Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06532

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06531 and MPMX19_06532 are separated by 35 nucleotidesMPMX19_06532 and MPMX19_06533 are separated by 90 nucleotidesMPMX19_06533 and MPMX19_06534 are separated by 373 nucleotides MPMX19_06531: MPMX19_06531 - O-acetyl-L-homoserine sulfhydrylase, at 318,560 to 319,855 _06531 MPMX19_06532: MPMX19_06532 - Validamycin A dioxygenase, at 319,891 to 320,952 _06532 MPMX19_06533: MPMX19_06533 - hypothetical protein, at 321,043 to 321,234 _06533 MPMX19_06534: MPMX19_06534 - Putative amino-acid ABC transporter-binding protein YhdW, at 321,608 to 322,678 _06534 Position (kb) 319 320 321Strain fitness (log2 ratio) -2 -1 0 1 2at 318.922 kb on - strand, within MPMX19_06531at 318.933 kb on - strand, within MPMX19_06531at 318.933 kb on - strand, within MPMX19_06531at 318.933 kb on - strand, within MPMX19_06531at 318.933 kb on - strand, within MPMX19_06531at 319.066 kb on - strand, within MPMX19_06531at 319.066 kb on - strand, within MPMX19_06531at 319.117 kb on - strand, within MPMX19_06531at 319.117 kb on - strand, within MPMX19_06531at 319.117 kb on - strand, within MPMX19_06531at 319.117 kb on - strand, within MPMX19_06531at 319.117 kb on - strand, within MPMX19_06531at 319.117 kb on - strand, within MPMX19_06531at 319.117 kb on - strand, within MPMX19_06531at 319.117 kb on - strand, within MPMX19_06531at 319.117 kb on - strand, within MPMX19_06531at 319.117 kb on - strand, within MPMX19_06531at 319.117 kb on - strand, within MPMX19_06531at 319.228 kb on - strand, within MPMX19_06531at 319.228 kb on - strand, within MPMX19_06531at 319.228 kb on - strand, within MPMX19_06531at 319.228 kb on - strand, within MPMX19_06531at 319.228 kb on - strand, within MPMX19_06531at 319.228 kb on - strand, within MPMX19_06531at 319.228 kb on - strand, within MPMX19_06531at 319.228 kb on - strand, within MPMX19_06531at 319.396 kb on - strand, within MPMX19_06531at 319.396 kb on - strand, within MPMX19_06531at 319.396 kb on - strand, within MPMX19_06531at 319.398 kb on + strand, within MPMX19_06531at 319.398 kb on + strand, within MPMX19_06531at 319.398 kb on + strand, within MPMX19_06531at 319.398 kb on + strand, within MPMX19_06531at 319.398 kb on + strand, within MPMX19_06531at 319.398 kb on + strand, within MPMX19_06531at 319.398 kb on + strand, within MPMX19_06531at 319.398 kb on + strand, within MPMX19_06531at 319.399 kb on - strand, within MPMX19_06531at 319.399 kb on - strand, within MPMX19_06531at 319.399 kb on - strand, within MPMX19_06531at 319.399 kb on - strand, within MPMX19_06531at 319.399 kb on - strand, within MPMX19_06531at 319.399 kb on - strand, within MPMX19_06531at 319.399 kb on - strand, within MPMX19_06531at 319.399 kb on - strand, within MPMX19_06531at 319.399 kb on - strand, within MPMX19_06531at 319.399 kb on - strand, within MPMX19_06531at 319.575 kb on + strand, within MPMX19_06531at 319.575 kb on + strand, within MPMX19_06531at 319.683 kb on + strand, within MPMX19_06531at 319.683 kb on + strand, within MPMX19_06531at 319.683 kb on + strand, within MPMX19_06531at 319.683 kb on + strand, within MPMX19_06531at 319.683 kb on + strand, within MPMX19_06531at 319.684 kb on - strand, within MPMX19_06531at 319.684 kb on - strand, within MPMX19_06531at 319.684 kb on - strand, within MPMX19_06531at 319.684 kb on - strand, within MPMX19_06531at 319.684 kb on - strand, within MPMX19_06531at 319.684 kb on - strand, within MPMX19_06531at 319.684 kb on - strand, within MPMX19_06531at 319.684 kb on - strand, within MPMX19_06531at 319.920 kb on - strandat 319.989 kb on - strandat 319.989 kb on - strandat 319.989 kb on - strandat 319.989 kb on - strandat 320.159 kb on + strand, within MPMX19_06532at 320.160 kb on - strand, within MPMX19_06532at 320.307 kb on + strand, within MPMX19_06532at 320.307 kb on + strand, within MPMX19_06532at 320.308 kb on - strand, within MPMX19_06532at 320.687 kb on + strand, within MPMX19_06532at 320.688 kb on - strand, within MPMX19_06532at 320.817 kb on - strand, within MPMX19_06532at 320.817 kb on - strand, within MPMX19_06532at 320.817 kb on - strand, within MPMX19_06532at 