Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06502 and MPMX19_06503 are separated by 73 nucleotides MPMX19_06503 and MPMX19_06504 are separated by 294 nucleotides MPMX19_06504 and MPMX19_06505 are separated by 33 nucleotides
MPMX19_06502: MPMX19_06502 - 60 kDa chaperonin 1, at 286,549 to 288,180
_06502
MPMX19_06503: MPMX19_06503 - 10 kDa chaperonin 5, at 288,254 to 288,547
_06503
MPMX19_06504: MPMX19_06504 - hypothetical protein, at 288,842 to 288,970
_06504
MPMX19_06505: MPMX19_06505 - hypothetical protein, at 289,004 to 290,521
_06505
Position (kb) 288
289 Strain fitness (log2 ratio) -2
-1
0
1 at 288.195 kb on + strand at 288.195 kb on + strand at 288.644 kb on - strand at 288.968 kb on + strand at 288.968 kb on + strand at 289.025 kb on + strand at 289.121 kb on - strand at 289.121 kb on - strand at 289.121 kb on - strand at 289.212 kb on - strand, within MPMX19_06505 at 289.212 kb on - strand, within MPMX19_06505 at 289.212 kb on - strand, within MPMX19_06505 at 289.619 kb on + strand, within MPMX19_06505 at 289.619 kb on + strand, within MPMX19_06505 at 289.619 kb on + strand, within MPMX19_06505 at 289.619 kb on + strand, within MPMX19_06505 at 289.619 kb on + strand, within MPMX19_06505 at 289.619 kb on + strand, within MPMX19_06505 at 289.619 kb on + strand, within MPMX19_06505 at 289.619 kb on + strand, within MPMX19_06505 at 289.619 kb on + strand, within MPMX19_06505 at 289.619 kb on + strand, within MPMX19_06505 at 289.619 kb on + strand, within MPMX19_06505 at 289.622 kb on + strand, within MPMX19_06505 at 289.622 kb on + strand, within MPMX19_06505 at 289.622 kb on + strand, within MPMX19_06505 at 289.622 kb on + strand, within MPMX19_06505 at 289.622 kb on + strand, within MPMX19_06505 at 289.622 kb on + strand, within MPMX19_06505
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 288,195 + -0.6 288,195 + -0.6 288,644 - -1.2 288,968 + -0.1 288,968 + +0.2 289,025 + -2.4 289,121 - -0.6 289,121 - -1.7 289,121 - -0.6 289,212 - MPMX19_06505 0.14 -0.6 289,212 - MPMX19_06505 0.14 +0.9 289,212 - MPMX19_06505 0.14 -0.2 289,619 + MPMX19_06505 0.41 +0.0 289,619 + MPMX19_06505 0.41 +0.2 289,619 + MPMX19_06505 0.41 -0.2 289,619 + MPMX19_06505 0.41 -1.1 289,619 + MPMX19_06505 0.41 -0.5 289,619 + MPMX19_06505 0.41 -0.1 289,619 + MPMX19_06505 0.41 -0.1 289,619 + MPMX19_06505 0.41 -0.4 289,619 + MPMX19_06505 0.41 -0.5 289,619 + MPMX19_06505 0.41 -0.8 289,619 + MPMX19_06505 0.41 -0.3 289,622 + MPMX19_06505 0.41 -1.3 289,622 + MPMX19_06505 0.41 +1.2 289,622 + MPMX19_06505 0.41 -0.3 289,622 + MPMX19_06505 0.41 -0.2 289,622 + MPMX19_06505 0.41 -0.7 289,622 + MPMX19_06505 0.41 +0.0
Or see this region's nucleotide sequence