Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06501

Experiment: NL-CCM, start OD=0.3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_06500 and MPMX19_06501 are separated by 30 nucleotidesMPMX19_06501 and MPMX19_06502 are separated by 173 nucleotides MPMX19_06500: MPMX19_06500 - hypothetical protein, at 283,976 to 285,157 _06500 MPMX19_06501: MPMX19_06501 - hypothetical protein, at 285,188 to 286,375 _06501 MPMX19_06502: MPMX19_06502 - 60 kDa chaperonin 1, at 286,549 to 288,180 _06502 Position (kb) 285 286 287Strain fitness (log2 ratio) -2 -1 0 1 2at 284.203 kb on - strand, within MPMX19_06500at 284.203 kb on - strand, within MPMX19_06500at 284.218 kb on - strand, within MPMX19_06500at 284.218 kb on - strand, within MPMX19_06500at 284.218 kb on - strand, within MPMX19_06500at 284.238 kb on + strand, within MPMX19_06500at 284.238 kb on + strand, within MPMX19_06500at 284.239 kb on - strand, within MPMX19_06500at 284.239 kb on - strand, within MPMX19_06500at 284.239 kb on - strand, within MPMX19_06500at 284.250 kb on + strand, within MPMX19_06500at 284.251 kb on - strand, within MPMX19_06500at 284.251 kb on - strand, within MPMX19_06500at 284.251 kb on - strand, within MPMX19_06500at 284.251 kb on - strand, within MPMX19_06500at 284.251 kb on - strand, within MPMX19_06500at 284.251 kb on - strand, within MPMX19_06500at 284.251 kb on - strand, within MPMX19_06500at 284.361 kb on + strand, within MPMX19_06500at 284.361 kb on + strand, within MPMX19_06500at 284.440 kb on - strand, within MPMX19_06500at 284.440 kb on - strand, within MPMX19_06500at 284.440 kb on - strand, within MPMX19_06500at 284.440 kb on - strand, within MPMX19_06500at 284.442 kb on + strand, within MPMX19_06500at 284.442 kb on + strand, within MPMX19_06500at 284.442 kb on + strand, within MPMX19_06500at 284.442 kb on + strand, within MPMX19_06500at 284.442 kb on + strand, within MPMX19_06500at 284.442 kb on + strand, within MPMX19_06500at 284.443 kb on - strand, within MPMX19_06500at 284.443 kb on - strand, within MPMX19_06500at 284.474 kb on - strand, within MPMX19_06500at 284.523 kb on + strand, within MPMX19_06500at 284.523 kb on + strand, within MPMX19_06500at 284.523 kb on + strand, within MPMX19_06500at 284.523 kb on + strand, within MPMX19_06500at 284.523 kb on + strand, within MPMX19_06500at 284.524 kb on - strand, within MPMX19_06500at 284.524 kb on - strand, within MPMX19_06500at 284.524 kb on - strand, within MPMX19_06500at 284.524 kb on - strand, within MPMX19_06500at 284.779 kb on - strand, within MPMX19_06500at 284.994 kb on + strand, within MPMX19_06500at 284.994 kb on + strand, within MPMX19_06500at 284.995 kb on - strand, within MPMX19_06500at 284.995 kb on - strand, within MPMX19_06500at 284.995 kb on - strand, within MPMX19_06500at 284.995 kb on - strand, within MPMX19_06500at 285.003 kb on + strand, within MPMX19_06500at 285.003 kb on + strand, within MPMX19_06500at 285.003 kb on + strand, within MPMX19_06500at 285.003 kb on + strand, within MPMX19_06500at 285.003 kb on + strand, within MPMX19_06500at 285.003 kb on + strand, within MPMX19_06500at 285.003 kb on + strand, within MPMX19_06500at 285.003 kb on + strand, within MPMX19_06500at 285.003 kb on + strand, within MPMX19_06500at 285.004 kb on - strand, within MPMX19_06500at 285.004 kb on - strand, within MPMX19_06500at 285.415 kb on - strand, within MPMX19_06501at 285.420 kb on + strand, within MPMX19_06501at 285.420 kb on + strand, within MPMX19_06501at 285.420 kb on + strand, within MPMX19_06501at 285.421 kb on - strand, within MPMX19_06501at 285.421 kb on - strand, within MPMX19_06501at 285.421 kb on - strand, within MPMX19_06501at 285.421 kb on - strand, within MPMX19_06501at 285.421 kb on - strand, within MPMX19_06501at 285.421 kb on - strand, within MPMX19_06501at 285.421 kb on - strand, within MPMX19_06501at 285.421 kb on - strand, within MPMX19_06501at 285.421 kb on - strand, within MPMX19_06501at 285.421 kb on - strand, within MPMX19_06501at 285.421 kb on - strand, within MPMX19_06501at 285.421 kb on - strand, within MPMX19_06501at 285.421 kb on - strand, within MPMX19_06501at 285.421 kb on - strand, within MPMX19_06501at 285.421 kb on - strand, within MPMX19_06501at 285.421 kb on - strand, within MPMX19_06501at 285.450 kb on + strand, within MPMX19_06501at 285.450 kb on + strand, within MPMX19_06501at 285.450 kb on + strand, within MPMX19_06501at 285.451 kb on - strand, within MPMX19_06501at 285.451 kb on - strand, within MPMX19_06501at 285.451 kb on - strand, within MPMX19_06501at 285.451 kb on - strand, within MPMX19_06501at 285.462 kb on + strand, within MPMX19_06501at 285.462 kb on + strand, within MPMX19_06501at 285.525 kb on + strand, within MPMX19_06501at 285.526 kb on - strand, within MPMX19_06501at 285.526 kb on - strand, within MPMX19_06501at 285.526 kb on - strand, within MPMX19_06501at 285.526 kb on - strand, within MPMX19_06501at 285.573 kb on + strand, within MPMX19_06501at 285.574 kb on - strand, within MPMX19_06501at 285.651 kb on + strand, within MPMX19_06501at 285.651 kb on + strand, within MPMX19_06501at 285.651 kb on + strand, within MPMX19_06501at 285.651 kb on + strand, within MPMX19_06501at 285.651 kb on + strand, within MPMX19_06501at 285.652 kb on - strand, within MPMX19_06501at 285.652 kb on - strand, within MPMX19_06501at 285.652 kb on - strand, within MPMX19_06501at 285.652 kb on - strand, within MPMX19_06501at 285.652 kb on - strand, within MPMX19_06501at 285.652 kb on - strand, within MPMX19_06501at 285.652 kb on - strand, within MPMX19_06501at 285.652 kb on - strand, within MPMX19_06501at 285.654 kb on + strand, within MPMX19_06501at 285.654 kb on + strand, within MPMX19_06501at 285.654 kb on + strand, within MPMX19_06501at 285.654 kb on + strand, within MPMX19_06501at 285.654 kb on + strand, within MPMX19_06501at 285.654 kb on + strand, within MPMX19_06501at 285.655 kb on - strand, within MPMX19_06501at 285.655 kb on - strand, within MPMX19_06501at 285.655 kb on - strand, within MPMX19_06501at 285.655 kb on - strand, within MPMX19_06501at 285.655 