320.817 kb on - strand, within MPMX19_06532at 320.817 kb on - strand, within MPMX19_06532at 320.817 kb on - strand, within MPMX19_06532at 320.817 kb on - strand, within MPMX19_06532at 320.817 kb on - strand, within MPMX19_06532at 320.817 kb on - strand, within MPMX19_06532at 320.817 kb on - strand, within MPMX19_06532at 320.817 kb on - strand, within MPMX19_06532at 320.817 kb on - strand, within MPMX19_06532at 320.817 kb on - strand, within MPMX19_06532at 320.817 kb on - strand, within MPMX19_06532at 321.237 kb on + strandat 321.237 kb on + strandat 321.248 kb on + strandat 321.248 kb on + strandat 321.248 kb on + strandat 321.248 kb on + strandat 321.248 kb on + strandat 321.248 kb on + strandat 321.249 kb on - strandat 321.249 kb on - strandat 321.249 kb on - strandat 321.249 kb on - strandat 321.249 kb on - strandat 321.249 kb on - strandat 321.249 kb on - strandat 321.249 kb on - strandat 321.249 kb on - strandat 321.268 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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318,922 - MPMX19_06531 0.28 +1.2
318,933 - MPMX19_06531 0.29 -1.2
318,933 - MPMX19_06531 0.29 -0.1
318,933 - MPMX19_06531 0.29 +0.4
318,933 - MPMX19_06531 0.29 +0.2
319,066 - MPMX19_06531 0.39 +0.1
319,066 - MPMX19_06531 0.39 -1.5
319,117 - MPMX19_06531 0.43 -1.0
319,117 - MPMX19_06531 0.43 +0.7
319,117 - MPMX19_06531 0.43 -0.8
319,117 - MPMX19_06531 0.43 +2.2
319,117 - MPMX19_06531 0.43 -2.3
319,117 - MPMX19_06531 0.43 -1.3
319,117 - MPMX19_06531 0.43 +1.6
319,117 - MPMX19_06531 0.43 +0.5
319,117 - MPMX19_06531 0.43 +0.2
319,117 - MPMX19_06531 0.43 +0.1
319,117 - MPMX19_06531 0.43 +0.0
319,228 - MPMX19_06531 0.52 +1.6
319,228 - MPMX19_06531 0.52 -1.8
319,228 - MPMX19_06531 0.52 -0.6
319,228 - MPMX19_06531 0.52 -1.8
319,228 - MPMX19_06531 0.52 -0.1
319,228 - MPMX19_06531 0.52 -0.3
319,228 - MPMX19_06531 0.52 -0.1
319,228 - MPMX19_06531 0.52 +1.6
319,396 - MPMX19_06531 0.65 -0.8
319,396 - MPMX19_06531 0.65 +0.2
319,396 - MPMX19_06531 0.65 -0.6
319,398 + MPMX19_06531 0.65 -1.2
319,398 + MPMX19_06531 0.65 -1.6
319,398 + MPMX19_06531 0.65 -0.3
319,398 + MPMX19_06531 0.65 -0.8
319,398 + MPMX19_06531 0.65 +0.8
319,398 + MPMX19_06531 0.65 -1.6
319,398 + MPMX19_06531 0.65 +0.8
319,398 + MPMX19_06531 0.65 -2.5
319,399 - MPMX19_06531 0.65 -1.0
319,399 - MPMX19_06531 0.65 +0.2
319,399 - MPMX19_06531 0.65 -0.9
319,399 - MPMX19_06531 0.65 -0.3
319,399 - MPMX19_06531 0.65 +0.1
319,399 - MPMX19_06531 0.65 -0.6
319,399 - MPMX19_06531 0.65 +0.5
319,399 - MPMX19_06531 0.65 +1.0
319,399 - MPMX19_06531 0.65 +1.2
319,399 - MPMX19_06531 0.65 -0.9
319,575 + MPMX19_06531 0.78 +0.2
319,575 + MPMX19_06531 0.78 +0.8
319,683 + MPMX19_06531 0.87 +0.0
319,683 + MPMX19_06531 0.87 -0.3
319,683 + MPMX19_06531 0.87 +0.1
319,683 + MPMX19_06531 0.87 -0.2
319,683 + MPMX19_06531 0.87 -2.0
319,684 - MPMX19_06531 0.87 +1.9
319,684 - MPMX19_06531 0.87 +0.1
319,684 - MPMX19_06531 0.87 -0.5
319,684 - MPMX19_06531 0.87 +1.7
319,684 - MPMX19_06531 0.87 -0.1
319,684 - MPMX19_06531 0.87 -1.0
319,684 - MPMX19_06531 0.87 -1.2
319,684 - MPMX19_06531 0.87 -1.6
319,920 - -0.3
319,989 - -0.1
319,989 - -1.9
319,989 - +0.1
319,989 - +1.2
320,159 + MPMX19_06532 0.25 -1.7
320,160 - MPMX19_06532 0.25 -0.8
320,307 + MPMX19_06532 0.39 -0.9
320,307 + MPMX19_06532 0.39 -0.9
320,308 - MPMX19_06532 0.39 +0.4
320,687 + MPMX19_06532 0.75 -0.9
320,688 - MPMX19_06532 0.75 -1.1
320,817 - MPMX19_06532 0.87 +1.7
320,817 - MPMX19_06532 0.87 -1.2
320,817 - MPMX19_06532 0.87 -1.3
320,817 - MPMX19_06532 0.87 -0.1
320,817 - MPMX19_06532 0.87 -0.9
320,817 - MPMX19_06532 0.87 -0.5
320,817 - MPMX19_06532 0.87 -1.1
320,817 - MPMX19_06532 0.87 -0.2
320,817 - MPMX19_06532 0.87 -0.1
320,817 - MPMX19_06532 0.87 +0.2
320,817 - MPMX19_06532 0.87 -0.9
320,817 - MPMX19_06532 0.87 -0.5
320,817 - MPMX19_06532 0.87 +0.2
320,817 - MPMX19_06532 0.87 -1.2
321,237 + -0.8
321,237 + +0.5
321,248 + -0.3
321,248 + -0.7
321,248 + +0.7
321,248 + +0.2
321,248 + -1.1
321,248 + +0.4
321,249 - +0.7
321,249 - +1.2
321,249 - -0.5
321,249 - +0.6
321,249 - -1.8
321,249 - +0.1
321,249 - +0.3
321,249 - +0.2
321,249 - +0.2
321,268 - -0.2

Or see this region's nucleotide sequence