Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06505

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06502 and MPMX19_06503 are separated by 73 nucleotidesMPMX19_06503 and MPMX19_06504 are separated by 294 nucleotidesMPMX19_06504 and MPMX19_06505 are separated by 33 nucleotidesMPMX19_06505 and MPMX19_06506 overlap by 4 nucleotidesMPMX19_06506 and MPMX19_06507 are separated by 29 nucleotides MPMX19_06502: MPMX19_06502 - 60 kDa chaperonin 1, at 286,549 to 288,180 _06502 MPMX19_06503: MPMX19_06503 - 10 kDa chaperonin 5, at 288,254 to 288,547 _06503 MPMX19_06504: MPMX19_06504 - hypothetical protein, at 288,842 to 288,970 _06504 MPMX19_06505: MPMX19_06505 - hypothetical protein, at 289,004 to 290,521 _06505 MPMX19_06506: MPMX19_06506 - hypothetical protein, at 290,518 to 290,865 _06506 MPMX19_06507: MPMX19_06507 - hypothetical protein, at 290,895 to 291,938 _06507 Position (kb) 289 290 291Strain fitness (log2 ratio) -2 -1 0 1at 288.195 kb on + strandat 288.195 kb on + strandat 288.644 kb on - strandat 288.968 kb on + strandat 288.968 kb on + strandat 289.025 kb on + strandat 289.121 kb on - strandat 289.121 kb on - strandat 289.121 kb on - strandat 289.212 kb on - strand, within MPMX19_06505at 289.212 kb on - strand, within MPMX19_06505at 289.212 kb on - strand, within MPMX19_06505at 289.619 kb on + strand, within MPMX19_06505at 289.619 kb on + strand, within MPMX19_06505at 289.619 kb on + strand, within MPMX19_06505at 289.619 kb on + strand, within MPMX19_06505at 289.619 kb on + strand, within MPMX19_06505at 289.619 kb on + strand, within MPMX19_06505at 289.619 kb on + strand, within MPMX19_06505at 289.619 kb on + strand, within MPMX19_06505at 289.619 kb on + strand, within MPMX19_06505at 289.619 kb on + strand, within MPMX19_06505at 289.619 kb on + strand, within MPMX19_06505at 289.622 kb on + strand, within MPMX19_06505at 289.622 kb on + strand, within MPMX19_06505at 289.622 kb on + strand, within MPMX19_06505at 289.622 kb on + strand, within MPMX19_06505at 289.622 kb on + strand, within MPMX19_06505at 289.622 kb on + strand, within MPMX19_06505at 290.686 kb on + strand, within MPMX19_06506at 290.686 kb on + strand, within MPMX19_06506at 290.686 kb on + strand, within MPMX19_06506at 290.686 kb on + strand, within MPMX19_06506at 290.686 kb on + strand, within MPMX19_06506at 290.686 kb on + strand, within MPMX19_06506at 290.762 kb on - strand, within MPMX19_06506at 291.126 kb on + strand, within MPMX19_06507at 291.126 kb on + strand, within MPMX19_06507at 291.126 kb on + strand, within MPMX19_06507at 291.126 kb on + strand, within MPMX19_06507at 291.127 kb on - strand, within MPMX19_06507at 291.127 kb on - strand, within MPMX19_06507at 291.127 kb on - strand, within MPMX19_06507at 291.127 kb on - strand, within MPMX19_06507at 291.384 kb on + strand, within MPMX19_06507at 291.384 kb on + strand, within MPMX19_06507at 291.384 kb on + strand, within MPMX19_06507at 291.384 kb on + strand, within MPMX19_06507at 291.517 kb on - strand, within MPMX19_06507at 291.517 kb on - strand, within MPMX19_06507at 291.517 kb on - strand, within MPMX19_06507at 291.517 kb on - strand, within MPMX19_06507

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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288,195 + -0.6
288,195 + -0.6
288,644 - -1.2
288,968 + -0.1
288,968 + +0.2
289,025 + -2.4
289,121 - -0.6
289,121 - -1.7
289,121 - -0.6
289,212 - MPMX19_06505 0.14 -0.6
289,212 - MPMX19_06505 0.14 +0.9
289,212 - MPMX19_06505 0.14 -0.2
289,619 + MPMX19_06505 0.41 +0.0
289,619 + MPMX19_06505 0.41 +0.2
289,619 + MPMX19_06505 0.41 -0.2
289,619 + MPMX19_06505 0.41 -1.1
289,619 + MPMX19_06505 0.41 -0.5
289,619 + MPMX19_06505 0.41 -0.1
289,619 + MPMX19_06505 0.41 -0.1
289,619 + MPMX19_06505 0.41 -0.4
289,619 + MPMX19_06505 0.41 -0.5
289,619 + MPMX19_06505 0.41 -0.8
289,619 + MPMX19_06505 0.41 -0.3
289,622 + MPMX19_06505 0.41 -1.3
289,622 + MPMX19_06505 0.41 +1.2
289,622 + MPMX19_06505 0.41 -0.3
289,622 + MPMX19_06505 0.41 -0.2
289,622 + MPMX19_06505 0.41 -0.7
289,622 + MPMX19_06505 0.41 +0.0
290,686 + MPMX19_06506 0.48 -0.1
290,686 + MPMX19_06506 0.48 +0.5
290,686 + MPMX19_06506 0.48 +0.7
290,686 + MPMX19_06506 0.48 -0.0
290,686 + MPMX19_06506 0.48 +0.3
290,686 + MPMX19_06506 0.48 -0.9
290,762 - MPMX19_06506 0.70 -0.1
291,126 + MPMX19_06507 0.22 +1.1
291,126 + MPMX19_06507 0.22 +0.1
291,126 + MPMX19_06507 0.22 -1.5
291,126 + MPMX19_06507 0.22 -0.4
291,127 - MPMX19_06507 0.22 -1.3
291,127 - MPMX19_06507 0.22 -0.0
291,127 - MPMX19_06507 0.22 -2.1
291,127 - MPMX19_06507 0.22 +0.7
291,384 + MPMX19_06507 0.47 -0.1
291,384 + MPMX19_06507 0.47 -1.2
291,384 + MPMX19_06507 0.47 +0.1
291,384 + MPMX19_06507 0.47 -0.9
291,517 - MPMX19_06507 0.60 -0.2
291,517 - MPMX19_06507 0.60 +0.1
291,517 - MPMX19_06507 0.60 -0.7
291,517 - MPMX19_06507 0.60 -2.1

Or see this region's nucleotide sequence