kb on - strand, within MPMX19_06501at 285.655 kb on - strand, within MPMX19_06501at 285.655 kb on - strand, within MPMX19_06501at 285.655 kb on - strand, within MPMX19_06501at 285.655 kb on - strand, within MPMX19_06501at 285.735 kb on + strand, within MPMX19_06501at 285.735 kb on + strand, within MPMX19_06501at 285.735 kb on + strand, within MPMX19_06501at 285.735 kb on + strand, within MPMX19_06501at 285.735 kb on + strand, within MPMX19_06501at 285.736 kb on - strand, within MPMX19_06501at 285.736 kb on - strand, within MPMX19_06501at 285.736 kb on - strand, within MPMX19_06501at 285.736 kb on - strand, within MPMX19_06501at 285.736 kb on - strand, within MPMX19_06501at 285.736 kb on - strand, within MPMX19_06501at 285.990 kb on + strand, within MPMX19_06501at 285.990 kb on + strand, within MPMX19_06501at 285.990 kb on + strand, within MPMX19_06501at 285.991 kb on - strand, within MPMX19_06501at 285.991 kb on - strand, within MPMX19_06501at 285.991 kb on - strand, within MPMX19_06501at 285.991 kb on - strand, within MPMX19_06501at 286.122 kb on + strand, within MPMX19_06501at 286.122 kb on + strand, within MPMX19_06501at 286.122 kb on + strand, within MPMX19_06501at 286.122 kb on + strand, within MPMX19_06501at 286.122 kb on + strand, within MPMX19_06501at 286.122 kb on + strand, within MPMX19_06501at 286.122 kb on + strand, within MPMX19_06501at 286.122 kb on + strand, within MPMX19_06501at 286.122 kb on + strand, within MPMX19_06501at 286.123 kb on - strand, within MPMX19_06501at 286.123 kb on - strand, within MPMX19_06501at 286.123 kb on - strand, within MPMX19_06501at 286.123 kb on - strand, within MPMX19_06501at 286.123 kb on - strand, within MPMX19_06501at 286.123 kb on - strand, within MPMX19_06501at 286.123 kb on - strand, within MPMX19_06501at 286.206 kb on + strand, within MPMX19_06501at 286.207 kb on - strand, within MPMX19_06501at 286.397 kb on + strandat 286.397 kb on + strandat 286.398 kb on - strandat 286.398 kb on - strandat 286.398 kb on - strandat 286.560 kb on - strandat 286.612 kb on + strandat 286.613 kb on - strandat 286.746 kb on - strand, within MPMX19_06502at 286.919 kb on + strand, within MPMX19_06502at 286.919 kb on + strand, within MPMX19_06502at 286.919 kb on + strand, within MPMX19_06502at 286.919 kb on + strand, within MPMX19_06502at 286.920 kb on - strand, within MPMX19_06502at 286.920 kb on - strand, within MPMX19_06502at 286.920 kb on - strand, within MPMX19_06502at 286.920 kb on - strand, within MPMX19_06502at 286.920 kb on - strand, within MPMX19_06502at 286.920 kb on - strand, within MPMX19_06502at 286.920 kb on - strand, within MPMX19_06502at 286.920 kb on - strand, within MPMX19_06502at 287.102 kb on + strand, within MPMX19_06502at 287.102 kb on + strand, within MPMX19_06502at 287.103 kb on - strand, within MPMX19_06502at 287.103 kb on - strand, within MPMX19_06502at 287.103 kb on - strand, within MPMX19_06502at 287.103 kb on - strand, within MPMX19_06502

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
remove
