMX19_06600 0.59 +1.3
96,618 + MPMX19_06600 0.59 -1.6
96,618 + MPMX19_06600 0.59 -1.4
96,618 + MPMX19_06600 0.59 -0.9
96,618 + MPMX19_06600 0.59 -0.7
96,618 + MPMX19_06600 0.59 -0.5
96,618 + MPMX19_06600 0.59 -1.8
96,618 + MPMX19_06600 0.59 -1.1
96,619 - MPMX19_06600 0.59 +0.5
96,619 - MPMX19_06600 0.59 -1.5
96,619 - MPMX19_06600 0.59 +1.7
96,619 - MPMX19_06600 0.59 +0.8
96,619 - MPMX19_06600 0.59 +1.7
96,619 - MPMX19_06600 0.59 +0.9
96,619 - MPMX19_06600 0.59 -0.5
96,619 - MPMX19_06600 0.59 +0.6
96,619 - MPMX19_06600 0.59 +0.8
96,619 - MPMX19_06600 0.59 +0.7
96,619 - MPMX19_06600 0.59 +0.2
96,619 - MPMX19_06600 0.59 -2.2
96,735 + MPMX19_06600 0.65 -2.5
96,735 + MPMX19_06600 0.65 +0.1
96,735 + MPMX19_06600 0.65 -0.5
96,735 + MPMX19_06600 0.65 +0.1
96,735 + MPMX19_06600 0.65 -0.9
96,735 + MPMX19_06600 0.65 +0.9
96,735 + MPMX19_06600 0.65 -1.2
96,736 - MPMX19_06600 0.65 +0.3
96,736 - MPMX19_06600 0.65 -0.7
96,736 - MPMX19_06600 0.65 +0.1
96,736 - MPMX19_06600 0.65 -0.9
96,736 - MPMX19_06600 0.65 -1.7
96,736 - MPMX19_06600 0.65 -0.9
97,219 - MPMX19_06600 0.87 +0.1
97,253 + MPMX19_06600 0.89 -1.4
97,253 + MPMX19_06600 0.89 +0.3
97,253 + MPMX19_06600 0.89 -0.5
97,254 - MPMX19_06600 0.89 -0.1
97,254 - MPMX19_06600 0.89 -0.7
97,254 - MPMX19_06600 0.89 +0.1
97,302 + +0.5
97,302 + -0.1
97,302 + +0.2
97,302 + -0.3
97,302 + -1.6
97,302 + +0.5
97,302 + +0.1
97,303 - +0.3
97,303 - +0.8
97,303 - -0.6
97,303 - +0.7
97,303 - -1.2
97,303 - -1.5
97,303 - -0.1
97,303 - -1.2
97,303 - -0.1
97,409 + -2.1
97,409 + +0.6
97,409 + -1.1
97,409 + -0.4
97,409 + -0.7
97,409 + +0.3
97,410 - -0.2
97,410 - -2.0
97,410 - -1.1
97,410 - -0.2
97,410 - -2.3
97,410 - +0.3
97,410 - -0.4
97,410 - -0.9
97,410 - -1.6
97,410 - +0.2
97,410 - +0.7
97,433 + -0.7
97,434 - -2.7
97,434 - -2.4
97,745 + MPMX19_06601 0.30 -0.0
97,745 + MPMX19_06601 0.30 -0.4
97,746 - MPMX19_06601 0.30 +0.1
97,746 - MPMX19_06601 0.30 +0.9
97,746 - MPMX19_06601 0.30 -0.1
97,746 - MPMX19_06601 0.30 -0.1
97,746 - MPMX19_06601 0.30 +1.1
97,746 - MPMX19_06601 0.30 -1.5
97,746 - MPMX19_06601 0.30 -0.4
97,746 - MPMX19_06601 0.30 -0.9
97,746 - MPMX19_06601 0.30 +0.8
98,500 + MPMX19_06602 0.11 +0.7
98,501 - MPMX19_06602 0.11 +1.6
98,501 - MPMX19_06602 0.11 -0.2
98,501 - MPMX19_06602 0.11 -2.1
98,501 - MPMX19_06602 0.11 -0.7
98,953 + MPMX19_06602 0.41 -0.8
98,953 + MPMX19_06602 0.41 -0.1
98,953 + MPMX19_06602 0.41 -1.0
98,953 + MPMX19_06602 0.41 +0.3
98,953 + MPMX19_06602 0.41 -1.2
98,954 - MPMX19_06602 0.42 +0.9

Or see this region's nucleotide sequence