284,203 - MPMX19_06500 0.19 +0.9
284,203 - MPMX19_06500 0.19 +0.1
284,218 - MPMX19_06500 0.20 -0.6
284,218 - MPMX19_06500 0.20 -1.2
284,218 - MPMX19_06500 0.20 -1.5
284,238 + MPMX19_06500 0.22 -1.3
284,238 + MPMX19_06500 0.22 +0.1
284,239 - MPMX19_06500 0.22 +0.2
284,239 - MPMX19_06500 0.22 +1.9
284,239 - MPMX19_06500 0.22 -0.1
284,250 + MPMX19_06500 0.23 -0.9
284,251 - MPMX19_06500 0.23 -0.3
284,251 - MPMX19_06500 0.23 -0.8
284,251 - MPMX19_06500 0.23 -1.1
284,251 - MPMX19_06500 0.23 -0.6
284,251 - MPMX19_06500 0.23 -0.9
284,251 - MPMX19_06500 0.23 +0.4
284,251 - MPMX19_06500 0.23 -1.3
284,361 + MPMX19_06500 0.33 -0.3
284,361 + MPMX19_06500 0.33 +0.3
284,440 - MPMX19_06500 0.39 -0.5
284,440 - MPMX19_06500 0.39 -2.1
284,440 - MPMX19_06500 0.39 +0.2
284,440 - MPMX19_06500 0.39 -0.1
284,442 + MPMX19_06500 0.39 +0.8
284,442 + MPMX19_06500 0.39 -0.5
284,442 + MPMX19_06500 0.39 -1.9
284,442 + MPMX19_06500 0.39 +0.2
284,442 + MPMX19_06500 0.39 -1.0
284,442 + MPMX19_06500 0.39 -1.3
284,443 - MPMX19_06500 0.40 -1.2
284,443 - MPMX19_06500 0.40 +1.5
284,474 - MPMX19_06500 0.42 +0.1
284,523 + MPMX19_06500 0.46 +0.1
284,523 + MPMX19_06500 0.46 +2.0
284,523 + MPMX19_06500 0.46 +1.9
284,523 + MPMX19_06500 0.46 -0.2
284,523 + MPMX19_06500 0.46 +0.1
284,524 - MPMX19_06500 0.46 +0.7
284,524 - MPMX19_06500 0.46 +0.1
284,524 - MPMX19_06500 0.46 -0.1
284,524 - MPMX19_06500 0.46 -1.2
284,779 - MPMX19_06500 0.68 +0.1
284,994 + MPMX19_06500 0.86 +0.1
284,994 + MPMX19_06500 0.86 -1.1
284,995 - MPMX19_06500 0.86 +0.5
284,995 - MPMX19_06500 0.86 -0.7
284,995 - MPMX19_06500 0.86 -1.3
284,995 - MPMX19_06500 0.86 +0.9
285,003 + MPMX19_06500 0.87 -0.0
285,003 + MPMX19_06500 0.87 -0.1
285,003 + MPMX19_06500 0.87 -1.3
285,003 + MPMX19_06500 0.87 +1.2
285,003 + MPMX19_06500 0.87 -0.2
285,003 + MPMX19_06500 0.87 +0.2
285,003 + MPMX19_06500 0.87 +1.2
285,003 + MPMX19_06500 0.87 +0.5
285,003 + MPMX19_06500 0.87 -1.8
285,004 - MPMX19_06500 0.87 -0.2
285,004 - MPMX19_06500 0.87 -1.6
285,415 - MPMX19_06501 0.19 +0.8
285,420 + MPMX19_06501 0.20 +1.7
285,420 + MPMX19_06501 0.20 +0.1
285,420 + MPMX19_06501 0.20 +0.9
285,421 - MPMX19_06501 0.20 -0.6
285,421 - MPMX19_06501 0.20 -0.7
285,421 - MPMX19_06501 0.20 +0.2
285,421 - MPMX19_06501 0.20 -0.5
285,421 - MPMX19_06501 0.20 -1.2
285,421 - MPMX19_06501 0.20 +0.1
285,421 - MPMX19_06501 0.20 -1.2
285,421 - MPMX19_06501 0.20 -0.4
285,421 - MPMX19_06501 0.20 +0.2
285,421 - MPMX19_06501 0.20 -0.3
285,421 - MPMX19_06501 0.20 -0.6
285,421 - MPMX19_06501 0.20 +0.2
285,421 - MPMX19_06501 0.20 -0.3
285,421 - MPMX19_06501 0.20 +0.1
285,421 - MPMX19_06501 0.20 +0.4
285,421 - MPMX19_06501 0.20 +0.3
285,450 + MPMX19_06501 0.22 -2.3
285,450 + MPMX19_06501 0.22 -0.3
285,450 + MPMX19_06501 0.22 -0.3
285,451 - MPMX19_06501 0.22 -1.2
285,451 - MPMX19_06501 0.22 -1.5
285,451 - MPMX19_06501 0.22 -1.2
285,451 - MPMX19_06501 0.22 -0.5
285,462 + MPMX19_06501 0.23 -0.6
285,462 + MPMX19_06501 0.23 +1.7
285,525 + MPMX19_06501 0.28 -0.6
285,526 - MPMX19_06501 0.28 +0.5
285,526 - MPMX19_06501 0.28 -1.8
285,526 - MPMX19_06501 0.28 -1.2
285,526 - MPMX19_06501 0.28 -0.7
285,573 + MPMX19_06501 0.32 -0.1
285,574 - MPMX19_06501 0.32 -0.5
285,651 + MPMX19_06501 0.39 +0.2
285,651 + MPMX19_06501 0.39 -1.1
285,651 + MPMX19_06501 0.39 -1.3
285,651 + MPMX19_06501 0.39 -0.3
285,651 + MPMX19_06501 0.39 +0.0
285,652 - MPMX19_06501 0.39 -2.1
285,652 - MPMX19_06501 0.39 -2.7
285,652 - MPMX19_06501 0.39 -0.7
285,652 - MPMX19_06501 0.39 +0.2
285,652 - MPMX19_06501 0.39 -1.8
285,652 - MPMX19_06501 0.39 +0.5
285,652 - MPMX19_06501 0.39 -0.8
285,652 - MPMX19_06501 0.39 -1.1
285,654 + MPMX19_06501 0.39 -0.2
285,654 + MPMX19_06501 0.39 +0.7
285,654 + MPMX19_06501 0.39 +0.5
285,654 + MPMX19_06501 0.39 -0.6
285,654 + MPMX19_06501 0.39 +0.7
285,654 + MPMX19_06501 0.39 +0.9
285,655 - MPMX19_06501 0.39 -1.1
285,655 - MPMX19_06501 0.39 +0.5
285,655 - MPMX19_06501 0.39 -0.1
285,655 - MPMX19_06501 0.39 +0.3
285,655 - MPMX19_06501 0.39 +0.8
285,655 - MPMX19_06501 0.39 +1.1
285,655 - MPMX19_06501 0.39 -1.2
285,655 - MPMX19_06501 0.39 +0.2
285,655 - MPMX19_06501 0.39 -0.8
285,735 + MPMX19_06501 0.46 +1.2
285,735 + MPMX19_06501 0.46 -0.8
285,735 + MPMX19_06501 0.46 +0.1
285,735 + MPMX19_06501 0.46 +0.9
285,735 + MPMX19_06501 0.46 -1.7
285,736 - MPMX19_06501 0.46 -0.3
285,736 - MPMX19_06501 0.46 +1.8
285,736 - MPMX19_06501 0.46 -0.9
285,736 - MPMX19_06501 0.46 +0.2
285,736 - MPMX19_06501 0.46 -1.1
285,736 - MPMX19_06501 0.46 -1.3
285,990 + MPMX19_06501 0.68 +0.4
285,990 + MPMX19_06501 0.68 -0.1
285,990 + MPMX19_06501 0.68 +0.7
285,991 - MPMX19_06501 0.68 -0.7
285,991 - MPMX19_06501 0.68 -0.3
285,991 - MPMX19_06501 0.68 -2.2
285,991 - MPMX19_06501 0.68 -0.4
286,122 + MPMX19_06501 0.79 -1.1
286,122 + MPMX19_06501 0.79 +0.4
286,122 + MPMX19_06501 0.79 +0.1
286,122 + MPMX19_06501 0.79 -0.2
286,122 + MPMX19_06501 0.79 -0.3
286,122 + MPMX19_06501 0.79 +0.2
286,122 + MPMX19_06501 0.79 -0.5
286,122 + MPMX19_06501 0.79 -0.2
286,122 + MPMX19_06501 0.79 -0.8
286,123 - MPMX19_06501 0.79 +1.2
286,123 - MPMX19_06501 0.79 -0.7
286,123 - MPMX19_06501 0.79 +0.1
286,123 - MPMX19_06501 0.79 -0.6
286,123 - MPMX19_06501 0.79 +0.7
286,123 - MPMX19_06501 0.79 -0.6
286,123 - MPMX19_06501 0.79 +0.4
286,206 + MPMX19_06501 0.86 +0.1
286,207 - MPMX19_06501 0.86 +0.4
286,397 + +1.9
286,397 + +0.2
286,398 - -0.7
286,398 - +0.8
286,398 - +0.1
286,560 - -1.1
286,612 + +0.5
286,613 - +1.4
286,746 - MPMX19_06502 0.12 -1.8
286,919 + MPMX19_06502 0.23 -2.5
286,919 + MPMX19_06502 0.23 -0.2
286,919 + MPMX19_06502 0.23 -1.2
286,919 + MPMX19_06502 0.23 -0.1
286,920 - MPMX19_06502 0.23 -0.1
286,920 - MPMX19_06502 0.23 +0.1
286,920 - MPMX19_06502 0.23 +0.2
286,920 - MPMX19_06502 0.23 -1.3
286,920 - MPMX19_06502 0.23 +0.1
286,920 - MPMX19_06502 0.23 -0.7
286,920 - MPMX19_06502 0.23 -1.5
286,920 - MPMX19_06502 0.23 -0.3
287,102 + MPMX19_06502 0.34 -0.3
287,102 + MPMX19_06502 0.34 -0.0
287,103 - MPMX19_06502 0.34 -0.9
287,103 - MPMX19_06502 0.34 -1.0
287,103 - MPMX19_06502 0.34 -0.3
287,103 - MPMX19_06502 0.34 -1.9

Or see this region's nucleotide sequence